Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005227

Physical Location & Seq

Genomic Coordinates Reverse (-)

17619755 .. 17620622

Gene Structure 868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCCACCGGAGCGGCGGGCGTGGGTCTCGCCGCCACCGCCGACCCTTCGTCTCAGGGATCGCCGCTCGACGCCGTCCAGGCATTGACCTTCGGCGTCTCGCGCCGATTTCAGCACTTGCTCGACAAAACGACGCCGCACCTCCTCTACCGCTGGCTCGCCACCCTCGCCGTCGCCTTGGTCTACGTCCTCCGCATCTACCGGGATTTGGTTTCTAGAGATGCACTGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCGTGATGACATTCTTCAGTGCATTTGATGTGCCTGTGTTCTGGCCCATTCTTCTCTTTTACTGGCTTGTGCTCTTCGTTCTCACAATGAGGAGGCAGATCGTGCACATGATCAAGTACAAGTATGTTCCTTTCTCTATTGGCAAGCAGAGGTATGATGGAAAGAAAGCTTCTGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

9.94

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	33 - 67	3e-07	Rer1 family
Rer1	PF03248	77 - 138	1.1e-28	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23310 AT2G23310
fragaria_vesca	FvH4_1g16570 FvH4_1g16570
malus_domestica	MD15G1287700.v1.1
prunus_persica	Prupe.6G230200_v2.0.a1 Prupe.6G230200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0106471 RchiOBHm_Chr2g0106481 RchiOBHm_Chr4g0389971 RchiOBHm_Chr4g0411361
rosa_laevigata	RLG00000017501 RLG00000017505
rosa_multiflora	Rmu_co8363811.1_g000001 Rmu_sc0004015.1_g000015 Rmu_sc0004015.1_g000017
rosa_roxburghii	Rroxscaffold_2G00137140
rosa_rugosa	Rorug02G0135400 Rorug02G0135500 Rorug02G0135500 Rorug02G0135500
rosa_samantha	Rh2AG187000 Rh2AG187100 Rh2BG197700 Rh2BG197900 Rh2CG192000 Rh2DG193100
rosa_wichuraiana	Rw0G020320 Rw2G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	14, 67
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	103
AciI	CCGC	8 cut(s)	14, 17, 33, 39, 65, 137, 151, 193
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	259
AcyI	GRCGYC	3 cut(s)	72, 96, 134
AfaI	GTAC	2 cut(s)	230, 377
AfiI	CCNNNNNNNGG	1 cut(s)	208
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
Alw21I	GWGCWC	2 cut(s)	333, 366
Alw26I	GTCTC	3 cut(s)	32, 57, 103
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	2 cut(s)	3, 302
ApaLI	GTGCAC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	333, 366
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	2 cut(s)	59, 155
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	32, 57, 103
BfaI	CTAG	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	4 cut(s)	15, 33, 65, 137
BlsI	GCNGC	4 cut(s)	16, 34, 66, 138
Bme1390I	CCNGG	2 cut(s)	80, 203
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	2 cut(s)	80, 203
BmsI	GCATC	2 cut(s)	204, 211
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	3 cut(s)	72, 96, 134
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	134, 364
BseSI	GKGCMC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	5, 304
BsiHKAI	GWGCWC	2 cut(s)	333, 366
BsiSI	CCGG	2 cut(s)	9, 202
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	3 cut(s)	32, 57, 103
BsmBI	CGTCTC	2 cut(s)	57, 103
BsnI	GGCC	2 cut(s)	5, 304
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	333, 366
Bsp143I	GATC	3 cut(s)	59, 357, 369
BspACI	CCGC	8 cut(s)	14, 17, 33, 39, 65, 137, 151, 193
BspANI	GGCC	2 cut(s)	5, 304
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	14, 67
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	59, 357, 369
BssNI	GRCGYC	3 cut(s)	72, 96, 134
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	3 cut(s)	72, 96, 134
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	4 cut(s)	19, 155, 159, 404
BstDEI	CTNAG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	62, 360, 372
BstMAI	GTCTC	3 cut(s)	32, 57, 103
BstMBI	GATC	3 cut(s)	59, 357, 369
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 38, 80, 102, 167, 361
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	78, 201
BstSLI	GKGCMC	1 cut(s)	366
BstUI	CGCG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	5, 304
BtsIMutI	CAGTG	2 cut(s)	224, 283
Cac8I	GCNNGC	4 cut(s)	19, 155, 159, 404
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	303
CseI	GACGC	3 cut(s)	80, 85, 142
Csp6I	GTAC	2 cut(s)	229, 376
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	5 cut(s)	5, 157, 304, 325, 428
CviKI_1	RGCY	5 cut(s)	5, 157, 304, 325, 428
CviQI	GTAC	2 cut(s)	229, 376
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	61, 359, 371
DpnII	GATC	3 cut(s)	59, 357, 369
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	338
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	2 cut(s)	57, 103
FaeI	CATG	1 cut(s)	370
FaiI	YATR	3 cut(s)	368, 384, 414
FatI	CATG	1 cut(s)	366
FauI	CCCGC	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	15, 33, 65, 137
Fsp4HI	GCNGC	4 cut(s)	15, 33, 65, 137
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	15, 33, 65, 137
HaeIII	GGCC	2 cut(s)	5, 304
HapII	CCGG	2 cut(s)	9, 202
HgaI	GACGC	3 cut(s)	80, 85, 142
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	3 cut(s)	72, 96, 134
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	426
HpaII	CCGG	2 cut(s)	9, 202
Hpy166II	GTNNAC	2 cut(s)	184, 364
Hpy188III	TCNNGA	2 cut(s)	216, 262
Hpy8I	GTNNAC	2 cut(s)	184, 364
Hpy99I	CGWCG	3 cut(s)	74, 136, 176
HpyAV	CCTTC	2 cut(s)	57, 100
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	224, 252, 281, 364, 434
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 38, 80, 102, 167, 361
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	3 cut(s)	72, 96, 134
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	59, 357, 369
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	9 cut(s)	22, 41, 65, 92, 139, 215, 286, 306, 307
LweI	GCATC	2 cut(s)	204, 211
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	186
MalI	GATC	3 cut(s)	61, 359, 371
MbiI	CCGCTC	2 cut(s)	14, 67
MboI	GATC	3 cut(s)	59, 357, 369
MboII	GAAGA	3 cut(s)	265, 302, 325
MhlI	GDGCHC	2 cut(s)	333, 366
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	152, 155, 176, 200, 342, 345, 402
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	2 cut(s)	9, 202
MspR9I	CCNGG	2 cut(s)	80, 203
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	6 cut(s)	11, 38, 80, 102, 167, 361
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	3 cut(s)	59, 357, 369
NlaIII	CATG	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	338
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	16, 34, 66, 138
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	2 cut(s)	230, 377
RsaNI	GTAC	2 cut(s)	229, 376
SapI	GCTCTTC	1 cut(s)	338
SatI	GCNGC	4 cut(s)	15, 33, 65, 137
Sau3AI	GATC	3 cut(s)	59, 357, 369
Sau96I	GGNCC	1 cut(s)	303
ScrFI	CCNGG	2 cut(s)	80, 203
SduI	GDGCHC	2 cut(s)	333, 366
SetI	ASST	5 cut(s)	92, 144, 189, 413, 430
SfaNI	GCATC	2 cut(s)	204, 211
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	8 cut(s)	14, 17, 33, 39, 65, 137, 151, 193
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	78, 201
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	69, 123
TasI	AATT	1 cut(s)	234
TatI	WGTACW	2 cut(s)	228, 375
TauI	GCSGC	4 cut(s)	17, 35, 67, 139
TscAI	CASTG	2 cut(s)	231, 283
TspRI	CASTG	2 cut(s)	231, 283
Tth111I	GACNNNGTC	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.