AT2G23310

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005227
Physical Location & Seq
Forward (+)
9917443 .. 9919379
1937 bp
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UTR
Exon/CDS
Intron
AT2G23310.1

Sequence Viewer

Length: 639 bp
ATGGAATCCGCAGCAACGGCTGTTGTACCTCCGGCAGCCGCCGCCACCACCGCCACCGCCACCGATGATAATCTCCAATCAAGCGACTCATCATCTCCCGCCGACGCCGTTAACCGATTGATCCACGCCTTTTCGCAGCGACAACAACATCTTCTCGACAAAACGGTTCCTCACGTTCTCTATCGATGGATCGCATGTCTCTGTGTTGTATTGATCTACATCGTTCGTGTTTACTTTGTGGAAGGCTTCTACATCATCACTTACGCCATCGGCATCTACCTTTTGAATCTCATCATTGCTTTTCTATCTCCTCAAGAAGATCCCGAAGCTTCTCTCACTTCCGGTGGTTCTCTTCCTACTCGGAGATCCGATGAGTATCGTCCTTTCGTTCGCCGTCTCCCTGAGTTCAAATTCTGGTTATCGATCATAAGGGCTTTCATCATCGGATTTATGATGACGTTCTTCGAGGTGTTTGATGTACCTGTATTCTGGCCAATACTTCTCTTCTACTGGGTGATGTTGTTTTTCCTTACGATGAGGAAACAGATACAGCATATGATCAAATACAGATATGTCCCTTTCTCTTTTGGGAAAAAGCAGTATGGAAAGAAACCGGCTCCAACAGAGAGCAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

212

Amino Acids

24.4

Weight (kDa)

8.83

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 41 - 201 1.4e-73 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 9, 39, 42, 51, 57, 99
AclWI GGATC 4 cut(s) 115, 197, 314, 360
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 27, 480
AgsI TTSAA 2 cut(s) 286, 409
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 2 cut(s) 203, 401
AlwI GGATC 4 cut(s) 115, 197, 314, 360
AoxI GGCC 1 cut(s) 491
ApeKI GCWGC 3 cut(s) 11, 35, 136
ApoI RAATTY 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 526
BalI TGGCCA 1 cut(s) 493
BbvI GCAGC 3 cut(s) 23, 47, 148
BccI CCATC 2 cut(s) 180, 275
BceAI ACGGC 3 cut(s) 33, 92, 378
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 2 cut(s) 203, 401
BisI GCNGC 5 cut(s) 12, 36, 39, 42, 137
BlsI GCNGC 5 cut(s) 13, 37, 40, 43, 138
BmiI GGNNCC 2 cut(s) 168, 618
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 297
Bsa29I ATCGAT 2 cut(s) 184, 422
BsaBI GATNNNNATC 3 cut(s) 69, 218, 375
BsaHI GRCGYC 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 341
Bse118I RCCGGY 1 cut(s) 613
Bse1I ACTGG 1 cut(s) 515
Bse3DI GCAATG 1 cut(s) 294
Bse8I GATNNNNATC 3 cut(s) 69, 218, 375
BseCI ATCGAT 2 cut(s) 184, 422
BseJI GATNNNNATC 3 cut(s) 69, 218, 375
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 3 cut(s) 23, 47, 148
BshFI GGCC 1 cut(s) 493
BshVI ATCGAT 2 cut(s) 184, 422
BsiSI CCGG 3 cut(s) 32, 342, 614
BslFI GGGAC 1 cut(s) 560
BsmAI GTCTC 2 cut(s) 203, 401
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 1 cut(s) 493
Bsp143I GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
BspACI CCGC 6 cut(s) 9, 39, 42, 51, 57, 99
BspANI GGCC 1 cut(s) 493
BspCNI CTCAG 1 cut(s) 394
BspDI ATCGAT 2 cut(s) 184, 422
BspLI GGNNCC 2 cut(s) 168, 618
BspPI GGATC 4 cut(s) 115, 197, 314, 360
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 613
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 613
BssMI GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
BssNI GRCGYC 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 357, 509
BstACI GRCGYC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 402
BstKTI GATC 7 cut(s) 123, 192, 216, 322, 368, 426, 561
BstMAI GTCTC 2 cut(s) 203, 401
BstMBI GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
BstMWI GCNNNNNNNGC 3 cut(s) 17, 41, 50
BstNSI RCATGY 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 23, 47, 148
BstX2I RGATCY 2 cut(s) 319, 365
BstYI RGATCY 2 cut(s) 319, 365
Bsu15I ATCGAT 2 cut(s) 184, 422
BsuRI GGCC 1 cut(s) 493
BsuTUI ATCGAT 2 cut(s) 184, 422
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 1 cut(s) 637
Cfr10I RCCGGY 1 cut(s) 613
ClaI ATCGAT 2 cut(s) 184, 422
CseI GACGC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 26, 479
CviAII CATG 1 cut(s) 195
CviJI RGCY 7 cut(s) 20, 38, 246, 329, 434, 493, 617
CviKI_1 RGCY 7 cut(s) 20, 38, 246, 329, 434, 493, 617
CviQI GTAC 2 cut(s) 26, 479
DdeI CTNAG 1 cut(s) 402
DpnI GATC 7 cut(s) 122, 191, 215, 321, 367, 425, 560
DpnII GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 357, 509
EarI CTCTTC 2 cut(s) 357, 509
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 1 cut(s) 198
FaiI YATR 7 cut(s) 196, 428, 452, 555, 557, 573, 603
FaqI GGGAC 1 cut(s) 560
FatI CATG 1 cut(s) 194
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 12, 36, 39, 42, 137
Fsp4HI GCNGC 5 cut(s) 12, 36, 39, 42, 137
GluI GCNGC 5 cut(s) 12, 36, 39, 42, 137
HaeIII GGCC 1 cut(s) 493
HapII CCGG 3 cut(s) 32, 342, 614
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 198
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 3 cut(s) 5, 86, 286
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 3 cut(s) 32, 342, 614
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 2 cut(s) 112, 232
Hpy188I TCNGA 3 cut(s) 363, 370, 446
Hpy188III TCNNGA 3 cut(s) 155, 314, 323
Hpy8I GTNNAC 2 cut(s) 112, 232
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 174, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 41, 50
HpyF3I CTNAG 1 cut(s) 402
HpySE526I ACGT 2 cut(s) 174, 458
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 558
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
LmnI GCTCC 1 cut(s) 622
LpnPI CCDG 8 cut(s) 45, 355, 400, 414, 475, 495, 496, 627
Lsp1109I GCAGC 3 cut(s) 23, 47, 148
LweI GCATC 1 cut(s) 282
MaeII ACGT 2 cut(s) 174, 458
MalI GATC 7 cut(s) 122, 191, 215, 321, 367, 425, 560
MboI GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
MboII GAAGA 5 cut(s) 143, 329, 344, 454, 496
MflI RGATCY 2 cut(s) 319, 365
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 1 cut(s) 410
MluNI TGGCCA 1 cut(s) 493
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 5 cut(s) 39, 180, 321, 460, 531
Mox20I TGGCCA 1 cut(s) 493
MscI TGGCCA 1 cut(s) 493
MseI TTAA 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 493
MspI CCGG 3 cut(s) 32, 342, 614
MwoI GCNNNNNNNGC 3 cut(s) 17, 41, 50
NdeI CATATG 1 cut(s) 555
NdeII GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 2 cut(s) 168, 618
NspI RCATGY 1 cut(s) 198
PfeI GAWTC 2 cut(s) 5, 286
PkrI GCNGC 5 cut(s) 13, 37, 40, 43, 138
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 168, 618
PsuI RGATCY 2 cut(s) 319, 365
RsaI GTAC 2 cut(s) 27, 480
RsaNI GTAC 2 cut(s) 26, 479
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 5 cut(s) 12, 36, 39, 42, 137
Sau3AI GATC 7 cut(s) 120, 189, 213, 319, 365, 423, 558
SchI GAGTC 1 cut(s) 80
SetI ASST 7 cut(s) 31, 177, 282, 331, 461, 471, 484
SfaNI GCATC 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 1 cut(s) 410
SsiI CCGC 6 cut(s) 9, 39, 42, 51, 57, 99
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 2 cut(s) 177, 461
TaqI TCGA 4 cut(s) 156, 184, 422, 465
TasI AATT 1 cut(s) 410
TauI GCSGC 2 cut(s) 41, 44
TfiI GAWTC 2 cut(s) 5, 286
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 637
TseI GCWGC 3 cut(s) 11, 35, 136
TspDTI ATGAA 1 cut(s) 427
TspRI CASTG 1 cut(s) 637
XapI RAATTY 1 cut(s) 410
XceI RCATGY 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.