Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004015.1

Orthogroup ID

OG0005227

Physical Location & Seq

Genomic Coordinates Reverse (-)

52910 .. 53629

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004015.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggacaccggagcggcgggcgtgggtctcgccgcgtcgtcgtcgtcggcggaggacccgtcgtctcggggatcgccgctcgacgccgtccaggcgtggagcttcggcgtgtcgcgccgataccagcacctgctcgacaaaacgacgccgcacgtcctccaccgctggctcgcaaccctcggcgtggccttggtctacgtcctccgcgtctacttcgtccagggattctacgtcgtgtcgtacggcttggggatctacctcctcaacttgctcatcggctttctctctcctcaggtcgacccggagatccacgacctttccgacggccccggcctccccacccgcggatccgacgagttccgccccttcgttcgacgcctccccgagtttaaattctggtactcaattacaaaggcgttttgcattgctttcgtgatgacattcttcagtgcatttgatgtgcctgtgttctggcccattcttctatgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

163

Amino Acids

18.16

Weight (kDa)

6.39

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23310 AT2G23310
fragaria_vesca	FvH4_1g16570 FvH4_1g16570
malus_domestica	MD15G1287700.v1.1
prunus_persica	Prupe.6G230200_v2.0.a1 Prupe.6G230200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0106471 RchiOBHm_Chr2g0106481 RchiOBHm_Chr4g0389971 RchiOBHm_Chr4g0411361
rosa_laevigata	RLG00000017501 RLG00000017505
rosa_multiflora	Rmu_co8363811.1_g000001 Rmu_sc0004015.1_g000015 Rmu_sc0004015.1_g000017
rosa_roxburghii	Rroxscaffold_2G00137140
rosa_rugosa	Rorug02G0135400 Rorug02G0135500 Rorug02G0135500 Rorug02G0135500
rosa_samantha	Rh2AG187000 Rh2AG187100 Rh2BG197700 Rh2BG197900 Rh2CG192000 Rh2DG193100
rosa_wichuraiana	Rw0G020320 Rw2G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	138
AccBSI	CCGCTC	2 cut(s)	14, 79
AccI	GTMKAC	3 cut(s)	195, 210, 297
AccII	CGCG	4 cut(s)	35, 115, 207, 345
AclWI	GGATC	5 cut(s)	79, 260, 301, 342, 355
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	430
AcyI	GRCGYC	3 cut(s)	84, 146, 376
AfaI	GTAC	2 cut(s)	242, 401
AfiI	CCNNNNNNNGG	2 cut(s)	184, 344
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	90, 219
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	32, 69
AlwI	GGATC	5 cut(s)	79, 260, 301, 342, 355
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	2 cut(s)	66, 383
AoxI	GGCC	4 cut(s)	186, 325, 331, 473
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	3 cut(s)	55, 326, 474
AsuC2I	CCSGG	2 cut(s)	302, 330
AvaI	CYCGRG	2 cut(s)	66, 383
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	347
BceAI	ACGGC	3 cut(s)	71, 259, 340
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BciT130I	CCWGG	2 cut(s)	92, 221
BcnI	CCSGG	2 cut(s)	302, 330
BcoDI	GTCTC	2 cut(s)	32, 69
BfuAI	ACCTGC	1 cut(s)	138
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	15, 33, 77, 149
BlsI	GCNGC	4 cut(s)	16, 34, 78, 150
Bme1390I	CCNGG	4 cut(s)	92, 221, 302, 330
Bme18I	GGWCC	1 cut(s)	55
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	2 cut(s)	66, 383
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	55, 326, 474
BmiI	GGNNCC	3 cut(s)	57, 328, 349
BmrFI	CCNGG	4 cut(s)	92, 221, 302, 330
BpuMI	CCSGG	2 cut(s)	302, 330
BsaHI	GRCGYC	3 cut(s)	84, 146, 376
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	5 cut(s)	178, 189, 220, 328, 343
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 344
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	92, 221
BseDI	CCNNGG	5 cut(s)	178, 189, 220, 328, 343
BseLI	CCNNNNNNNGG	2 cut(s)	184, 344
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	251, 279
Bsh1236I	CGCG	4 cut(s)	35, 115, 207, 345
BshFI	GGCC	4 cut(s)	188, 327, 333, 475
BsiHKCI	CYCGRG	2 cut(s)	66, 383
BsiSI	CCGG	3 cut(s)	9, 302, 330
BsiWI	CGTACG	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	184, 344
BsmAI	GTCTC	2 cut(s)	32, 69
BsmBI	CGTCTC	1 cut(s)	69
BsnI	GGCC	4 cut(s)	188, 327, 333, 475
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	2 cut(s)	66, 383
Bsp143I	GATC	4 cut(s)	71, 252, 306, 347
BspANI	GGCC	4 cut(s)	188, 327, 333, 475
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	4 cut(s)	35, 115, 207, 345
BspLI	GGNNCC	3 cut(s)	57, 328, 349
BspMI	ACCTGC	1 cut(s)	138
BspPI	GGATC	5 cut(s)	79, 260, 301, 342, 355
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	14, 79
BsrDI	GCAATG	1 cut(s)	423
BssECI	CCNNGG	5 cut(s)	178, 189, 220, 328, 343
BssMI	GATC	4 cut(s)	71, 252, 306, 347
BssNI	GRCGYC	3 cut(s)	84, 146, 376
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	92, 221
BstACI	GRCGYC	3 cut(s)	84, 146, 376
BstC8I	GCNNGC	3 cut(s)	19, 167, 171
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	343
BstFNI	CGCG	4 cut(s)	35, 115, 207, 345
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	4 cut(s)	74, 255, 309, 350
BstMAI	GTCTC	2 cut(s)	32, 69
BstMBI	GATC	4 cut(s)	71, 252, 306, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 114
BstNI	CCWGG	2 cut(s)	92, 221
BstSCI	CCNGG	4 cut(s)	90, 219, 300, 328
BstUI	CGCG	4 cut(s)	35, 115, 207, 345
BstX2I	RGATCY	3 cut(s)	252, 306, 347
BstYI	RGATCY	3 cut(s)	252, 306, 347
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	188, 327, 333, 475
BtgI	CCRYGG	1 cut(s)	343
BtrI	CACGTC	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	454
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	19, 167, 171
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	3 cut(s)	55, 326, 474
Cfr42I	CCGCGG	1 cut(s)	346
CseI	GACGC	5 cut(s)	24, 92, 154, 196, 384
Csp6I	GTAC	2 cut(s)	241, 400
CviJI	RGCY	8 cut(s)	102, 169, 188, 246, 279, 327, 333, 475
CviKI_1	RGCY	8 cut(s)	102, 169, 188, 246, 279, 327, 333, 475
CviQI	GTAC	2 cut(s)	241, 400
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	73, 254, 308, 349
DpnII	GATC	4 cut(s)	71, 252, 306, 347
DraI	TTTAAA	1 cut(s)	391
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EciI	GGCGGA	2 cut(s)	65, 350
Eco130I	CCWWGG	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	430
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	2 cut(s)	66, 383
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	90, 219
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	69
FaiI	YATR	1 cut(s)	487
FauI	CCCGC	2 cut(s)	10, 350
FblI	GTMKAC	3 cut(s)	195, 210, 297
Fnu4HI	GCNGC	4 cut(s)	15, 33, 77, 149
Fsp4HI	GCNGC	4 cut(s)	15, 33, 77, 149
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	15, 33, 77, 149
HaeIII	GGCC	4 cut(s)	188, 327, 333, 475
HapII	CCGG	3 cut(s)	9, 302, 330
HgaI	GACGC	5 cut(s)	24, 92, 154, 196, 384
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	3 cut(s)	84, 146, 376
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	3 cut(s)	9, 302, 330
Hpy166II	GTNNAC	3 cut(s)	196, 211, 298
Hpy188I	TCNGA	2 cut(s)	322, 352
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	3 cut(s)	196, 211, 298
HpyAV	CCTTC	1 cut(s)	376
HpyCH4IV	ACGT	3 cut(s)	153, 198, 231
HpyCH4V	TGCA	2 cut(s)	423, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 114
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	3 cut(s)	153, 198, 231
Hsp92I	GRCGYC	3 cut(s)	84, 146, 376
HspAI	GCGC	1 cut(s)	115
KspI	CCGCGG	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	71, 252, 306, 347
LmnI	GCTCC	2 cut(s)	11, 99
MaeII	ACGT	3 cut(s)	153, 198, 231
MalI	GATC	4 cut(s)	73, 254, 308, 349
MbiI	CCGCTC	2 cut(s)	14, 79
MboI	GATC	4 cut(s)	71, 252, 306, 347
MboII	GAAGA	2 cut(s)	436, 473
MflI	RGATCY	3 cut(s)	252, 306, 347
MluCI	AATT	2 cut(s)	392, 405
MmeI	TCCRAC	2 cut(s)	345, 375
MnlI	CCTC	9 cut(s)	46, 167, 188, 212, 269, 272, 300, 344, 389
MseI	TTAA	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	165, 345
MspI	CCGG	3 cut(s)	9, 302, 330
MspR9I	CCNGG	4 cut(s)	92, 221, 302, 330
MvaI	CCWGG	2 cut(s)	92, 221
MvnI	CGCG	4 cut(s)	35, 115, 207, 345
MwoI	GCNNNNNNNGC	2 cut(s)	92, 114
NciI	CCSGG	2 cut(s)	302, 330
NdeII	GATC	4 cut(s)	71, 252, 306, 347
NlaIV	GGNNCC	3 cut(s)	57, 328, 349
NmeAIII	GCCGAG	1 cut(s)	159
PaqCI	CACCTGC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 318
PfeI	GAWTC	1 cut(s)	225
Pfl23II	CGTACG	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	16, 34, 78, 150
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	90, 219
PspGI	CCWGG	2 cut(s)	90, 219
PspLI	CGTACG	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	57, 328, 349
PspPI	GGNCC	3 cut(s)	55, 326, 474
PspPPI	RGGWCCY	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	252, 306, 347
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	242, 401
RsaNI	GTAC	2 cut(s)	241, 400
SacII	CCGCGG	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	4 cut(s)	15, 33, 77, 149
Sau3AI	GATC	4 cut(s)	71, 252, 306, 347
Sau96I	GGNCC	3 cut(s)	55, 326, 474
ScrFI	CCNGG	4 cut(s)	92, 221, 302, 330
SetI	ASST	8 cut(s)	104, 132, 156, 201, 234, 261, 297, 318
Sfr303I	CCGCGG	1 cut(s)	346
SgrBI	CCGCGG	1 cut(s)	346
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	392, 405
StyD4I	CCNGG	4 cut(s)	90, 219, 300, 328
StyI	CCWWGG	1 cut(s)	189
TaiI	ACGT	3 cut(s)	156, 201, 234
TaqI	TCGA	4 cut(s)	81, 135, 297, 373
TasI	AATT	2 cut(s)	392, 405
TauI	GCSGC	4 cut(s)	17, 35, 79, 151
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	454
TspRI	CASTG	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	392
XmiI	GTMKAC	3 cut(s)	195, 210, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.