Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005227

Physical Location & Seq

Genomic Coordinates Forward (+)

23336036 .. 23337908

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G230200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGACGCTGGAGCGGCGGGCGTGGGTCTCGCCGCAGCCGCCGCGGACGATCCGTTCAAGGGATCGCCGTTCGCCGCCGTCTCCGATTGGAGCTACGGTATCTCGCGCCGTTATCAGCATGTGCTCGACCGTACCACGCCGCACGTGCTGTACCGGTGGCTGGCGTGCCTGGGCGTGGCCTTGGTCTACGTCATCCGCGTGTACCTGGTCCAAGGCTTCTACGTCGTGTCGTATGGCTTGGGGATCTACATTCTCAACCTTCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCTGAGATCCACGACCTCGCCTCCGACGGCCCCTCCCTTCCCACCCGCGGATCCGATGAGTTTCGACCCTTCGTTCGCCGCCTCCCCGAATTCAAGTTCTGGTACTCTATCGCGAAGGCATTTTGCATTGCTTTTGTTATGACGTTCTTCAGTGCATTTGATGTACCTGTGTTCTGGCCTATACTTCTCTTCTACTGGGTGGTGCTCTTCGTTCTCACTATGAGGAGACAGATAGTACACATGATCAAATACAAATACGTTCCCTTCTCCTTTGGGAAACAGCGGTACGATGGGAGGAAAGCTTCTTCATCTTCAACAGAGACCGCAGGCCTCCTCCCCAGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

213

Amino Acids

24.01

Weight (kDa)

9.2

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23310 AT2G23310
fragaria_vesca	FvH4_1g16570 FvH4_1g16570
malus_domestica	MD15G1287700.v1.1
prunus_persica	Prupe.6G230200_v2.0.a1 Prupe.6G230200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0106471 RchiOBHm_Chr2g0106481 RchiOBHm_Chr4g0389971 RchiOBHm_Chr4g0411361
rosa_laevigata	RLG00000017501 RLG00000017505
rosa_multiflora	Rmu_co8363811.1_g000001 Rmu_sc0004015.1_g000015 Rmu_sc0004015.1_g000017
rosa_roxburghii	Rroxscaffold_2G00137140
rosa_rugosa	Rorug02G0135400 Rorug02G0135500 Rorug02G0135500 Rorug02G0135500
rosa_samantha	Rh2AG187000 Rh2AG187100 Rh2BG197700 Rh2BG197900 Rh2CG192000 Rh2DG193100
rosa_wichuraiana	Rw0G020320 Rw2G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	186, 288
AccII	CGCG	5 cut(s)	44, 106, 198, 339, 404
AclWI	GGATC	6 cut(s)	44, 70, 251, 292, 336, 349
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	424
AcvI	CACGTG	1 cut(s)	145
AfaI	GTAC	7 cut(s)	133, 152, 203, 395, 456, 528, 578
AfiI	CCNNNNNNNGG	5 cut(s)	59, 160, 175, 338, 631
AgeI	ACCGGT	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	58, 385, 606
AjnI	CCWGG	3 cut(s)	168, 204, 629
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	2 cut(s)	93, 593
AluI	AGCT	2 cut(s)	93, 593
Alw21I	GWGCWC	2 cut(s)	126, 498
Alw26I	GTCTC	4 cut(s)	32, 85, 511, 605
AlwI	GGATC	6 cut(s)	44, 70, 251, 292, 336, 349
AlwNI	CAGNNNCTG	1 cut(s)	636
AoxI	GGCC	4 cut(s)	177, 319, 467, 619
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AsiGI	ACCGGT	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	208, 320
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	341
BbrPI	CACGTG	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	126, 498
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	4 cut(s)	52, 62, 93, 334
BciT130I	CCWGG	3 cut(s)	170, 206, 631
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	4 cut(s)	32, 85, 511, 605
BisI	GCNGC	8 cut(s)	15, 33, 36, 39, 42, 75, 140, 370
BlsI	GCNGC	8 cut(s)	16, 34, 37, 40, 43, 76, 141, 371
Bme1390I	CCNGG	3 cut(s)	170, 206, 631
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	208, 320
BmiI	GGNNCC	2 cut(s)	322, 343
BmrFI	CCNGG	3 cut(s)	170, 206, 631
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	145
BsaI	GGTCTC	2 cut(s)	32, 605
BsaJI	CCNNGG	7 cut(s)	42, 169, 180, 211, 337, 629, 630
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	6 cut(s)	82, 112, 296, 308, 326, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 160, 175, 338, 631
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	491
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	3 cut(s)	170, 206, 631
BseDI	CCNNGG	7 cut(s)	42, 169, 180, 211, 337, 629, 630
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	5 cut(s)	59, 160, 175, 338, 631
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	285, 296
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	3 cut(s)	270, 529, 614
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	5 cut(s)	44, 106, 198, 339, 404
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	4 cut(s)	179, 321, 469, 621
BshTI	ACCGGT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	2 cut(s)	126, 498
BsiSI	CCGG	1 cut(s)	154
BslI	CCNNNNNNNGG	5 cut(s)	59, 160, 175, 338, 631
BsmAI	GTCTC	4 cut(s)	32, 85, 511, 605
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	4 cut(s)	179, 321, 469, 621
Bso31I	GGTCTC	2 cut(s)	32, 605
Bsp1286I	GDGCHC	2 cut(s)	126, 498
Bsp143I	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
Bsp68I	TCGCGA	1 cut(s)	404
BspANI	GGCC	4 cut(s)	179, 321, 469, 621
BspCNI	CTCAG	2 cut(s)	286, 295
BspFNI	CGCG	5 cut(s)	44, 106, 198, 339, 404
BspLI	GGNNCC	2 cut(s)	322, 343
BspPI	GGATC	6 cut(s)	44, 70, 251, 292, 336, 349
BspQI	GCTCTTC	1 cut(s)	503
BspTNI	GGTCTC	2 cut(s)	32, 605
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	7 cut(s)	42, 169, 180, 211, 337, 629, 630
BssMI	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
BssT1I	CCWWGG	2 cut(s)	180, 211
Bst2UI	CCWGG	3 cut(s)	170, 206, 631
Bst4CI	ACNGT	2 cut(s)	98, 131
Bst6I	CTCTTC	2 cut(s)	485, 503
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	4 cut(s)	19, 162, 166, 619
BstDEI	CTNAG	2 cut(s)	282, 294
BstDSI	CCRYGG	2 cut(s)	42, 337
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	5 cut(s)	44, 106, 198, 339, 404
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	6 cut(s)	52, 65, 246, 300, 344, 537
BstMAI	GTCTC	4 cut(s)	32, 85, 511, 605
BstMBI	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 38, 41, 145
BstNI	CCWGG	3 cut(s)	170, 206, 631
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	168, 204, 629
BstUI	CGCG	5 cut(s)	44, 106, 198, 339, 404
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	3 cut(s)	243, 297, 341
BstYI	RGATCY	3 cut(s)	243, 297, 341
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	179, 321, 469, 621
BtgI	CCRYGG	2 cut(s)	42, 337
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	448
BtuMI	TCGCGA	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	19, 162, 166, 619
CaiI	CAGNNNCTG	1 cut(s)	636
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	208, 320
Cfr42I	CCGCGG	2 cut(s)	45, 340
CseI	GACGC	1 cut(s)	14
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	7 cut(s)	132, 151, 202, 394, 455, 527, 577
CspAI	ACCGGT	1 cut(s)	153
CviAII	CATG	2 cut(s)	119, 532
CviQI	GTAC	7 cut(s)	132, 151, 202, 394, 455, 527, 577
DdeI	CTNAG	2 cut(s)	282, 294
DpnI	GATC	6 cut(s)	51, 64, 245, 299, 343, 536
DpnII	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
Eam1104I	CTCTTC	2 cut(s)	485, 503
EarI	CTCTTC	2 cut(s)	485, 503
Eco130I	CCWWGG	2 cut(s)	180, 211
Eco147I	AGGCCT	1 cut(s)	621
Eco31I	GGTCTC	2 cut(s)	32, 605
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	424
Eco72I	CACGTG	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	3 cut(s)	168, 204, 629
EcoT14I	CCWWGG	2 cut(s)	180, 211
ErhI	CCWWGG	2 cut(s)	180, 211
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	122, 535
FaiI	YATR	6 cut(s)	120, 234, 431, 473, 512, 533
FatI	CATG	2 cut(s)	118, 531
FauI	CCCGC	2 cut(s)	10, 344
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	2 cut(s)	186, 288
Fnu4HI	GCNGC	8 cut(s)	15, 33, 36, 39, 42, 75, 140, 370
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	8 cut(s)	15, 33, 36, 39, 42, 75, 140, 370
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	8 cut(s)	15, 33, 36, 39, 42, 75, 140, 370
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	4 cut(s)	179, 321, 469, 621
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	122, 535
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	591
HpaII	CCGG	1 cut(s)	154
Hpy166II	GTNNAC	4 cut(s)	187, 202, 289, 529
Hpy188I	TCNGA	3 cut(s)	85, 316, 346
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	4 cut(s)	187, 202, 289, 529
Hpy99I	CGWCG	2 cut(s)	227, 320
HpyAV	CCTTC	5 cut(s)	269, 338, 370, 400, 565
HpyCH4III	ACNGT	2 cut(s)	98, 131
HpyCH4IV	ACGT	5 cut(s)	144, 189, 222, 434, 549
HpyCH4V	TGCA	2 cut(s)	417, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 38, 41, 145
HpyF3I	CTNAG	2 cut(s)	282, 294
HpySE526I	ACGT	5 cut(s)	144, 189, 222, 434, 549
Hsp92II	CATG	2 cut(s)	122, 535
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	534
KspI	CCGCGG	2 cut(s)	45, 340
Kzo9I	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
LguI	GCTCTTC	1 cut(s)	503
LmnI	GCTCC	2 cut(s)	11, 90
Lsp1109I	GCAGC	1 cut(s)	47
MabI	ACCWGGT	1 cut(s)	204
MaeII	ACGT	5 cut(s)	144, 189, 222, 434, 549
MalI	GATC	6 cut(s)	51, 64, 245, 299, 343, 536
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
MboII	GAAGA	5 cut(s)	430, 472, 490, 588, 594
MflI	RGATCY	3 cut(s)	243, 297, 341
MhlI	GDGCHC	2 cut(s)	126, 498
MluCI	AATT	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	9 cut(s)	291, 317, 322, 334, 383, 507, 579, 632, 635
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	3 cut(s)	44, 339, 574
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	3 cut(s)	170, 206, 631
MvaI	CCWGG	3 cut(s)	170, 206, 631
MvnI	CGCG	5 cut(s)	44, 106, 198, 339, 404
MwoI	GCNNNNNNNGC	4 cut(s)	14, 38, 41, 145
NdeII	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
NlaIII	CATG	2 cut(s)	122, 535
NlaIV	GGNNCC	2 cut(s)	322, 343
NruI	TCGCGA	1 cut(s)	404
NspI	RCATGY	1 cut(s)	122
PasI	CCCWGGG	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PinAI	ACCGGT	1 cut(s)	153
PkrI	GCNGC	8 cut(s)	16, 34, 37, 40, 43, 76, 141, 371
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	168, 204, 629
PspCI	CACGTG	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	168, 204, 629
PspN4I	GGNNCC	2 cut(s)	322, 343
PspPI	GGNCC	2 cut(s)	208, 320
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	3 cut(s)	243, 297, 341
RruI	TCGCGA	1 cut(s)	404
RsaI	GTAC	7 cut(s)	133, 152, 203, 395, 456, 528, 578
RsaNI	GTAC	7 cut(s)	132, 151, 202, 394, 455, 527, 577
RseI	CAYNNNNRTG	1 cut(s)	197
SacII	CCGCGG	2 cut(s)	45, 340
SalI	GTCGAC	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	503
SatI	GCNGC	8 cut(s)	15, 33, 36, 39, 42, 75, 140, 370
Sau3AI	GATC	6 cut(s)	49, 62, 243, 297, 341, 534
Sau96I	GGNCC	2 cut(s)	208, 320
ScrFI	CCNGG	3 cut(s)	170, 206, 631
SduI	GDGCHC	2 cut(s)	126, 498
SexAI	ACCWGGT	1 cut(s)	204
Sfr303I	CCGCGG	2 cut(s)	45, 340
SgrBI	CCGCGG	2 cut(s)	45, 340
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	380
SseBI	AGGCCT	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	621
StyD4I	CCNGG	3 cut(s)	168, 204, 629
StyI	CCWWGG	2 cut(s)	180, 211
TaaI	ACNGT	2 cut(s)	98, 131
TaiI	ACGT	5 cut(s)	147, 192, 225, 437, 552
TaqI	TCGA	3 cut(s)	126, 288, 355
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	7 cut(s)	17, 35, 41, 44, 77, 142, 372
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	588
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	2 cut(s)	186, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.