Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Forward (+)

20125880 .. 20128494

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25630.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGACCCAAAAGTGGGAAAGGGAATTGGAGCTCCAAGTTCAAGTTCAAGGGCATACTCGGATTGCCCACCACTTTGATCTTCTGCTCCTTCTTCTTCCTTGCTGGCTTCTATGGCTCCTCCCTCCTCTCCCAGCATGTGAGTGGTGGTGGTAATAGGCTGAGAGCGAGACTGTTGGAGACAGAGTACAATTCGATGCCTTATGGCAAGACCGGTGACGATTCTTTAACTTCCATTCCCTTTCAGGTTTTGAGTTGGTATCCGCGAGCATTATATTTTCCTAATTTTGCAACTGCGGAGCAATGCGAAAGCATAATCGGTTTGGCAAAACCACGCCTTAAACCATCGATTTTGGCTTTGCGAGAAGGAGAGACAGAGGAAAGCACAAAGGATATACGAACAAGTTCAGGCGTGTTTCTTTCTGCTTCTGATGATAAATCCGGGACTTTGGATGTGATTGAGGAAAAGATTGCAAGGGCTACAATGCTTCCCAGGACACACGGAGAGGCATTTAACGTCTTGCGCTATGAGATCGGGCAGAAGTATAATTCTCATTATGATGCATTCCACCCTGATCAATATGGTCCTCAGAAGAGCCAAAGGGTTGCATCTTTCTTGTTGTATTTAAGTGATGTTCAAGAAGGTGGTGAAACCATGTTTCCTTACGAGAATGGCTCAAACACGGATGGAACCTATGATTTTCGGGAATGTGTTGGTTTAAAAGTGAAGCCACGCAAAGGGGATGGACTTCTGTTTTATTCATTGCTTCCAAATGGTACAATTGATATGTTAGCATTACACGGGAGCTGCCCTGTAATCGAAGGGGAAAAATGGGTAGCTACAAAGTGGATCAGGGACCAAGAACAAGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

292

Amino Acids

32.55

Weight (kDa)

6.25

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AciI	CCGC	2 cut(s)	263, 296
AclWI	GGATC	1 cut(s)	857
AfaI	GTAC	2 cut(s)	188, 778
AfiI	CCNNNNNNNGG	3 cut(s)	14, 15, 737
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	43, 49, 638
AjnI	CCWGG	1 cut(s)	491
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	3 cut(s)	33, 807, 839
AluI	AGCT	3 cut(s)	33, 807, 839
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	3 cut(s)	163, 173, 365
AlwI	GGATC	1 cut(s)	857
ApeKI	GCWGC	1 cut(s)	807
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	584, 856
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	227, 659
AvaII	GGWCC	2 cut(s)	584, 856
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	794
BccI	CCATC	3 cut(s)	352, 680, 737
BciT130I	CCWGG	1 cut(s)	493
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	3 cut(s)	163, 173, 365
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	808
BlsI	GCNGC	1 cut(s)	809
Bme1390I	CCNGG	2 cut(s)	442, 493
Bme18I	GGWCC	2 cut(s)	584, 856
BmgT120I	GGNCC	2 cut(s)	584, 856
BmiI	GGNNCC	3 cut(s)	118, 691, 857
BmrFI	CCNGG	2 cut(s)	442, 493
BmsI	GCATC	3 cut(s)	186, 550, 617
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpuMI	CCSGG	1 cut(s)	442
Bsa29I	ATCGAT	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 15, 737
Bse118I	RCCGGY	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	308, 761
BseBI	CCWGG	1 cut(s)	493
BseCI	ATCGAT	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	3 cut(s)	457, 691, 748
BseLI	CCNNNNNNNGG	3 cut(s)	14, 15, 737
BseMI	GCAATG	2 cut(s)	308, 761
BseMII	CTCAG	2 cut(s)	152, 602
BseRI	GAGGAG	2 cut(s)	109, 116
BseXI	GCAGC	1 cut(s)	794
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	213, 441
BslFI	GGGAC	2 cut(s)	457, 869
BslI	CCNNNNNNNGG	3 cut(s)	14, 15, 737
BsmAI	GTCTC	3 cut(s)	163, 173, 365
BsmFI	GGGAC	2 cut(s)	457, 869
BsmI	GAATGC	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	4 cut(s)	78, 531, 574, 849
BspACI	CCGC	2 cut(s)	263, 296
BspCNI	CTCAG	2 cut(s)	153, 601
BspDI	ATCGAT	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	118, 691, 857
BspPI	GGATC	1 cut(s)	857
BspQI	GCTCTTC	1 cut(s)	587
BsrDI	GCAATG	2 cut(s)	308, 761
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	4 cut(s)	78, 531, 574, 849
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	106, 267
BstDEI	CTNAG	2 cut(s)	161, 588
BstF5I	GGATG	3 cut(s)	457, 691, 748
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	4 cut(s)	81, 534, 577, 852
BstMAI	GTCTC	3 cut(s)	163, 173, 365
BstMBI	GATC	4 cut(s)	78, 531, 574, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	440, 491
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	794
Bsu15I	ATCGAT	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	347
BtsCI	GGATG	3 cut(s)	457, 691, 748
Cac8I	GCNNGC	2 cut(s)	106, 267
CfoI	GCGC	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	584, 856
ClaI	ATCGAT	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	187, 777
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	2 cut(s)	137, 655
CviQI	GTAC	2 cut(s)	187, 777
DdeI	CTNAG	2 cut(s)	161, 588
DpnI	GATC	4 cut(s)	80, 533, 576, 851
DpnII	GATC	4 cut(s)	78, 531, 574, 849
DraI	TTTAAA	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	584, 856
Eco53kI	GAGCTC	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	140, 658
FaqI	GGGAC	2 cut(s)	457, 869
FatI	CATG	2 cut(s)	136, 654
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	1 cut(s)	808
FokI	GGATG	3 cut(s)	464, 698, 755
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	808
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	1 cut(s)	808
GsaI	CCCAGC	1 cut(s)	136
HapII	CCGG	2 cut(s)	213, 441
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	140, 658
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	2 cut(s)	213, 441
HphI	GGTGA	2 cut(s)	227, 659
Hpy188I	TCNGA	3 cut(s)	62, 430, 591
Hpy188III	TCNNGA	2 cut(s)	638, 704
HpyAV	CCTTC	4 cut(s)	100, 359, 635, 815
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	4 cut(s)	290, 473, 563, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	161, 588
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	140, 658
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	78, 531, 574, 849
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	6 cut(s)	30, 38, 92, 122, 298, 804
Lsp1109I	GCAGC	1 cut(s)	794
LweI	GCATC	3 cut(s)	186, 550, 617
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	4 cut(s)	80, 533, 576, 851
MboI	GATC	4 cut(s)	78, 531, 574, 849
MboII	GAAGA	4 cut(s)	73, 85, 88, 604
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	5 cut(s)	25, 190, 283, 547, 780
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	8 cut(s)	130, 134, 137, 370, 454, 499, 597, 862
Mph1103I	ATGCAT	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	5 cut(s)	227, 339, 513, 626, 719
MslI	CAYNNNNRTG	2 cut(s)	141, 558
MspI	CCGG	2 cut(s)	213, 441
MspR9I	CCNGG	2 cut(s)	442, 493
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	493
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	442
NdeII	GATC	4 cut(s)	78, 531, 574, 849
NlaIII	CATG	2 cut(s)	140, 658
NlaIV	GGNNCC	3 cut(s)	118, 691, 857
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	440
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	3 cut(s)	118, 691, 857
PspPI	GGNCC	2 cut(s)	584, 856
RsaI	GTAC	2 cut(s)	188, 778
RsaNI	GTAC	2 cut(s)	187, 777
RseI	CAYNNNNRTG	2 cut(s)	141, 558
SacI	GAGCTC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	5 cut(s)	227, 339, 513, 626, 719
SatI	GCNGC	1 cut(s)	808
Sau3AI	GATC	4 cut(s)	78, 531, 574, 849
Sau96I	GGNCC	2 cut(s)	584, 856
ScrFI	CCNGG	2 cut(s)	442, 493
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	7 cut(s)	35, 249, 519, 646, 695, 809, 841
SfaNI	GCATC	3 cut(s)	186, 550, 617
SinI	GGWCC	2 cut(s)	584, 856
SmiMI	CAYNNNNRTG	2 cut(s)	141, 558
Sse9I	AATT	5 cut(s)	25, 190, 283, 547, 780
SsiI	CCGC	2 cut(s)	263, 296
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	440, 491
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	3 cut(s)	194, 347, 819
TasI	AATT	5 cut(s)	25, 190, 283, 547, 780
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	5 cut(s)	227, 339, 513, 626, 719
Tru9I	TTAA	5 cut(s)	227, 339, 513, 626, 719
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	807
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	750
TspGWI	ACGGA	2 cut(s)	516, 698
VpaK11BI	GGWCC	2 cut(s)	584, 856
XceI	RCATGY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	403
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.