Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005227

Physical Location & Seq

Genomic Coordinates Reverse (-)

17634444 .. 17635436

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGACACCGGAGCGGCGGGCGTGGGTCTCGCCGCGTCGTCGACGTCGTCGTCGTCGTCGGCGGCGGAGGACCCGTCGTCTCGGGGATCGCCGCTCGACGCCGTCCAGGCGTGGAGCTTCGGCGTGTCGCGGCGATACCAGCACCTGCTCGACAAAACGACGCCGCACGTCCTCCACCGCTGGCTCGCAACCCTCGGCGTGGCCTTGGTCTACGTCCTCCGCGTCTACTTCGCGTTTTGCATTGCTTTCGTGATGACATTCTTCAGTGCGTTTGATGTGCCTGTGTTCTGGCCCATTCTTCTCTTCTACTGGCTAGTGCTCTTCGTTCTCACAATGAGGAGGCAGATCGTACACATGATCAAGTACAAATATGTTCCTTTCTCTATTGGAAAGCAGCGGTATGATGGAAAGAAAGCTTCTGCATCAGAAACCACGACCCTCCTACCTAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

152

Amino Acids

16.92

Weight (kDa)

9.67

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	42 - 77	5e-08	Rer1 family
Rer1	PF03248	78 - 134	1.8e-26	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23310 AT2G23310
fragaria_vesca	FvH4_1g16570 FvH4_1g16570
malus_domestica	MD15G1287700.v1.1
prunus_persica	Prupe.6G230200_v2.0.a1 Prupe.6G230200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0106471 RchiOBHm_Chr2g0106481 RchiOBHm_Chr4g0389971 RchiOBHm_Chr4g0411361
rosa_laevigata	RLG00000017501 RLG00000017505
rosa_multiflora	Rmu_co8363811.1_g000001 Rmu_sc0004015.1_g000015 Rmu_sc0004015.1_g000017
rosa_roxburghii	Rroxscaffold_2G00137140
rosa_rugosa	Rorug02G0135400 Rorug02G0135500 Rorug02G0135500 Rorug02G0135500
rosa_samantha	Rh2AG187000 Rh2AG187100 Rh2BG197700 Rh2BG197900 Rh2CG192000 Rh2DG193100
rosa_wichuraiana	Rw0G020320 Rw2G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	153
AasI	GACNNNNNNGTC	1 cut(s)	49
AatII	GACGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	153
AccBSI	CCGCTC	2 cut(s)	14, 94
AccI	GTMKAC	3 cut(s)	41, 210, 225
AccII	CGCG	4 cut(s)	35, 130, 222, 233
AclWI	GGATC	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	247
AcyI	GRCGYC	3 cut(s)	44, 99, 161
AfaI	GTAC	2 cut(s)	351, 365
AfiI	CCNNNNNNNGG	2 cut(s)	199, 448
AhdI	GACNNNNNGTC	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	117, 416
AluI	AGCT	2 cut(s)	117, 416
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	32, 84
AlwI	GGATC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	201, 290
ApeKI	GCWGC	1 cut(s)	394
AspA2I	CCTAGG	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	70, 291
AvaI	CYCGRG	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	32, 84
BfaI	CTAG	2 cut(s)	314, 447
BfuAI	ACCTGC	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	7 cut(s)	15, 33, 63, 92, 131, 164, 395
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	7 cut(s)	16, 34, 64, 93, 132, 165, 396
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	70
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	81
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	70, 291
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	431
BsaHI	GRCGYC	3 cut(s)	44, 99, 161
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	193, 204, 446
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 448
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	193, 204, 446
BseLI	CCNNNNNNNGG	2 cut(s)	199, 448
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	406
Bsh1236I	CGCG	4 cut(s)	35, 130, 222, 233
BshFI	GGCC	2 cut(s)	203, 292
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	199, 448
BsmAI	GTCTC	2 cut(s)	32, 84
BsmBI	CGTCTC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	203, 292
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	86, 345, 357
BspANI	GGCC	2 cut(s)	203, 292
BspFNI	CGCG	4 cut(s)	35, 130, 222, 233
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	14, 94
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	193, 204, 446
BssMI	GATC	3 cut(s)	86, 345, 357
BssNI	GRCGYC	3 cut(s)	44, 99, 161
BssT1I	CCWWGG	2 cut(s)	204, 446
Bst2UI	CCWGG	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	308, 326
BstACI	GRCGYC	3 cut(s)	44, 99, 161
BstC8I	GCNNGC	3 cut(s)	19, 182, 186
BstFNI	CGCG	4 cut(s)	35, 130, 222, 233
BstKTI	GATC	3 cut(s)	89, 348, 360
BstMAI	GTCTC	2 cut(s)	32, 84
BstMBI	GATC	3 cut(s)	86, 345, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 139
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	4 cut(s)	35, 130, 222, 233
BstV1I	GCAGC	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	203, 292
BtrI	CACGTC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	19, 182, 186
CaiI	CAGNNNCTG	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	70, 291
CseI	GACGC	4 cut(s)	24, 107, 169, 211
Csp6I	GTAC	2 cut(s)	350, 364
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	6 cut(s)	117, 184, 203, 292, 313, 416
CviKI_1	RGCY	6 cut(s)	117, 184, 203, 292, 313, 416
CviQI	GTAC	2 cut(s)	350, 364
DpnI	GATC	3 cut(s)	88, 347, 359
DpnII	GATC	3 cut(s)	86, 345, 357
DrdI	GACNNNNNNGTC	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	308, 326
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	2 cut(s)	308, 326
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	204, 446
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	204, 446
ErhI	CCWWGG	2 cut(s)	204, 446
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	1 cut(s)	358
FaiI	YATR	3 cut(s)	356, 372, 402
FatI	CATG	1 cut(s)	354
FauI	CCCGC	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	3 cut(s)	41, 210, 225
Fnu4HI	GCNGC	7 cut(s)	15, 33, 63, 92, 131, 164, 395
Fsp4HI	GCNGC	7 cut(s)	15, 33, 63, 92, 131, 164, 395
FspBI	CTAG	2 cut(s)	314, 447
GluI	GCNGC	7 cut(s)	15, 33, 63, 92, 131, 164, 395
HaeIII	GGCC	2 cut(s)	203, 292
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	4 cut(s)	24, 107, 169, 211
Hin1I	GRCGYC	3 cut(s)	44, 99, 161
Hin1II	CATG	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	414
HpaII	CCGG	1 cut(s)	9
Hpy166II	GTNNAC	4 cut(s)	42, 211, 226, 352
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	4 cut(s)	42, 211, 226, 352
HpyCH4IV	ACGT	3 cut(s)	44, 168, 213
HpyCH4V	TGCA	2 cut(s)	240, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 139
HpySE526I	ACGT	3 cut(s)	44, 168, 213
Hsp92I	GRCGYC	3 cut(s)	44, 99, 161
Hsp92II	CATG	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	86, 345, 357
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	2 cut(s)	11, 114
LpnPI	CCDG	9 cut(s)	22, 92, 119, 152, 158, 166, 274, 294, 295
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	314, 447
MaeII	ACGT	3 cut(s)	44, 168, 213
MalI	GATC	3 cut(s)	88, 347, 359
MbiI	CCGCTC	2 cut(s)	14, 94
MboI	GATC	3 cut(s)	86, 345, 357
MboII	GAAGA	4 cut(s)	253, 290, 295, 313
MhlI	GDGCHC	1 cut(s)	321
MnlI	CCTC	7 cut(s)	61, 182, 203, 227, 330, 333, 449
MspA1I	CMGCKG	2 cut(s)	180, 397
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	4 cut(s)	35, 130, 222, 233
MwoI	GCNNNNNNNGC	2 cut(s)	107, 139
NdeII	GATC	3 cut(s)	86, 345, 357
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	5 cut(s)	44, 47, 50, 53, 219
PflFI	GACNNNGTC	2 cut(s)	46, 101
PkrI	GCNGC	7 cut(s)	16, 34, 64, 93, 132, 165, 396
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	70, 291
PspPPI	RGGWCCY	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	145
PsyI	GACNNNGTC	2 cut(s)	46, 101
RsaI	GTAC	2 cut(s)	351, 365
RsaNI	GTAC	2 cut(s)	350, 364
SalI	GTCGAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	7 cut(s)	15, 33, 63, 92, 131, 164, 395
Sau3AI	GATC	3 cut(s)	86, 345, 357
Sau96I	GGNCC	2 cut(s)	70, 291
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	7 cut(s)	47, 119, 147, 171, 216, 418, 448
SfaNI	GCATC	1 cut(s)	431
SgrDI	CGTCGACG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	314, 447
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	204, 446
TaiI	ACGT	3 cut(s)	47, 171, 216
TaqI	TCGA	3 cut(s)	41, 96, 150
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	6 cut(s)	17, 35, 65, 94, 133, 166
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	394
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	2 cut(s)	46, 101
VpaK11BI	GGWCC	1 cut(s)	70
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	3 cut(s)	41, 210, 225
XspI	CTAG	2 cut(s)	314, 447
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.