Rh2DG193100

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005227
Physical Location & Seq
Reverse (-)
17606724 .. 17619113
12390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG193100.1

Sequence Viewer

Length: 615 bp
ATGGACACCGGAGCGGCGGGCGTGGGTCTCGCCGCGTCGTCGTCGTCGTCGGCGGAGGACCCGTCGTCTCGGGGATCGCCGCTGGACGCCGTCCAGGCGTGGAGCTTCGGCGTGTCGCGCCGATACCAGCACCTGCTCGACAAAACGACGCCGCACGTCCTCCACCGCTGGCTCGCAACCCTCGGCGTGGCCTTGGTCTACGTCCTCCGCGTCTACTTCGTCCAGGGATTCTACGTCGTGTCGTACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCGGCCTCCCCACCCGCGGATCCGACGAGTTCCGCCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCGTGATGACATTCTTCAGTGCATTTGATGTGCCTGTGTTCTGGCCCATTCTTCTCTTTTACTGGCTTGTGCTCTTTGTTCTCACAATGAGGAGGCAGATCGTGCACATGATTAAGTACAAATATGTTCCTTTCTCTATTGGCAAGCAGAGGTATGATGGAAAGAAAGCTTCTGCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

204

Amino Acids

23.12

Weight (kDa)

9.46

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 38 - 196 4.9e-78 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 141
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 3 cut(s) 198, 213, 300
AccII CGCG 4 cut(s) 35, 118, 210, 348
AclWI GGATC 5 cut(s) 82, 263, 304, 345, 358
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 433
AcyI GRCGYC 3 cut(s) 87, 149, 379
AfaI GTAC 3 cut(s) 245, 404, 551
AfiI CCNNNNNNNGG 2 cut(s) 187, 347
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 2 cut(s) 93, 222
AluBI AGCT 2 cut(s) 105, 602
AluI AGCT 2 cut(s) 105, 602
Alw21I GWGCWC 2 cut(s) 507, 540
Alw26I GTCTC 2 cut(s) 32, 72
Alw44I GTGCAC 1 cut(s) 536
AlwI GGATC 5 cut(s) 82, 263, 304, 345, 358
AlwNI CAGNNNCTG 1 cut(s) 133
Ama87I CYCGRG 2 cut(s) 69, 386
AoxI GGCC 4 cut(s) 189, 328, 334, 476
ApaLI GTGCAC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 395
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 3 cut(s) 58, 329, 477
AsuC2I CCSGG 2 cut(s) 305, 333
AvaI CYCGRG 2 cut(s) 69, 386
AvaII GGWCC 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 540
BamHI GGATCC 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 507, 540
BccI CCATC 1 cut(s) 584
BceAI ACGGC 3 cut(s) 74, 262, 343
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 2 cut(s) 95, 224
BcnI CCSGG 2 cut(s) 305, 333
BcoDI GTCTC 2 cut(s) 32, 72
BfuAI ACCTGC 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 4 cut(s) 15, 33, 80, 152
BlsI GCNGC 4 cut(s) 16, 34, 81, 153
Bme1390I CCNGG 4 cut(s) 95, 224, 305, 333
Bme18I GGWCC 1 cut(s) 58
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 2 cut(s) 69, 386
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 3 cut(s) 58, 329, 477
BmiI GGNNCC 3 cut(s) 60, 331, 352
BmrFI CCNGG 4 cut(s) 95, 224, 305, 333
BpuMI CCSGG 2 cut(s) 305, 333
BsaHI GRCGYC 3 cut(s) 87, 149, 379
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 5 cut(s) 181, 192, 223, 331, 346
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 347
Bse1I ACTGG 1 cut(s) 500
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 95, 224
BseDI CCNNGG 5 cut(s) 181, 192, 223, 331, 346
BseLI CCNNNNNNNGG 2 cut(s) 187, 347
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 3 cut(s) 254, 282, 538
BseSI GKGCMC 1 cut(s) 540
Bsh1236I CGCG 4 cut(s) 35, 118, 210, 348
BshFI GGCC 4 cut(s) 191, 330, 336, 478
BsiHKAI GWGCWC 2 cut(s) 507, 540
BsiHKCI CYCGRG 2 cut(s) 69, 386
BsiSI CCGG 3 cut(s) 9, 305, 333
BsiWI CGTACG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 187, 347
BsmAI GTCTC 2 cut(s) 32, 72
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 4 cut(s) 191, 330, 336, 478
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 69, 386
Bsp1286I GDGCHC 2 cut(s) 507, 540
Bsp143I GATC 5 cut(s) 74, 255, 309, 350, 531
BspANI GGCC 4 cut(s) 191, 330, 336, 478
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 4 cut(s) 35, 118, 210, 348
BspLI GGNNCC 3 cut(s) 60, 331, 352
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 5 cut(s) 82, 263, 304, 345, 358
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 5 cut(s) 181, 192, 223, 331, 346
BssMI GATC 5 cut(s) 74, 255, 309, 350, 531
BssNI GRCGYC 3 cut(s) 87, 149, 379
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 95, 224
BstACI GRCGYC 3 cut(s) 87, 149, 379
BstAPI GCANNNNNTGC 1 cut(s) 535
BstC8I GCNNGC 4 cut(s) 19, 170, 174, 578
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 346
BstFNI CGCG 4 cut(s) 35, 118, 210, 348
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 5 cut(s) 77, 258, 312, 353, 534
BstMAI GTCTC 2 cut(s) 32, 72
BstMBI GATC 5 cut(s) 74, 255, 309, 350, 531
BstMWI GCNNNNNNNGC 3 cut(s) 95, 117, 535
BstNI CCWGG 2 cut(s) 95, 224
BstSCI CCNGG 4 cut(s) 93, 222, 303, 331
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 4 cut(s) 35, 118, 210, 348
BstX2I RGATCY 3 cut(s) 255, 309, 350
BstYI RGATCY 3 cut(s) 255, 309, 350
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 4 cut(s) 191, 330, 336, 478
BtgI CCRYGG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 457
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 4 cut(s) 19, 170, 174, 578
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 58, 329, 477
Cfr42I CCGCGG 1 cut(s) 349
CseI GACGC 5 cut(s) 24, 95, 157, 199, 387
Csp6I GTAC 3 cut(s) 244, 403, 550
CviAII CATG 1 cut(s) 541
CviQI GTAC 3 cut(s) 244, 403, 550
DdeI CTNAG 1 cut(s) 294
DpnI GATC 5 cut(s) 76, 257, 311, 352, 533
DpnII GATC 5 cut(s) 74, 255, 309, 350, 531
DraI TTTAAA 1 cut(s) 394
DriI GACNNNNNGTC 1 cut(s) 64
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 2 cut(s) 68, 353
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 433
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 2 cut(s) 69, 386
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 93, 222
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 1 cut(s) 544
FaiI YATR 3 cut(s) 542, 558, 588
FatI CATG 1 cut(s) 540
FauI CCCGC 2 cut(s) 10, 353
FblI GTMKAC 3 cut(s) 198, 213, 300
Fnu4HI GCNGC 4 cut(s) 15, 33, 80, 152
Fsp4HI GCNGC 4 cut(s) 15, 33, 80, 152
GlaI GCGC 1 cut(s) 119
GluI GCNGC 4 cut(s) 15, 33, 80, 152
HaeIII GGCC 4 cut(s) 191, 330, 336, 478
HapII CCGG 3 cut(s) 9, 305, 333
HgaI GACGC 5 cut(s) 24, 95, 157, 199, 387
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 3 cut(s) 87, 149, 379
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 600
HinfI GANTC 1 cut(s) 228
HpaII CCGG 3 cut(s) 9, 305, 333
Hpy166II GTNNAC 4 cut(s) 199, 214, 301, 538
Hpy188I TCNGA 2 cut(s) 325, 355
Hpy188III TCNNGA 1 cut(s) 436
Hpy8I GTNNAC 4 cut(s) 199, 214, 301, 538
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 3 cut(s) 156, 201, 234
HpyCH4V TGCA 4 cut(s) 426, 455, 538, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 117, 535
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 156, 201, 234
Hsp92I GRCGYC 3 cut(s) 87, 149, 379
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 1 cut(s) 118
KspI CCGCGG 1 cut(s) 349
Kzo9I GATC 5 cut(s) 74, 255, 309, 350, 531
LmnI GCTCC 2 cut(s) 11, 102
MaeII ACGT 3 cut(s) 156, 201, 234
MalI GATC 5 cut(s) 76, 257, 311, 352, 533
MbiI CCGCTC 1 cut(s) 14
MboI GATC 5 cut(s) 74, 255, 309, 350, 531
MboII GAAGA 2 cut(s) 439, 476
MflI RGATCY 3 cut(s) 255, 309, 350
MhlI GDGCHC 2 cut(s) 507, 540
MluCI AATT 2 cut(s) 395, 408
MmeI TCCRAC 2 cut(s) 348, 378
MseI TTAA 2 cut(s) 393, 546
MspA1I CMGCKG 3 cut(s) 82, 168, 348
MspI CCGG 3 cut(s) 9, 305, 333
MspR9I CCNGG 4 cut(s) 95, 224, 305, 333
MvaI CCWGG 2 cut(s) 95, 224
MvnI CGCG 4 cut(s) 35, 118, 210, 348
MwoI GCNNNNNNNGC 3 cut(s) 95, 117, 535
NciI CCSGG 2 cut(s) 305, 333
NdeII GATC 5 cut(s) 74, 255, 309, 350, 531
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 3 cut(s) 60, 331, 352
NmeAIII GCCGAG 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 3 cut(s) 44, 207, 321
PfeI GAWTC 1 cut(s) 228
Pfl23II CGTACG 1 cut(s) 243
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 4 cut(s) 16, 34, 81, 153
PpuMI RGGWCCY 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 93, 222
PspGI CCWGG 2 cut(s) 93, 222
PspLI CGTACG 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 60, 331, 352
PspPI GGNCC 3 cut(s) 58, 329, 477
PspPPI RGGWCCY 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 3 cut(s) 255, 309, 350
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 3 cut(s) 245, 404, 551
RsaNI GTAC 3 cut(s) 244, 403, 550
SacII CCGCGG 1 cut(s) 349
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 393, 546
SatI GCNGC 4 cut(s) 15, 33, 80, 152
Sau3AI GATC 5 cut(s) 74, 255, 309, 350, 531
Sau96I GGNCC 3 cut(s) 58, 329, 477
ScrFI CCNGG 4 cut(s) 95, 224, 305, 333
SduI GDGCHC 2 cut(s) 507, 540
Sfr303I CCGCGG 1 cut(s) 349
SgrBI CCGCGG 1 cut(s) 349
SinI GGWCC 1 cut(s) 58
Sse9I AATT 2 cut(s) 395, 408
StyD4I CCNGG 4 cut(s) 93, 222, 303, 331
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 3 cut(s) 159, 204, 237
TaqI TCGA 3 cut(s) 138, 300, 376
TasI AATT 2 cut(s) 395, 408
TatI WGTACW 1 cut(s) 549
TauI GCSGC 4 cut(s) 17, 35, 82, 154
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 2 cut(s) 393, 546
Tru9I TTAA 2 cut(s) 393, 546
TscAI CASTG 1 cut(s) 457
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 89
VneI GTGCAC 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 395
XmiI GTMKAC 3 cut(s) 198, 213, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.