Rroxscaffold_2G00137140

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005227
Physical Location & Seq
Forward (+)
74843600 .. 74845211
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137140.1

Sequence Viewer

Length: 648 bp
ATGGACACCGGAGCGGCGGGCGTGGGTCTCGCCGCGTCGTCGTCATCGGCGGCGGCGGCGGAGGACCCGTCGTCTCGGGGATCGCCGCTCGACGCCGTCCAGGCGTGGAGCTTCGGCGTGTCGCGCCGATACCAGCACCTGCTCGACAAAACGACGCCGCACGTTCTCCACCGCTGGCTCGGAACCCTCGGCGTGGCCTTGGTCTACGTCCTCCGCGTCTACTTCGTCCAGGGATTCTACATCGTGTCGTACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCGGCCTCCCCACCCGCGGATCCGACGAGTTCCGCCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTACTCTATTACAAAGGCGTTTTGCATCGCTTTCGTGATGACATTCTTCAGTGCGTTTGATGTGCCTGTGTTCTGGCCCATTCTTCTCTTTTACTGGCTAGTGCTCTTCGTTCTCACAATGAGGAGGCAGATCGTACACATGATCAAGTACAAATATGTTCCTTTCTCTATTGGCAAGCAGCGGTATGATGGAAAGAAAGCTTCTGCATCAGAAACCACGACCCTCCTACCTAGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

215

Amino Acids

24.25

Weight (kDa)

9.32

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 40 - 198 3.2e-78 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccBSI CCGCTC 2 cut(s) 14, 88
AccI GTMKAC 3 cut(s) 204, 219, 306
AccII CGCG 4 cut(s) 35, 124, 216, 354
AclWI GGATC 5 cut(s) 88, 269, 310, 351, 364
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 439
AcyI GRCGYC 3 cut(s) 93, 155, 385
AfaI GTAC 4 cut(s) 251, 410, 543, 557
AfiI CCNNNNNNNGG 3 cut(s) 193, 353, 640
AhdI GACNNNNNGTC 1 cut(s) 70
AjnI CCWGG 2 cut(s) 99, 228
AluBI AGCT 2 cut(s) 111, 608
AluI AGCT 2 cut(s) 111, 608
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 2 cut(s) 32, 78
AlwI GGATC 5 cut(s) 88, 269, 310, 351, 364
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 2 cut(s) 75, 392
AoxI GGCC 4 cut(s) 195, 334, 340, 482
ApeKI GCWGC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 401
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 3 cut(s) 64, 335, 483
AsuC2I CCSGG 2 cut(s) 311, 339
AvaI CYCGRG 2 cut(s) 75, 392
AvaII GGWCC 1 cut(s) 64
AvrII CCTAGG 1 cut(s) 638
AxyI CCTNAGG 1 cut(s) 300
BamHI GGATCC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 598
BccI CCATC 1 cut(s) 590
BceAI ACGGC 3 cut(s) 80, 268, 349
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 2 cut(s) 101, 230
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 2 cut(s) 311, 339
BcoDI GTCTC 2 cut(s) 32, 78
BfaI CTAG 2 cut(s) 506, 639
BfuAI ACCTGC 1 cut(s) 147
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 8 cut(s) 15, 33, 51, 54, 57, 86, 158, 587
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 8 cut(s) 16, 34, 52, 55, 58, 87, 159, 588
Bme1390I CCNGG 4 cut(s) 101, 230, 311, 339
Bme18I GGWCC 1 cut(s) 64
BmeRI GACNNNNNGTC 1 cut(s) 70
BmeT110I CYCGRG 2 cut(s) 75, 392
BmgT120I GGNCC 3 cut(s) 64, 335, 483
BmiI GGNNCC 4 cut(s) 66, 184, 337, 358
BmrFI CCNGG 4 cut(s) 101, 230, 311, 339
BmsI GCATC 2 cut(s) 441, 623
BpuMI CCSGG 2 cut(s) 311, 339
BsaHI GRCGYC 3 cut(s) 93, 155, 385
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 6 cut(s) 187, 198, 229, 337, 352, 638
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 353, 640
Bse1I ACTGG 1 cut(s) 506
Bse21I CCTNAGG 1 cut(s) 300
BseBI CCWGG 2 cut(s) 101, 230
BseDI CCNNGG 6 cut(s) 187, 198, 229, 337, 352, 638
BseLI CCNNNNNNNGG 3 cut(s) 193, 353, 640
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 3 cut(s) 260, 288, 544
BseXI GCAGC 1 cut(s) 598
Bsh1236I CGCG 4 cut(s) 35, 124, 216, 354
BshFI GGCC 4 cut(s) 197, 336, 342, 484
BsiHKAI GWGCWC 1 cut(s) 513
BsiHKCI CYCGRG 2 cut(s) 75, 392
BsiSI CCGG 3 cut(s) 9, 311, 339
BsiWI CGTACG 1 cut(s) 249
BslI CCNNNNNNNGG 3 cut(s) 193, 353, 640
BsmAI GTCTC 2 cut(s) 32, 78
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 4 cut(s) 197, 336, 342, 484
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 75, 392
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 6 cut(s) 80, 261, 315, 356, 537, 549
BspANI GGCC 4 cut(s) 197, 336, 342, 484
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 4 cut(s) 35, 124, 216, 354
BspLI GGNNCC 4 cut(s) 66, 184, 337, 358
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 5 cut(s) 88, 269, 310, 351, 364
BspQI GCTCTTC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 2 cut(s) 14, 88
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 6 cut(s) 187, 198, 229, 337, 352, 638
BssMI GATC 6 cut(s) 80, 261, 315, 356, 537, 549
BssNI GRCGYC 3 cut(s) 93, 155, 385
BssT1I CCWWGG 2 cut(s) 198, 638
Bst2UI CCWGG 2 cut(s) 101, 230
Bst6I CTCTTC 1 cut(s) 518
BstACI GRCGYC 3 cut(s) 93, 155, 385
BstC8I GCNNGC 3 cut(s) 19, 176, 584
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 352
BstFNI CGCG 4 cut(s) 35, 124, 216, 354
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 6 cut(s) 83, 264, 318, 359, 540, 552
BstMAI GTCTC 2 cut(s) 32, 78
BstMBI GATC 6 cut(s) 80, 261, 315, 356, 537, 549
BstMWI GCNNNNNNNGC 3 cut(s) 56, 101, 123
BstNI CCWGG 2 cut(s) 101, 230
BstSCI CCNGG 4 cut(s) 99, 228, 309, 337
BstUI CGCG 4 cut(s) 35, 124, 216, 354
BstV1I GCAGC 1 cut(s) 598
BstX2I RGATCY 3 cut(s) 261, 315, 356
BstYI RGATCY 3 cut(s) 261, 315, 356
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 4 cut(s) 197, 336, 342, 484
BtgI CCRYGG 1 cut(s) 352
BtgZI GCGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 463
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 19, 176, 584
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 64, 335, 483
Cfr42I CCGCGG 1 cut(s) 355
CseI GACGC 5 cut(s) 24, 101, 163, 205, 393
Csp6I GTAC 4 cut(s) 250, 409, 542, 556
CviAII CATG 1 cut(s) 547
CviQI GTAC 4 cut(s) 250, 409, 542, 556
DdeI CTNAG 1 cut(s) 300
DpnI GATC 6 cut(s) 82, 263, 317, 358, 539, 551
DpnII GATC 6 cut(s) 80, 261, 315, 356, 537, 549
DraI TTTAAA 1 cut(s) 400
DriI GACNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 518
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 518
EciI GGCGGA 2 cut(s) 74, 359
Eco130I CCWWGG 2 cut(s) 198, 638
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 439
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 2 cut(s) 75, 392
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 99, 228
EcoT14I CCWWGG 2 cut(s) 198, 638
ErhI CCWWGG 2 cut(s) 198, 638
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 1 cut(s) 550
FaiI YATR 3 cut(s) 548, 564, 594
FatI CATG 1 cut(s) 546
FauI CCCGC 2 cut(s) 10, 359
FbaI TGATCA 1 cut(s) 549
FblI GTMKAC 3 cut(s) 204, 219, 306
Fnu4HI GCNGC 8 cut(s) 15, 33, 51, 54, 57, 86, 158, 587
Fsp4HI GCNGC 8 cut(s) 15, 33, 51, 54, 57, 86, 158, 587
FspBI CTAG 2 cut(s) 506, 639
GlaI GCGC 1 cut(s) 125
GluI GCNGC 8 cut(s) 15, 33, 51, 54, 57, 86, 158, 587
HaeIII GGCC 4 cut(s) 197, 336, 342, 484
HapII CCGG 3 cut(s) 9, 311, 339
HgaI GACGC 5 cut(s) 24, 101, 163, 205, 393
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 3 cut(s) 93, 155, 385
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 606
HinfI GANTC 1 cut(s) 234
HpaII CCGG 3 cut(s) 9, 311, 339
Hpy166II GTNNAC 4 cut(s) 205, 220, 307, 544
Hpy188I TCNGA 4 cut(s) 182, 331, 361, 619
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 4 cut(s) 205, 220, 307, 544
Hpy99I CGWCG 8 cut(s) 40, 43, 73, 95, 157, 335, 365, 387
HpyAV CCTTC 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 162, 207
HpyCH4V TGCA 2 cut(s) 432, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 101, 123
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 162, 207
Hsp92I GRCGYC 3 cut(s) 93, 155, 385
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 549
KspI CCGCGG 1 cut(s) 355
Kzo9I GATC 6 cut(s) 80, 261, 315, 356, 537, 549
LguI GCTCTTC 1 cut(s) 518
LmnI GCTCC 2 cut(s) 11, 108
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 2 cut(s) 441, 623
MaeI CTAG 2 cut(s) 506, 639
MaeII ACGT 2 cut(s) 162, 207
MalI GATC 6 cut(s) 82, 263, 317, 358, 539, 551
MbiI CCGCTC 2 cut(s) 14, 88
MboI GATC 6 cut(s) 80, 261, 315, 356, 537, 549
MboII GAAGA 3 cut(s) 445, 482, 505
MflI RGATCY 3 cut(s) 261, 315, 356
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 354, 384
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 3 cut(s) 174, 354, 589
MspI CCGG 3 cut(s) 9, 311, 339
MspR9I CCNGG 4 cut(s) 101, 230, 311, 339
MvaI CCWGG 2 cut(s) 101, 230
MvnI CGCG 4 cut(s) 35, 124, 216, 354
MwoI GCNNNNNNNGC 3 cut(s) 56, 101, 123
NciI CCSGG 2 cut(s) 311, 339
NdeII GATC 6 cut(s) 80, 261, 315, 356, 537, 549
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 4 cut(s) 66, 184, 337, 358
NmeAIII GCCGAG 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 518
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 327
PfeI GAWTC 1 cut(s) 234
Pfl23II CGTACG 1 cut(s) 249
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 8 cut(s) 16, 34, 52, 55, 58, 87, 159, 588
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 99, 228
PspGI CCWGG 2 cut(s) 99, 228
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 4 cut(s) 66, 184, 337, 358
PspPI GGNCC 3 cut(s) 64, 335, 483
PspPPI RGGWCCY 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 3 cut(s) 261, 315, 356
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 4 cut(s) 251, 410, 543, 557
RsaNI GTAC 4 cut(s) 250, 409, 542, 556
SacII CCGCGG 1 cut(s) 355
SalI GTCGAC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 518
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 8 cut(s) 15, 33, 51, 54, 57, 86, 158, 587
Sau3AI GATC 6 cut(s) 80, 261, 315, 356, 537, 549
Sau96I GGNCC 3 cut(s) 64, 335, 483
ScrFI CCNGG 4 cut(s) 101, 230, 311, 339
SduI GDGCHC 1 cut(s) 513
SetI ASST 9 cut(s) 113, 141, 165, 210, 270, 306, 327, 610, 640
SfaNI GCATC 2 cut(s) 441, 623
Sfr303I CCGCGG 1 cut(s) 355
SgrBI CCGCGG 1 cut(s) 355
SinI GGWCC 1 cut(s) 64
Sse9I AATT 1 cut(s) 401
SspMI CTAG 2 cut(s) 506, 639
StyD4I CCNGG 4 cut(s) 99, 228, 309, 337
StyI CCWWGG 2 cut(s) 198, 638
TaiI ACGT 2 cut(s) 165, 210
TaqI TCGA 4 cut(s) 90, 144, 306, 382
TasI AATT 1 cut(s) 401
TatI WGTACW 1 cut(s) 555
TauI GCSGC 7 cut(s) 17, 35, 53, 56, 59, 88, 160
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 463
TseI GCWGC 1 cut(s) 586
TspRI CASTG 1 cut(s) 463
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 401
XmaJI CCTAGG 1 cut(s) 638
XmiI GTMKAC 3 cut(s) 204, 219, 306
XspI CTAG 2 cut(s) 506, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.