prolyl 4-hydroxylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G23096 |
| fragaria_vesca | FvH4_1g17210 FvH4_1g17210 FvH4_1g17210 |
| malus_domestica | MD02G1182100.v1.1 MD15G1293300.v1.1 |
| prunus_persica | Prupe.6G224300_v2.0.a1 |
| pyrus_communis | pycom15g25630 |
| rosa_chinensis | RchiOBHm_Chr2g0107361 |
| rosa_laevigata | RLG00000017573 |
| rosa_multiflora | Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00136400 |
| rosa_rugosa | Rorug02G0142600 Rorug03G0188400 |
| rosa_samantha | Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400 |
| rosa_wichuraiana | Rw2G015300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 110 |
| AccB1I | GGYRCC | 1 cut(s) | 110 |
| AfaI | GTAC | 1 cut(s) | 112 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 431 |
| AgsI | TTSAA | 1 cut(s) | 361 |
| AjnI | CCWGG | 1 cut(s) | 424 |
| AluBI | AGCT | 5 cut(s) | 69, 125, 200, 393, 440 |
| AluI | AGCT | 5 cut(s) | 69, 125, 200, 393, 440 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| Ama87I | CYCGRG | 1 cut(s) | 230 |
| AoxI | GGCC | 1 cut(s) | 270 |
| ApeKI | GCWGC | 3 cut(s) | 69, 440, 452 |
| Asp718I | GGTACC | 1 cut(s) | 110 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AsuC2I | CCSGG | 2 cut(s) | 231, 232 |
| AsuHPI | GGTGA | 1 cut(s) | 398 |
| AsuNHI | GCTAGC | 1 cut(s) | 121 |
| AvaI | CYCGRG | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 1 cut(s) | 437 |
| BanI | GGYRCC | 1 cut(s) | 110 |
| BbsI | GAAGAC | 1 cut(s) | 316 |
| BbvI | GCAGC | 3 cut(s) | 56, 427, 439 |
| BciT130I | CCWGG | 1 cut(s) | 426 |
| BcnI | CCSGG | 2 cut(s) | 231, 232 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BisI | GCNGC | 3 cut(s) | 70, 441, 453 |
| BlsI | GCNGC | 3 cut(s) | 71, 442, 454 |
| Bme1390I | CCNGG | 3 cut(s) | 231, 232, 426 |
| BmeT110I | CYCGRG | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmiI | GGNNCC | 2 cut(s) | 22, 112 |
| BmrFI | CCNGG | 3 cut(s) | 231, 232, 426 |
| BmsI | GCATC | 4 cut(s) | 238, 255, 439, 454 |
| BmtI | GCTAGC | 1 cut(s) | 125 |
| BpiI | GAAGAC | 1 cut(s) | 316 |
| BpmI | CTGGAG | 1 cut(s) | 447 |
| BpuMI | CCSGG | 2 cut(s) | 231, 232 |
| BsaJI | CCNNGG | 1 cut(s) | 230 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 12, 42 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 431 |
| Bse3DI | GCAATG | 2 cut(s) | 56, 213 |
| BseBI | CCWGG | 1 cut(s) | 426 |
| BseDI | CCNNGG | 1 cut(s) | 230 |
| BseGI | GGATG | 1 cut(s) | 240 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BseMI | GCAATG | 2 cut(s) | 56, 213 |
| BseRI | GAGGAG | 1 cut(s) | 67 |
| BseSI | GKGCMC | 1 cut(s) | 437 |
| BseXI | GCAGC | 3 cut(s) | 56, 427, 439 |
| BshFI | GGCC | 1 cut(s) | 272 |
| BshNI | GGYRCC | 1 cut(s) | 110 |
| BsiHKCI | CYCGRG | 1 cut(s) | 230 |
| BsiSI | CCGG | 1 cut(s) | 231 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsnI | GGCC | 1 cut(s) | 272 |
| BsoBI | CYCGRG | 1 cut(s) | 230 |
| Bsp1286I | GDGCHC | 1 cut(s) | 437 |
| BspANI | GGCC | 1 cut(s) | 272 |
| BspLI | GGNNCC | 2 cut(s) | 22, 112 |
| BspOI | GCTAGC | 1 cut(s) | 125 |
| BspT107I | GGYRCC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 2 cut(s) | 56, 213 |
| BssECI | CCNNGG | 1 cut(s) | 230 |
| Bst2UI | CCWGG | 1 cut(s) | 426 |
| Bst4CI | ACNGT | 1 cut(s) | 365 |
| Bst6I | CTCTTC | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 2 cut(s) | 123, 270 |
| BstDEI | CTNAG | 2 cut(s) | 353, 413 |
| BstF5I | GGATG | 1 cut(s) | 240 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 257, 449 |
| BstNI | CCWGG | 1 cut(s) | 426 |
| BstSCI | CCNGG | 3 cut(s) | 229, 230, 424 |
| BstSLI | GKGCMC | 1 cut(s) | 437 |
| BstV1I | GCAGC | 3 cut(s) | 56, 427, 439 |
| BstV2I | GAAGAC | 1 cut(s) | 316 |
| BsuRI | GGCC | 1 cut(s) | 272 |
| BtsCI | GGATG | 1 cut(s) | 240 |
| BtsIMutI | CAGTG | 1 cut(s) | 308 |
| Cac8I | GCNNGC | 2 cut(s) | 123, 270 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| Cfr9I | CCCGGG | 1 cut(s) | 230 |
| Csp6I | GTAC | 1 cut(s) | 111 |
| CviAII | CATG | 2 cut(s) | 10, 377 |
| CviJI | RGCY | 7 cut(s) | 23, 69, 125, 200, 272, 393, 440 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 69, 125, 200, 272, 393, 440 |
| CviQI | GTAC | 1 cut(s) | 111 |
| DdeI | CTNAG | 2 cut(s) | 353, 413 |
| Eam1104I | CTCTTC | 1 cut(s) | 248 |
| EarI | CTCTTC | 1 cut(s) | 248 |
| Eco88I | CYCGRG | 1 cut(s) | 230 |
| EcoO109I | RGGNCCY | 1 cut(s) | 271 |
| EcoRII | CCWGG | 1 cut(s) | 424 |
| FaeI | CATG | 2 cut(s) | 13, 380 |
| FaiI | YATR | 3 cut(s) | 11, 163, 378 |
| FatI | CATG | 2 cut(s) | 9, 376 |
| Fnu4HI | GCNGC | 3 cut(s) | 70, 441, 453 |
| FokI | GGATG | 1 cut(s) | 247 |
| Fsp4HI | GCNGC | 3 cut(s) | 70, 441, 453 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GluI | GCNGC | 3 cut(s) | 70, 441, 453 |
| GsuI | CTGGAG | 1 cut(s) | 447 |
| HaeIII | GGCC | 1 cut(s) | 272 |
| HapII | CCGG | 1 cut(s) | 231 |
| Hin1II | CATG | 2 cut(s) | 13, 380 |
| HinfI | GANTC | 5 cut(s) | 46, 222, 293, 302, 341 |
| HpaII | CCGG | 1 cut(s) | 231 |
| HphI | GGTGA | 1 cut(s) | 398 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 463 |
| HpyAV | CCTTC | 1 cut(s) | 473 |
| HpyCH4III | ACNGT | 1 cut(s) | 365 |
| HpyCH4V | TGCA | 6 cut(s) | 13, 56, 155, 206, 218, 268 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 257, 449 |
| HpyF3I | CTNAG | 2 cut(s) | 353, 413 |
| Hsp92II | CATG | 2 cut(s) | 13, 380 |
| KpnI | GGTACC | 1 cut(s) | 114 |
| LmnI | GCTCC | 3 cut(s) | 20, 138, 398 |
| LpnPI | CCDG | 6 cut(s) | 239, 244, 254, 411, 438, 441 |
| Lsp1109I | GCAGC | 3 cut(s) | 56, 427, 439 |
| LweI | GCATC | 4 cut(s) | 238, 255, 439, 454 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeIII | GTNAC | 2 cut(s) | 386, 416 |
| MboII | GAAGA | 2 cut(s) | 265, 316 |
| MhlI | GDGCHC | 1 cut(s) | 437 |
| MluCI | AATT | 1 cut(s) | 14 |
| MlyI | GAGTC | 3 cut(s) | 40, 296, 335 |
| MmeI | TCCRAC | 2 cut(s) | 127, 321 |
| MnlI | CCTC | 5 cut(s) | 34, 88, 128, 424, 469 |
| MseI | TTAA | 2 cut(s) | 243, 490 |
| MslI | CAYNNNNRTG | 1 cut(s) | 381 |
| MspA1I | CMGCKG | 1 cut(s) | 440 |
| MspI | CCGG | 1 cut(s) | 231 |
| MspR9I | CCNGG | 3 cut(s) | 231, 232, 426 |
| MvaI | CCWGG | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 257, 449 |
| NciI | CCSGG | 2 cut(s) | 231, 232 |
| NheI | GCTAGC | 1 cut(s) | 121 |
| NlaIII | CATG | 2 cut(s) | 13, 380 |
| NlaIV | GGNNCC | 2 cut(s) | 22, 112 |
| NmuCI | GTSAC | 2 cut(s) | 386, 416 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 297 |
| PfeI | GAWTC | 2 cut(s) | 222, 293 |
| PflFI | GACNNNGTC | 1 cut(s) | 378 |
| PfoI | TCCNGGA | 1 cut(s) | 424 |
| PkrI | GCNGC | 3 cut(s) | 71, 442, 454 |
| PleI | GAGTC | 3 cut(s) | 40, 296, 335 |
| PpsI | GAGTC | 3 cut(s) | 40, 296, 335 |
| Psp6I | CCWGG | 1 cut(s) | 424 |
| PspGI | CCWGG | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 2 cut(s) | 22, 112 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| PsyI | GACNNNGTC | 1 cut(s) | 378 |
| PvuII | CAGCTG | 1 cut(s) | 440 |
| RsaI | GTAC | 1 cut(s) | 112 |
| RsaNI | GTAC | 1 cut(s) | 111 |
| RseI | CAYNNNNRTG | 1 cut(s) | 381 |
| SaqAI | TTAA | 2 cut(s) | 243, 490 |
| SatI | GCNGC | 3 cut(s) | 70, 441, 453 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| SchI | GAGTC | 3 cut(s) | 40, 296, 335 |
| ScrFI | CCNGG | 3 cut(s) | 231, 232, 426 |
| SduI | GDGCHC | 1 cut(s) | 437 |
| SetI | ASST | 6 cut(s) | 71, 127, 202, 395, 442, 489 |
| SfaNI | GCATC | 4 cut(s) | 238, 255, 439, 454 |
| SmaI | CCCGGG | 1 cut(s) | 232 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 381 |
| Sse9I | AATT | 1 cut(s) | 14 |
| SspMI | CTAG | 1 cut(s) | 122 |
| StyD4I | CCNGG | 3 cut(s) | 229, 230, 424 |
| TaaI | ACNGT | 1 cut(s) | 365 |
| TaqI | TCGA | 1 cut(s) | 291 |
| TaqII | GACCGA | 1 cut(s) | 170 |
| TasI | AATT | 1 cut(s) | 14 |
| TfiI | GAWTC | 2 cut(s) | 222, 293 |
| Tru1I | TTAA | 2 cut(s) | 243, 490 |
| Tru9I | TTAA | 2 cut(s) | 243, 490 |
| TscAI | CASTG | 1 cut(s) | 315 |
| TseFI | GTSAC | 2 cut(s) | 386, 416 |
| TseI | GCWGC | 3 cut(s) | 69, 440, 452 |
| Tsp45I | GTSAC | 2 cut(s) | 386, 416 |
| TspDTI | ATGAA | 1 cut(s) | 316 |
| TspMI | CCCGGG | 1 cut(s) | 230 |
| TspRI | CASTG | 1 cut(s) | 315 |
| Tth111I | GACNNNGTC | 1 cut(s) | 378 |
| XmaI | CCCGGG | 1 cut(s) | 230 |
| XspI | CTAG | 1 cut(s) | 122 |