Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Forward (+)

18913903 .. 18917180

Gene Structure 3278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG198400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAGAATCGACCCAATAATGAGACCCAAATCCCTGAAAGGGAATTGGAGCTCCAGGTTGAAGTTCAAGGCCAAGCTACGATTACCCACCGTCCTCGTTTTCTGCTCTTTCTTCTTCCTCGCCGGTTTCTTCATCTCCTCTCTTTTCTCTCAGGATGTAGATGGTGGTGGCAATACACCCAGAACGAGGTTGCTGGAAACAGAGTACGAAACGCTGCCGTTTGGGGAGACTGGAGACGAGTCTTTAACTTCAATTCCCTTCCAGGTGTTGAGCTGGTATCCGCGAGCATTATATTTTCCTAATTTTGCTTCTGCGGAGCAATGTGAGACTATAATCGATTTGGCAAAGCCGGCCCTTAAACCCTCGACCTTGGCTTTGAGAGAGGGAGAGACTGAGGAGAACACAAAGGGAATTAGAACAAGTTCTGGGATGTTTCTTTCGGCTTATCAAGACAAGTCTGGGACTTTGGATGTCATTGAGGAAAAGATTGCAAGAGCAACAATGATTCCCAGGACCCATGGAGAGGCATTCAACGTCTTGCGTTATGAGATTGGGCAGAAGTATAATTCTCATTATGATGCATTCCACCCGGAGGAATATGGTCCACAGACAAGCCAAAGGGTTGCATCATTCCTGTTGTATTTAACTGATGTTGAAGAAGGCGGGGAAACAATGTTTCCATACGAGAGTGGCTTGAACCTGGATGGAAAACATGATTCTCAGGAATGTATGGGTTTGAGAGTGAAGCCGCGTAAAGGAGATGGCCTTCTGTTTTATTCATTGTTCCCTAACGGTTCCATTGACCCTGTTAGTCTTTCATCCCATCATTGTCATTGCAATTTTTCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

283

Amino Acids

31.85

Weight (kDa)

5.7

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	178 - 277	1.9e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	283, 751
AciI	CCGC	4 cut(s)	281, 314, 663, 749
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	5 cut(s)	39, 186, 523, 592, 755
AgsI	TTSAA	6 cut(s)	61, 67, 252, 532, 656, 697
AjnI	CCWGG	4 cut(s)	53, 261, 509, 699
AluBI	AGCT	3 cut(s)	51, 76, 273
AluI	AGCT	3 cut(s)	51, 76, 273
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	5 cut(s)	16, 221, 228, 320, 383
AoxI	GGCC	3 cut(s)	69, 351, 763
ApeKI	GCWGC	1 cut(s)	214
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
Asp700I	GAANNNNTTC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	352, 513, 602
AsuC2I	CCSGG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	513, 602
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	4 cut(s)	155, 698, 755, 831
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	4 cut(s)	55, 263, 511, 701
BciVI	GTATCC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	5 cut(s)	16, 221, 228, 320, 383
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	2 cut(s)	215, 749
BlsI	GCNGC	2 cut(s)	216, 750
Bme1390I	CCNGG	5 cut(s)	55, 263, 511, 590, 701
Bme18I	GGWCC	2 cut(s)	513, 602
BmgT120I	GGNCC	3 cut(s)	352, 513, 602
BmiI	GGNNCC	2 cut(s)	515, 796
BmrFI	CCNGG	5 cut(s)	55, 263, 511, 590, 701
BmsI	GCATC	2 cut(s)	568, 635
BpmI	CTGGAG	2 cut(s)	37, 252
BpuMI	CCSGG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	369, 509, 517
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 186, 523, 592, 755
Bse118I	RCCGGY	2 cut(s)	122, 349
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	2 cut(s)	326, 832
BseBI	CCWGG	4 cut(s)	55, 263, 511, 701
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	3 cut(s)	369, 509, 517
BseGI	GGATG	5 cut(s)	160, 435, 475, 709, 818
BseLI	CCNNNNNNNGG	5 cut(s)	39, 186, 523, 592, 755
BseMI	GCAATG	2 cut(s)	326, 832
BseMII	CTCAG	3 cut(s)	164, 384, 734
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	2 cut(s)	127, 410
BseXI	GCAGC	1 cut(s)	201
Bsh1236I	CGCG	2 cut(s)	283, 751
BshFI	GGCC	3 cut(s)	71, 353, 765
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	123, 350, 590
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	5 cut(s)	39, 186, 523, 592, 755
BsmAI	GTCTC	5 cut(s)	16, 221, 228, 320, 383
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	2 cut(s)	527, 581
BsnI	GGCC	3 cut(s)	71, 353, 765
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	4 cut(s)	281, 314, 663, 749
BspANI	GGCC	3 cut(s)	71, 353, 765
BspCNI	CTCAG	3 cut(s)	163, 385, 733
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	2 cut(s)	283, 751
BspLI	GGNNCC	2 cut(s)	515, 796
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	2 cut(s)	326, 832
BsrFI	RCCGGY	2 cut(s)	122, 349
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	2 cut(s)	122, 349
BssECI	CCNNGG	3 cut(s)	369, 509, 517
BssT1I	CCWWGG	2 cut(s)	369, 517
Bst2UI	CCWGG	4 cut(s)	55, 263, 511, 701
Bst4CI	ACNGT	2 cut(s)	91, 794
BstC8I	GCNNGC	2 cut(s)	285, 351
BstDEI	CTNAG	3 cut(s)	150, 393, 720
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	5 cut(s)	160, 435, 475, 709, 818
BstFNI	CGCG	2 cut(s)	283, 751
BstMAI	GTCTC	5 cut(s)	16, 221, 228, 320, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	4 cut(s)	55, 263, 511, 701
BstSCI	CCNGG	5 cut(s)	53, 261, 509, 588, 699
BstUI	CGCG	2 cut(s)	283, 751
BstV1I	GCAGC	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	71, 353, 765
BsuTUI	ATCGAT	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	5 cut(s)	160, 435, 475, 709, 818
Cac8I	GCNNGC	2 cut(s)	285, 351
Cfr10I	RCCGGY	2 cut(s)	122, 349
Cfr13I	GGNCC	3 cut(s)	352, 513, 602
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	518, 713
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	150, 393, 720
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	369, 517
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	513, 602
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	4 cut(s)	53, 261, 509, 699
EcoT14I	CCWWGG	2 cut(s)	369, 517
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	369, 517
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	2 cut(s)	521, 716
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	2 cut(s)	517, 712
FauI	CCCGC	1 cut(s)	656
Fnu4HI	GCNGC	2 cut(s)	215, 749
FokI	GGATG	5 cut(s)	167, 442, 482, 716, 805
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	215, 749
GluI	GCNGC	2 cut(s)	215, 749
GsuI	CTGGAG	2 cut(s)	37, 252
HaeIII	GGCC	3 cut(s)	71, 353, 765
HapII	CCGG	3 cut(s)	123, 350, 590
Hin1II	CATG	2 cut(s)	521, 716
HinfI	GANTC	4 cut(s)	6, 239, 505, 716
HpaII	CCGG	3 cut(s)	123, 350, 590
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188III	TCNNGA	3 cut(s)	152, 449, 722
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	3 cut(s)	268, 653, 776
HpyCH4III	ACNGT	2 cut(s)	91, 794
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	4 cut(s)	491, 581, 626, 837
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	3 cut(s)	150, 393, 720
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	2 cut(s)	521, 716
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	48, 56, 316
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	2 cut(s)	568, 635
MaeII	ACGT	1 cut(s)	534
MboII	GAAGA	4 cut(s)	103, 106, 121, 668
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	6 cut(s)	43, 252, 301, 411, 565, 838
MlyI	GAGTC	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	583
MroNI	GCCGGC	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	4 cut(s)	245, 357, 644, 850
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	3 cut(s)	123, 350, 590
MspR9I	CCNGG	5 cut(s)	55, 263, 511, 590, 701
Mva1269I	GAATGC	2 cut(s)	527, 581
MvaI	CCWGG	4 cut(s)	55, 263, 511, 701
MvnI	CGCG	2 cut(s)	283, 751
MwoI	GCNNNNNNNGC	1 cut(s)	350
NaeI	GCCGGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	517
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	521, 716
NlaIV	GGNNCC	2 cut(s)	515, 796
NsiI	ATGCAT	1 cut(s)	583
PctI	GAATGC	2 cut(s)	527, 581
PdiI	GCCGGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	6, 505, 716
PkrI	GCNGC	2 cut(s)	216, 750
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	4 cut(s)	53, 261, 509, 699
PspGI	CCWGG	4 cut(s)	53, 261, 509, 699
PspN4I	GGNNCC	2 cut(s)	515, 796
PspPI	GGNCC	3 cut(s)	352, 513, 602
PspPPI	RGGWCCY	1 cut(s)	513
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	245, 357, 644, 850
SatI	GCNGC	2 cut(s)	215, 749
Sau96I	GGNCC	3 cut(s)	352, 513, 602
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	5 cut(s)	55, 263, 511, 590, 701
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	53, 59, 78, 191, 267, 275, 371, 537, 702
SfaNI	GCATC	2 cut(s)	568, 635
SinI	GGWCC	2 cut(s)	513, 602
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	6 cut(s)	43, 252, 301, 411, 565, 838
SsiI	CCGC	4 cut(s)	281, 314, 663, 749
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	5 cut(s)	53, 261, 509, 588, 699
StyI	CCWWGG	2 cut(s)	369, 517
TaaI	ACNGT	2 cut(s)	91, 794
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	3 cut(s)	9, 336, 365
TasI	AATT	6 cut(s)	43, 252, 301, 411, 565, 838
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	3 cut(s)	6, 505, 716
Tru1I	TTAA	4 cut(s)	245, 357, 644, 850
Tru9I	TTAA	4 cut(s)	245, 357, 644, 850
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	121, 768, 807
VpaK11BI	GGWCC	2 cut(s)	513, 602
XmnI	GAANNNNTTC	1 cut(s)	421
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.