Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009888

Physical Location & Seq

Genomic Coordinates Reverse (-)

22910590 .. 22914381

Gene Structure 3792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G224300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGAGCCAAAAGCGGGAAAGGGAATTGGAGCTCCAAGTTCAAGTTGAAGTCCAAACTTGGGTTACCAACCACCTTCATCTTATGCTCCTTCTTCTTCCTCGCTGGCTTCTACGGCTCATCTCTCCTCTCTCAGGATGTGGGGGGTGGTGATAATAGGCTAAGAACGAGACTGTTGGAAACAGAGTATACTTCGATGCCTTATGGAGAGACCGGTGACGATTCTTTAACTTCCATTCCCTTTCAGGTCTTGAGTTGGTATCCGCGTGCACTATATTTTCCTAATTTTGCAACTGCGGAGCAATGTGAAAGCATAATCGGTATGGCCAAGCCAAGCCTTAAACCATCAACTTTGGCTTTGCGAGAGGGTGAGACAGAGGAGAACACGAAGGATATACGAACAAGTTCTGGCATGTTTCTTTCTGCTTCTGATGATAAATCTGGGACTCTGGATGTAATTGAGGAAAAGATTGCAAGAGCAACAATGCTTCCCAGGACCTATGGAGAGGCATTCAACATCTTACGCTATGAGATCGGTCAGAAGTATAATTCTCATTACGATGCGTTCCACCCTGATCAATATGGTCCACAGAAGAGCCAAAGGGTTGCATCATTCTTGTTGTATTTAACTGATGTTGAAGAAGGTGGTGAAACCATGTTTCCTTATGAGAATGGCTCAAACATGGATGGAAACTATGATTTTCGGGAATGTGTTGGTTTGAAAGTGAAGCCACGCAAAGGGGATGGACTTTTATTTTATTCATTGCTCCCAAATGGTACAATTGATATGTTATCAATACATGGGGGCTGTCCTGTAATTGAAGGGGAAAAATGGGTGGCTACAAAGTGGATCAGGGATCAAGAACAAGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

292

Amino Acids

32.64

Weight (kDa)

5.22

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23096
fragaria_vesca	FvH4_1g17210 FvH4_1g17210 FvH4_1g17210
malus_domestica	MD02G1182100.v1.1 MD15G1293300.v1.1
prunus_persica	Prupe.6G224300_v2.0.a1
pyrus_communis	pycom15g25630
rosa_chinensis	RchiOBHm_Chr2g0107361
rosa_laevigata	RLG00000017573
rosa_multiflora	Rmu_co8505661.1_g000001 Rmu_sc0010952.1_g000012
rosa_roxburghii	Rroxscaffold_2G00136400
rosa_rugosa	Rorug02G0142600 Rorug03G0188400
rosa_samantha	Rh2AG193100 Rh2BG205300 Rh2BG205400 Rh2CG198400 Rh2DG200400
rosa_wichuraiana	Rw2G015300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	1 cut(s)	265
AciI	CCGC	3 cut(s)	15, 263, 296
AclWI	GGATC	2 cut(s)	857, 864
AcoI	YGGCCR	1 cut(s)	324
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	4 cut(s)	15, 60, 133, 737
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	6 cut(s)	43, 49, 514, 638, 721, 821
AjnI	CCWGG	1 cut(s)	491
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw21I	GWGCWC	2 cut(s)	35, 271
Alw26I	GTCTC	3 cut(s)	163, 203, 365
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	857, 864
AoxI	GGCC	1 cut(s)	324
ApaLI	GTGCAC	1 cut(s)	267
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	495, 584
AsuHPI	GGTGA	4 cut(s)	161, 227, 380, 659
AvaII	GGWCC	2 cut(s)	495, 584
BaeGI	GKGCMC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	35, 271
BccI	CCATC	3 cut(s)	352, 680, 737
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	493
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	3 cut(s)	163, 203, 365
BfuI	GTATCC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	2 cut(s)	495, 584
BmgT120I	GGNCC	2 cut(s)	495, 584
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	3 cut(s)	186, 550, 617
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpuEI	CTTGAG	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 60, 133, 737
Bse118I	RCCGGY	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	308, 761
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	4 cut(s)	142, 457, 691, 748
BseLI	CCNNNNNNNGG	4 cut(s)	15, 60, 133, 737
BseMI	GCAATG	2 cut(s)	308, 761
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	116, 392
BseSI	GKGCMC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	326
BshTI	ACCGGT	1 cut(s)	212
BsiHKAI	GWGCWC	2 cut(s)	35, 271
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	15, 60, 133, 737
BsmAI	GTCTC	3 cut(s)	163, 203, 365
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	35, 271
Bsp143I	GATC	4 cut(s)	531, 574, 849, 856
BspACI	CCGC	3 cut(s)	15, 263, 296
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	857, 864
BspQI	GCTCTTC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	308, 761
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	4 cut(s)	531, 574, 849, 856
BssNAI	GTATAC	1 cut(s)	189
Bst1107I	GTATAC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	106, 267
BstDEI	CTNAG	2 cut(s)	132, 161
BstEII	GGTNACC	1 cut(s)	63
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	4 cut(s)	142, 457, 691, 748
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	4 cut(s)	534, 577, 852, 859
BstMAI	GTCTC	3 cut(s)	163, 203, 365
BstMBI	GATC	4 cut(s)	531, 574, 849, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	415
BstPI	GGTNACC	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	1 cut(s)	265
BstZ17I	GTATAC	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	4 cut(s)	142, 457, 691, 748
Cac8I	GCNNGC	2 cut(s)	106, 267
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	495, 584
Csp6I	GTAC	1 cut(s)	777
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	4 cut(s)	412, 655, 682, 800
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	2 cut(s)	132, 161
DpnI	GATC	4 cut(s)	533, 576, 851, 858
DpnII	GATC	4 cut(s)	531, 574, 849, 856
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	495, 584
Eco53kI	GAGCTC	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	495
EcoO65I	GGTNACC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	4 cut(s)	415, 658, 685, 803
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	4 cut(s)	411, 654, 681, 799
FauI	CCCGC	1 cut(s)	8
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	188
FokI	GGATG	4 cut(s)	149, 464, 698, 755
FriOI	GRGCYC	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	4 cut(s)	415, 658, 685, 803
HinfI	GANTC	2 cut(s)	221, 445
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	4 cut(s)	161, 227, 380, 659
Hpy166II	GTNNAC	3 cut(s)	189, 269, 587
Hpy188I	TCNGA	2 cut(s)	430, 540
Hpy188III	TCNNGA	5 cut(s)	134, 250, 449, 704, 860
Hpy8I	GTNNAC	3 cut(s)	189, 269, 587
HpyAV	CCTTC	5 cut(s)	85, 100, 382, 635, 815
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	269, 290, 473, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	132, 161
Hsp92II	CATG	4 cut(s)	415, 658, 685, 803
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	531, 574, 849, 856
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	5 cut(s)	30, 38, 92, 298, 771
LweI	GCATC	3 cut(s)	186, 550, 617
MaeIII	GTNAC	2 cut(s)	63, 215
MalI	GATC	4 cut(s)	533, 576, 851, 858
MboI	GATC	4 cut(s)	531, 574, 849, 856
MboII	GAAGA	4 cut(s)	85, 88, 604, 650
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	2 cut(s)	35, 271
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	6 cut(s)	25, 283, 456, 547, 780, 816
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	110, 137, 358, 370, 454, 499, 862
Mox20I	TGGCCA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	227, 339, 626
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	326
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	493
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	493
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	4 cut(s)	531, 574, 849, 856
NlaIII	CATG	4 cut(s)	415, 658, 685, 803
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	212
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	491
PspEI	GGTNACC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	491
PspPI	GGNCC	2 cut(s)	495, 584
PspPPI	RGGWCCY	1 cut(s)	495
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	3 cut(s)	227, 339, 626
Sau3AI	GATC	4 cut(s)	531, 574, 849, 856
Sau96I	GGNCC	2 cut(s)	495, 584
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	2 cut(s)	35, 271
SetI	ASST	5 cut(s)	35, 77, 249, 500, 646
SfaNI	GCATC	3 cut(s)	186, 550, 617
SinI	GGWCC	2 cut(s)	495, 584
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	6 cut(s)	25, 283, 456, 547, 780, 816
SsiI	CCGC	3 cut(s)	15, 263, 296
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	194
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	6 cut(s)	25, 283, 456, 547, 780, 816
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	227, 339, 626
Tru9I	TTAA	3 cut(s)	227, 339, 626
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	67, 750
VneI	GTGCAC	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	495, 584
XagI	CCTNNNNNAGG	1 cut(s)	131
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.