Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Forward (+)

9940402 .. 9943329

Gene Structure 2928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17210.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGAATCGACCCAATAATGAGACCCAAATCCCTCAACGGGAATTGGAGCTCCAGGTTGAAGTTCAAAGCCAAGCTCCGATTACCCACCGTCGTCATTTTGTGCTCCTTTTGCTTCATTGCCGGCTTCTTCATCTCCTCTCTCTTCTATCAGGATGTAGATGGTGGTGGCAGTTCACCCAGAACGAGGCTGCTGGAAACCGAGTACGAAACGATGCCGTTTGGGGAGACTGGAGACGGGTCTTTAACTTCAATGCCCTTCCAGGTGTTGAGCTGGTATCCAAGAGCGTTATATTTTCCTAATTTTGCTTCTGCGGAGCAATGTGAGACTATTATTGATTTGGCAAAGCCGGAGCTTAAACCCTCGACGTTGGCTTTGAGAGATGGAGAGACTGAGGAGAATACAAAGGGGATTAGAACAAGTTCTGGGATGTTTCTTTCGGCTTCTCAAGACAAGTCTGGGACTTTGGATGTCATTGAGGAAAAGATTGCAAGAGCAACAATGCTTCCCAGGACTCATGGAGAGGCATTCAACGTCTTGCGTTATGAGATTGGGCAGAAGTATAATTCTCATTATGATGCTTTCCACCCAGATGAATATGGTCCACAGCCAAGCCAAAGGGTTGCATCATTTTTGTTATATTTAACCGATGTTAAAGAAGGCGGGGAAACAATGTTTCCGTATGAGAGCGGCTTGAACCTGGATGGAAAACATGATGCTCATGAATGTATGGGTTTGAGAGTGAAGCCACGCAGAGGAGACGGTCTTCTGTTTTATTCTTTGCTCCCTAATGGTACAATTGATCCGTTATCAATACATGGGAGTTGCCCTGTAATCAAAGGCACAAAATGGGTGGCTACAAAGTGGATCAGGAATCAAGTACAAGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

298

Amino Acids

33.33

Weight (kDa)

6.11

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	178 - 260	3.4e-09	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	690
AciI	CCGC	3 cut(s)	314, 663, 690
AclWI	GGATC	2 cut(s)	797, 875
AfaI	GTAC	3 cut(s)	206, 796, 882
AfiI	CCNNNNNNNGG	3 cut(s)	39, 186, 755
AgsI	TTSAA	5 cut(s)	61, 67, 252, 532, 697
AjnI	CCWGG	4 cut(s)	53, 261, 509, 699
AluBI	AGCT	4 cut(s)	51, 76, 273, 355
AluI	AGCT	4 cut(s)	51, 76, 273, 355
Alw21I	GWGCWC	2 cut(s)	53, 107
Alw26I	GTCTC	6 cut(s)	16, 221, 228, 320, 383, 753
AlwI	GGATC	2 cut(s)	797, 875
ApeKI	GCWGC	1 cut(s)	190
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
Asp700I	GAANNNNTTC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	2 cut(s)	53, 107
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	3 cut(s)	155, 377, 698
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	4 cut(s)	55, 263, 511, 701
BciVI	GTATCC	1 cut(s)	288
BcoDI	GTCTC	6 cut(s)	16, 221, 228, 320, 383, 753
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	2 cut(s)	191, 691
BlsI	GCNGC	2 cut(s)	192, 692
Bme1390I	CCNGG	4 cut(s)	55, 263, 511, 701
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmrFI	CCNGG	4 cut(s)	55, 263, 511, 701
BmsI	GCATC	4 cut(s)	204, 568, 635, 706
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	2 cut(s)	37, 252
BpuEI	CTTGAG	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 186, 755
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	2 cut(s)	117, 326
BseBI	CCWGG	4 cut(s)	55, 263, 511, 701
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	4 cut(s)	160, 435, 475, 709
BseLI	CCNNNNNNNGG	3 cut(s)	39, 186, 755
BseMI	GCAATG	2 cut(s)	117, 326
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	3 cut(s)	127, 410, 771
BseXI	GCAGC	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	53, 107
BsiSI	CCGG	2 cut(s)	123, 350
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	39, 186, 755
BsmAI	GTCTC	6 cut(s)	16, 221, 228, 320, 383, 753
BsmBI	CGTCTC	2 cut(s)	228, 753
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	527
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	53, 107
Bsp143I	GATC	2 cut(s)	802, 867
BspACI	CCGC	3 cut(s)	314, 663, 690
BspCNI	CTCAG	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	721
BspPI	GGATC	2 cut(s)	797, 875
BspTNI	GGTCTC	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	690
BsrDI	GCAATG	2 cut(s)	117, 326
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	2 cut(s)	802, 867
Bst2UI	CCWGG	4 cut(s)	55, 263, 511, 701
Bst4CI	ACNGT	2 cut(s)	91, 764
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	4 cut(s)	160, 435, 475, 709
BstKTI	GATC	2 cut(s)	805, 870
BstMAI	GTCTC	6 cut(s)	16, 221, 228, 320, 383, 753
BstMBI	GATC	2 cut(s)	802, 867
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	4 cut(s)	55, 263, 511, 701
BstSCI	CCNGG	4 cut(s)	53, 261, 509, 699
BstV1I	GCAGC	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	758
BsuI	GTATCC	1 cut(s)	288
BtsCI	GGATG	4 cut(s)	160, 435, 475, 709
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	721
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	3 cut(s)	205, 795, 881
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	4 cut(s)	518, 713, 722, 818
CviQI	GTAC	3 cut(s)	205, 795, 881
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	804, 869
DpnII	GATC	2 cut(s)	802, 867
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	4 cut(s)	53, 261, 509, 699
EcoT38I	GRGCYC	1 cut(s)	53
Esp3I	CGTCTC	2 cut(s)	228, 753
FaeI	CATG	4 cut(s)	521, 716, 725, 821
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	4 cut(s)	517, 712, 721, 817
FauI	CCCGC	1 cut(s)	656
Fnu4HI	GCNGC	2 cut(s)	191, 691
FokI	GGATG	4 cut(s)	167, 442, 482, 716
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	191, 691
GluI	GCNGC	2 cut(s)	191, 691
GsuI	CTGGAG	2 cut(s)	37, 252
HapII	CCGG	2 cut(s)	123, 350
Hin1II	CATG	4 cut(s)	521, 716, 725, 821
HinfI	GANTC	3 cut(s)	6, 514, 874
HpaII	CCGG	2 cut(s)	123, 350
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	176, 605
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	4 cut(s)	152, 449, 722, 871
Hpy8I	GTNNAC	2 cut(s)	176, 605
Hpy99I	CGWCG	2 cut(s)	95, 370
HpyAV	CCTTC	2 cut(s)	268, 653
HpyCH4III	ACNGT	2 cut(s)	91, 764
HpyCH4IV	ACGT	2 cut(s)	368, 534
HpyCH4V	TGCA	2 cut(s)	491, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	2 cut(s)	368, 534
Hsp92II	CATG	4 cut(s)	521, 716, 725, 821
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	802, 867
LmnI	GCTCC	7 cut(s)	48, 56, 81, 110, 316, 352, 789
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	4 cut(s)	204, 568, 635, 706
MaeII	ACGT	2 cut(s)	368, 534
MalI	GATC	2 cut(s)	804, 869
MbiI	CCGCTC	1 cut(s)	690
MboI	GATC	2 cut(s)	802, 867
MboII	GAAGA	3 cut(s)	121, 136, 758
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	2 cut(s)	53, 107
MluCI	AATT	4 cut(s)	43, 301, 565, 798
MlyI	GAGTC	1 cut(s)	508
MnlI	CCTC	9 cut(s)	44, 148, 180, 373, 388, 472, 517, 749, 880
MroNI	GCCGGC	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	5 cut(s)	245, 357, 644, 654, 892
MslI	CAYNNNNRTG	2 cut(s)	576, 591
MspI	CCGG	2 cut(s)	123, 350
MspR9I	CCNGG	4 cut(s)	55, 263, 511, 701
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	4 cut(s)	55, 263, 511, 701
MwoI	GCNNNNNNNGC	1 cut(s)	111
NaeI	GCCGGC	1 cut(s)	124
NdeII	GATC	2 cut(s)	802, 867
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	4 cut(s)	521, 716, 725, 821
PagI	TCATGA	1 cut(s)	721
PctI	GAATGC	1 cut(s)	527
PdiI	GCCGGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	6, 874
PkrI	GCNGC	2 cut(s)	192, 692
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	4 cut(s)	53, 261, 509, 699
PspGI	CCWGG	4 cut(s)	53, 261, 509, 699
PspPI	GGNCC	1 cut(s)	602
RsaI	GTAC	3 cut(s)	206, 796, 882
RsaNI	GTAC	3 cut(s)	205, 795, 881
RseI	CAYNNNNRTG	2 cut(s)	576, 591
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	5 cut(s)	245, 357, 644, 654, 892
SatI	GCNGC	2 cut(s)	191, 691
Sau3AI	GATC	2 cut(s)	802, 867
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	4 cut(s)	55, 263, 511, 701
SduI	GDGCHC	2 cut(s)	53, 107
SetI	ASST	9 cut(s)	53, 59, 78, 267, 275, 357, 371, 537, 702
SfaNI	GCATC	4 cut(s)	204, 568, 635, 706
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	2 cut(s)	576, 591
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	4 cut(s)	43, 301, 565, 798
SsiI	CCGC	3 cut(s)	314, 663, 690
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	4 cut(s)	53, 261, 509, 699
TaaI	ACNGT	2 cut(s)	91, 764
TaiI	ACGT	2 cut(s)	371, 537
TaqI	TCGA	2 cut(s)	9, 365
TasI	AATT	4 cut(s)	43, 301, 565, 798
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	2 cut(s)	6, 874
Tru1I	TTAA	5 cut(s)	245, 357, 644, 654, 892
Tru9I	TTAA	5 cut(s)	245, 357, 644, 654, 892
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	106, 121, 609, 738
TspGWI	ACGGA	2 cut(s)	669, 795
VpaK11BI	GGWCC	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.