Rh2CG192000

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005227
Physical Location & Seq
Reverse (-)
18102944 .. 18113929
10986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG192000.1

Sequence Viewer

Length: 648 bp
ATGGACACCGGAGCGGCGGGCGTGGGTCTCGCCGCCACCGCCGACCCGTCGTCTGAGGGATCGCCGCTCGACGCATTCCAGGCATTGAGCTTCGGCGTCTCGCGCCGATTTCAGCACTTGCTCGACAAAACGACGCCGCACCTCCTCTACCGCTGGCTCGCCACCCTCGCCGTCGCCTTGGTCTACGCCTTCCGCATCTACCGGGTCCAGGGATTCTACGTCGTGTCGTACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCAGCCTCCCCACCCGCGGATCCGACGAGTTCCGTCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCGTGATGACATTCTTCAGTGCATTTGATGTGCCTGTGTTCTGGCCCATTCTTCTCTTTTACTGGCTTGTGCTCTTTGTTCTCACAATGAGGAGGCAGATCGTGCACATGGTTAAGTACAAATATGTTCCCTTCTCTATTGGCAAGCAGGTAATGCTCTCGTCGCCAAAGCAAAGGCGTCTTTTGTTACTTGTCAATATCATGCTGATGCGTCGAGCCTTTGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

215

Amino Acids

24.68

Weight (kDa)

9.85

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 33 - 189 1.3e-74 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccBSI CCGCTC 2 cut(s) 14, 67
AccI GTMKAC 2 cut(s) 183, 285
AccII CGCG 2 cut(s) 103, 333
AclWI GGATC 5 cut(s) 67, 248, 289, 330, 343
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 418
AcyI GRCGYC 4 cut(s) 96, 134, 364, 595
AfaI GTAC 3 cut(s) 230, 389, 536
AfiI CCNNNNNNNGG 2 cut(s) 208, 332
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 78, 207
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 2 cut(s) 492, 525
Alw26I GTCTC 2 cut(s) 32, 103
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 5 cut(s) 67, 248, 289, 330, 343
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 2 cut(s) 313, 461
ApaLI GTGCAC 1 cut(s) 521
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 205, 314, 462
AsuC2I CCSGG 2 cut(s) 203, 290
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 525
BamHI GGATCC 1 cut(s) 335
Bbv12I GWGCWC 2 cut(s) 492, 525
BceAI ACGGC 3 cut(s) 155, 247, 328
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 2 cut(s) 80, 209
BcnI CCSGG 2 cut(s) 203, 290
BcoDI GTCTC 2 cut(s) 32, 103
BfuAI ACCTGC 1 cut(s) 556
BisI GCNGC 4 cut(s) 15, 33, 65, 137
BlsI GCNGC 4 cut(s) 16, 34, 66, 138
Bme1390I CCNGG 4 cut(s) 80, 203, 209, 290
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 3 cut(s) 205, 314, 462
BmiI GGNNCC 3 cut(s) 206, 316, 337
BmrFI CCNGG 4 cut(s) 80, 203, 209, 290
BmsI GCATC 2 cut(s) 204, 615
BpuMI CCSGG 2 cut(s) 203, 290
BsaHI GRCGYC 4 cut(s) 96, 134, 364, 595
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 177, 208, 331
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 332
Bse1I ACTGG 1 cut(s) 485
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 80, 209
BseDI CCNNGG 3 cut(s) 177, 208, 331
BseLI CCNNNNNNNGG 2 cut(s) 208, 332
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 2 cut(s) 45, 293
BseNI ACTGG 1 cut(s) 485
BseRI GAGGAG 4 cut(s) 134, 239, 267, 523
BseSI GKGCMC 1 cut(s) 525
BseYI CCCAGC 1 cut(s) 317
Bsh1236I CGCG 2 cut(s) 103, 333
BshFI GGCC 2 cut(s) 315, 463
BsiHKAI GWGCWC 2 cut(s) 492, 525
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 9, 202, 290
BsiWI CGTACG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 208, 332
BsmAI GTCTC 2 cut(s) 32, 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 2 cut(s) 315, 463
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 492, 525
Bsp143I GATC 5 cut(s) 59, 240, 294, 335, 516
BspANI GGCC 2 cut(s) 315, 463
BspCNI CTCAG 2 cut(s) 46, 292
BspFNI CGCG 2 cut(s) 103, 333
BspLI GGNNCC 3 cut(s) 206, 316, 337
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 5 cut(s) 67, 248, 289, 330, 343
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 2 cut(s) 14, 67
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 177, 208, 331
BssMI GATC 5 cut(s) 59, 240, 294, 335, 516
BssNI GRCGYC 4 cut(s) 96, 134, 364, 595
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 80, 209
BstACI GRCGYC 4 cut(s) 96, 134, 364, 595
BstAPI GCANNNNNTGC 2 cut(s) 520, 571
BstC8I GCNNGC 4 cut(s) 19, 155, 159, 563
BstDEI CTNAG 2 cut(s) 54, 279
BstDSI CCRYGG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 103, 333
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 5 cut(s) 62, 243, 297, 338, 519
BstMAI GTCTC 2 cut(s) 32, 103
BstMBI GATC 5 cut(s) 59, 240, 294, 335, 516
BstMWI GCNNNNNNNGC 7 cut(s) 38, 80, 102, 167, 520, 571, 580
BstNI CCWGG 2 cut(s) 80, 209
BstSCI CCNGG 4 cut(s) 78, 201, 207, 288
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 2 cut(s) 103, 333
BstX2I RGATCY 3 cut(s) 240, 294, 335
BstYI RGATCY 3 cut(s) 240, 294, 335
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 2 cut(s) 315, 463
BtgI CCRYGG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 442
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 4 cut(s) 19, 155, 159, 563
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 205, 314, 462
Cfr42I CCGCGG 1 cut(s) 334
CseI GACGC 6 cut(s) 80, 85, 142, 372, 584, 617
Csp6I GTAC 3 cut(s) 229, 388, 535
CviAII CATG 2 cut(s) 526, 619
CviJI RGCY 9 cut(s) 90, 157, 234, 267, 315, 321, 463, 484, 635
CviKI_1 RGCY 9 cut(s) 90, 157, 234, 267, 315, 321, 463, 484, 635
CviQI GTAC 3 cut(s) 229, 388, 535
DdeI CTNAG 2 cut(s) 54, 279
DpnI GATC 5 cut(s) 61, 242, 296, 337, 518
DpnII GATC 5 cut(s) 59, 240, 294, 335, 516
DraI TTTAAA 1 cut(s) 379
DriI GACNNNNNGTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 418
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 78, 207
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 529, 622
FaiI YATR 3 cut(s) 527, 543, 620
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 525, 618
FauI CCCGC 2 cut(s) 10, 338
FblI GTMKAC 2 cut(s) 183, 285
Fnu4HI GCNGC 4 cut(s) 15, 33, 65, 137
Fsp4HI GCNGC 4 cut(s) 15, 33, 65, 137
GlaI GCGC 1 cut(s) 104
GluI GCNGC 4 cut(s) 15, 33, 65, 137
GsaI CCCAGC 1 cut(s) 321
HaeIII GGCC 2 cut(s) 315, 463
HapII CCGG 3 cut(s) 9, 202, 290
HgaI GACGC 6 cut(s) 80, 85, 142, 372, 584, 617
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 4 cut(s) 96, 134, 364, 595
Hin1II CATG 2 cut(s) 529, 622
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 213
HpaII CCGG 3 cut(s) 9, 202, 290
Hpy166II GTNNAC 3 cut(s) 184, 286, 523
Hpy188I TCNGA 3 cut(s) 55, 310, 340
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 3 cut(s) 184, 286, 523
HpyAV CCTTC 3 cut(s) 199, 364, 559
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 411, 440, 523
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 80, 102, 167, 520, 571, 580
HpyF3I CTNAG 2 cut(s) 54, 279
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 4 cut(s) 96, 134, 364, 595
Hsp92II CATG 2 cut(s) 529, 622
HspAI GCGC 1 cut(s) 103
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 5 cut(s) 59, 240, 294, 335, 516
LmnI GCTCC 1 cut(s) 11
LweI GCATC 2 cut(s) 204, 615
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 603
MalI GATC 5 cut(s) 61, 242, 296, 337, 518
MbiI CCGCTC 2 cut(s) 14, 67
MboI GATC 5 cut(s) 59, 240, 294, 335, 516
MboII GAAGA 2 cut(s) 424, 461
MflI RGATCY 3 cut(s) 240, 294, 335
MhlI GDGCHC 2 cut(s) 492, 525
MluCI AATT 3 cut(s) 380, 393, 643
MmeI TCCRAC 2 cut(s) 333, 363
MseI TTAA 3 cut(s) 378, 531, 646
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 2 cut(s) 153, 333
MspI CCGG 3 cut(s) 9, 202, 290
MspR9I CCNGG 4 cut(s) 80, 203, 209, 290
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 80, 209
MvnI CGCG 2 cut(s) 103, 333
MwoI GCNNNNNNNGC 7 cut(s) 38, 80, 102, 167, 520, 571, 580
NciI CCSGG 2 cut(s) 203, 290
NdeII GATC 5 cut(s) 59, 240, 294, 335, 516
NlaIII CATG 2 cut(s) 529, 622
NlaIV GGNNCC 3 cut(s) 206, 316, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 213
Pfl23II CGTACG 1 cut(s) 228
PkrI GCNGC 4 cut(s) 16, 34, 66, 138
Psp6I CCWGG 2 cut(s) 78, 207
PspFI CCCAGC 1 cut(s) 317
PspGI CCWGG 2 cut(s) 78, 207
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 206, 316, 337
PspPI GGNCC 3 cut(s) 205, 314, 462
PsuI RGATCY 3 cut(s) 240, 294, 335
RsaI GTAC 3 cut(s) 230, 389, 536
RsaNI GTAC 3 cut(s) 229, 388, 535
RseI CAYNNNNRTG 1 cut(s) 623
SacII CCGCGG 1 cut(s) 334
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 378, 531, 646
SatI GCNGC 4 cut(s) 15, 33, 65, 137
Sau3AI GATC 5 cut(s) 59, 240, 294, 335, 516
Sau96I GGNCC 3 cut(s) 205, 314, 462
ScrFI CCNGG 4 cut(s) 80, 203, 209, 290
SduI GDGCHC 2 cut(s) 492, 525
SetI ASST 7 cut(s) 92, 144, 222, 249, 285, 306, 570
SfaNI GCATC 2 cut(s) 204, 615
Sfr303I CCGCGG 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 334
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 3 cut(s) 380, 393, 643
StyD4I CCNGG 4 cut(s) 78, 201, 207, 288
StyI CCWWGG 1 cut(s) 177
TaiI ACGT 1 cut(s) 222
TaqI TCGA 5 cut(s) 69, 123, 285, 361, 631
TasI AATT 3 cut(s) 380, 393, 643
TatI WGTACW 1 cut(s) 534
TauI GCSGC 4 cut(s) 17, 35, 67, 139
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 3 cut(s) 378, 531, 646
Tru9I TTAA 3 cut(s) 378, 531, 646
TscAI CASTG 1 cut(s) 442
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 442
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 380
XmiI GTMKAC 2 cut(s) 183, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.