Rh2BG197900

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005227
Physical Location & Seq
Reverse (-)
18063108 .. 18064660
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG197900.1

Sequence Viewer

Length: 654 bp
ATGGACACCGGAGCGGCGGGCGTGGGTCTCGCCGCGTCGTCGTCGTCGTCGTCGTCGGCGTCGGCGGAGGACCCGTCGTCTGGGGGATCGCCGCTCGACGCCGTCCAGGCGTGGAGCTTCGGCGTGTCGCGCCGATACCAGCACCTGCTCGACAAAACGACGCCGCACGTCCTCCACCGCTGGCTCGCAACCCTCGGCGTGGCCTTGGTCTACGTCCTCCGCGTCTACTTCGTCCAGGGATTCTACGTCGTGTCGTACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCGGCCTCCCGACCCGCGGATCCGACGAGTTCCGGCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCGTGATGACATTCTTCAGTGCATTTGATGTGCCTGTGTTCTGGCCCATTCTTCTCTTCTACTGGCTAGTGCTCTTCGTTCTCACAATGAGGAGGCAGATCGTACACATGATCAAGTACAAATATGTTCCTTTCTCTATTGGCAAGCAGCGGTATGATGGAAAGAAAGCTTCTGCATCAGAAACCACGACCCTCCTACCTAGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

217

Amino Acids

24.35

Weight (kDa)

9.16

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 42 - 200 6e-78 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 153
AccBSI CCGCTC 2 cut(s) 14, 94
AccI GTMKAC 3 cut(s) 210, 225, 312
AccII CGCG 4 cut(s) 35, 130, 222, 360
AclWI GGATC 5 cut(s) 94, 275, 316, 357, 370
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 445
AcyI GRCGYC 4 cut(s) 59, 99, 161, 391
AfaI GTAC 4 cut(s) 257, 416, 549, 563
AfiI CCNNNNNNNGG 4 cut(s) 80, 199, 359, 646
AhdI GACNNNNNGTC 1 cut(s) 76
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 2 cut(s) 105, 234
AluBI AGCT 2 cut(s) 117, 614
AluI AGCT 2 cut(s) 117, 614
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 5 cut(s) 94, 275, 316, 357, 370
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 5 cut(s) 201, 340, 346, 377, 488
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 1 cut(s) 407
AspA2I CCTAGG 1 cut(s) 644
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 4 cut(s) 70, 341, 378, 489
AsuC2I CCSGG 2 cut(s) 317, 345
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 306
BamHI GGATCC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 604
BccI CCATC 1 cut(s) 596
BceAI ACGGC 3 cut(s) 86, 274, 355
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 2 cut(s) 107, 236
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 2 cut(s) 317, 345
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 512, 645
BfuAI ACCTGC 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 5 cut(s) 15, 33, 92, 164, 593
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 5 cut(s) 16, 34, 93, 165, 594
Bme1390I CCNGG 4 cut(s) 107, 236, 317, 345
Bme18I GGWCC 1 cut(s) 70
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 4 cut(s) 70, 341, 378, 489
BmiI GGNNCC 3 cut(s) 72, 343, 364
BmrFI CCNGG 4 cut(s) 107, 236, 317, 345
BmsI GCATC 1 cut(s) 629
BpuMI CCSGG 2 cut(s) 317, 345
BsaHI GRCGYC 4 cut(s) 59, 99, 161, 391
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 6 cut(s) 193, 204, 235, 343, 358, 644
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 199, 359, 646
Bse1I ACTGG 1 cut(s) 512
Bse21I CCTNAGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 2 cut(s) 107, 236
BseDI CCNNGG 6 cut(s) 193, 204, 235, 343, 358, 644
BseLI CCNNNNNNNGG 4 cut(s) 80, 199, 359, 646
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 3 cut(s) 266, 294, 550
BseXI GCAGC 1 cut(s) 604
Bsh1236I CGCG 4 cut(s) 35, 130, 222, 360
BshFI GGCC 5 cut(s) 203, 342, 348, 379, 490
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 4 cut(s) 9, 317, 345, 376
BsiWI CGTACG 1 cut(s) 255
BslI CCNNNNNNNGG 4 cut(s) 80, 199, 359, 646
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 5 cut(s) 203, 342, 348, 379, 490
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 6 cut(s) 86, 267, 321, 362, 543, 555
BspANI GGCC 5 cut(s) 203, 342, 348, 379, 490
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 4 cut(s) 35, 130, 222, 360
BspLI GGNNCC 3 cut(s) 72, 343, 364
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 5 cut(s) 94, 275, 316, 357, 370
BspQI GCTCTTC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 2 cut(s) 14, 94
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 6 cut(s) 193, 204, 235, 343, 358, 644
BssMI GATC 6 cut(s) 86, 267, 321, 362, 543, 555
BssNI GRCGYC 4 cut(s) 59, 99, 161, 391
BssT1I CCWWGG 2 cut(s) 204, 644
Bst2UI CCWGG 2 cut(s) 107, 236
Bst6I CTCTTC 2 cut(s) 506, 524
BstACI GRCGYC 4 cut(s) 59, 99, 161, 391
BstC8I GCNNGC 4 cut(s) 19, 182, 186, 590
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 358
BstFNI CGCG 4 cut(s) 35, 130, 222, 360
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 6 cut(s) 89, 270, 324, 365, 546, 558
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 6 cut(s) 86, 267, 321, 362, 543, 555
BstMWI GCNNNNNNNGC 2 cut(s) 107, 129
BstNI CCWGG 2 cut(s) 107, 236
BstSCI CCNGG 4 cut(s) 105, 234, 315, 343
BstUI CGCG 4 cut(s) 35, 130, 222, 360
BstV1I GCAGC 1 cut(s) 604
BstX2I RGATCY 3 cut(s) 267, 321, 362
BstYI RGATCY 3 cut(s) 267, 321, 362
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 5 cut(s) 203, 342, 348, 379, 490
BtgI CCRYGG 1 cut(s) 358
BtrI CACGTC 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 469
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 4 cut(s) 19, 182, 186, 590
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 4 cut(s) 70, 341, 378, 489
Cfr42I CCGCGG 1 cut(s) 361
CseI GACGC 6 cut(s) 24, 48, 107, 169, 211, 399
Csp6I GTAC 4 cut(s) 256, 415, 548, 562
CviAII CATG 1 cut(s) 553
CviQI GTAC 4 cut(s) 256, 415, 548, 562
DdeI CTNAG 1 cut(s) 306
DpnI GATC 6 cut(s) 88, 269, 323, 364, 545, 557
DpnII GATC 6 cut(s) 86, 267, 321, 362, 543, 555
DraI TTTAAA 1 cut(s) 406
DriI GACNNNNNGTC 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 506, 524
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 2 cut(s) 506, 524
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 204, 644
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 445
Eco81I CCTNAGG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 105, 234
EcoT14I CCWWGG 2 cut(s) 204, 644
ErhI CCWWGG 2 cut(s) 204, 644
FaeI CATG 1 cut(s) 556
FaiI YATR 3 cut(s) 554, 570, 600
FatI CATG 1 cut(s) 552
FauI CCCGC 2 cut(s) 10, 365
FbaI TGATCA 1 cut(s) 555
FblI GTMKAC 3 cut(s) 210, 225, 312
Fnu4HI GCNGC 5 cut(s) 15, 33, 92, 164, 593
Fsp4HI GCNGC 5 cut(s) 15, 33, 92, 164, 593
FspBI CTAG 2 cut(s) 512, 645
GlaI GCGC 1 cut(s) 131
GluI GCNGC 5 cut(s) 15, 33, 92, 164, 593
HaeIII GGCC 5 cut(s) 203, 342, 348, 379, 490
HapII CCGG 4 cut(s) 9, 317, 345, 376
HgaI GACGC 6 cut(s) 24, 48, 107, 169, 211, 399
HhaI GCGC 1 cut(s) 132
Hin1I GRCGYC 4 cut(s) 59, 99, 161, 391
Hin1II CATG 1 cut(s) 556
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 1 cut(s) 240
HpaII CCGG 4 cut(s) 9, 317, 345, 376
Hpy166II GTNNAC 4 cut(s) 211, 226, 313, 550
Hpy188I TCNGA 3 cut(s) 337, 367, 625
Hpy188III TCNNGA 2 cut(s) 352, 448
Hpy8I GTNNAC 4 cut(s) 211, 226, 313, 550
HpyAV CCTTC 1 cut(s) 391
HpyCH4IV ACGT 3 cut(s) 168, 213, 246
HpyCH4V TGCA 3 cut(s) 438, 467, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 129
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 3 cut(s) 168, 213, 246
Hsp92I GRCGYC 4 cut(s) 59, 99, 161, 391
Hsp92II CATG 1 cut(s) 556
HspAI GCGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 555
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 6 cut(s) 86, 267, 321, 362, 543, 555
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 2 cut(s) 11, 114
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 1 cut(s) 629
MaeI CTAG 2 cut(s) 512, 645
MaeII ACGT 3 cut(s) 168, 213, 246
MalI GATC 6 cut(s) 88, 269, 323, 364, 545, 557
MbiI CCGCTC 2 cut(s) 14, 94
MboI GATC 6 cut(s) 86, 267, 321, 362, 543, 555
MboII GAAGA 4 cut(s) 451, 488, 493, 511
MflI RGATCY 3 cut(s) 267, 321, 362
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 2 cut(s) 407, 420
MmeI TCCRAC 2 cut(s) 360, 390
MseI TTAA 1 cut(s) 405
MspA1I CMGCKG 3 cut(s) 180, 360, 595
MspI CCGG 4 cut(s) 9, 317, 345, 376
MspR9I CCNGG 4 cut(s) 107, 236, 317, 345
MvaI CCWGG 2 cut(s) 107, 236
MvnI CGCG 4 cut(s) 35, 130, 222, 360
MwoI GCNNNNNNNGC 2 cut(s) 107, 129
NciI CCSGG 2 cut(s) 317, 345
NdeII GATC 6 cut(s) 86, 267, 321, 362, 543, 555
NlaIII CATG 1 cut(s) 556
NlaIV GGNNCC 3 cut(s) 72, 343, 364
NmeAIII GCCGAG 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 524
PcsI WCGNNNNNNNCGW 6 cut(s) 44, 47, 50, 56, 219, 333
PfeI GAWTC 1 cut(s) 240
Pfl23II CGTACG 1 cut(s) 255
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 5 cut(s) 16, 34, 93, 165, 594
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 105, 234
PspGI CCWGG 2 cut(s) 105, 234
PspLI CGTACG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 72, 343, 364
PspPI GGNCC 4 cut(s) 70, 341, 378, 489
PspPPI RGGWCCY 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 3 cut(s) 267, 321, 362
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 4 cut(s) 257, 416, 549, 563
RsaNI GTAC 4 cut(s) 256, 415, 548, 562
SacII CCGCGG 1 cut(s) 361
SalI GTCGAC 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 5 cut(s) 15, 33, 92, 164, 593
Sau3AI GATC 6 cut(s) 86, 267, 321, 362, 543, 555
Sau96I GGNCC 4 cut(s) 70, 341, 378, 489
ScrFI CCNGG 4 cut(s) 107, 236, 317, 345
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 1 cut(s) 629
Sfr303I CCGCGG 1 cut(s) 361
SgrBI CCGCGG 1 cut(s) 361
SinI GGWCC 1 cut(s) 70
Sse9I AATT 2 cut(s) 407, 420
SspMI CTAG 2 cut(s) 512, 645
StyD4I CCNGG 4 cut(s) 105, 234, 315, 343
StyI CCWWGG 2 cut(s) 204, 644
TaiI ACGT 3 cut(s) 171, 216, 249
TaqI TCGA 4 cut(s) 96, 150, 312, 388
TasI AATT 2 cut(s) 407, 420
TatI WGTACW 1 cut(s) 561
TauI GCSGC 4 cut(s) 17, 35, 94, 166
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 469
TseI GCWGC 1 cut(s) 592
TspRI CASTG 1 cut(s) 469
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 407
XmaJI CCTAGG 1 cut(s) 644
XmiI GTMKAC 3 cut(s) 210, 225, 312
XspI CTAG 2 cut(s) 512, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.