FvH4_1g16570

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005227
Physical Location & Seq
Reverse (-)
9549530 .. 9551180
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16570.t2

Sequence Viewer

Length: 648 bp
ATGGACCCCGGAGCGGCGGGCGTCGGTCTCGCCGCGGCCACCACCGCCGACGACCCCCCGTCGTCGTCTCTTGGATCGTCAACGCCACTCGACGCCGTCCAGGCCTGGACCTTCGGCGTCTCCCGCCGTTACCAGCACCTGCTCGACAAGTCGACGCCGCACGTGCTCCACCGCTGGCTAGGCACCCTCGCCGTGGCCCTGGTCTACGTCCTCCGCGTCTACCTCGTCGAAGGATTCTACGTCGTGTCGTACGGGCTAGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTCTCCGACGGGCCCTCCCTCCCCACTCGCGGATCCGACGAGTTCCGCCCCTTCGTCCGCCGCCTCCCCGAGTTTAAATTCTGGTACTCTATTACAAAGGCGTTTTGCATTGCTTTCGTGATGACATTCTTCAGTGCTTTCGATGTGCCGGTGTTCTGGCCTATTCTTCTGTTTTACTGGCTGGTGCTGTTTGTTCTCACAATGAGGAGGCAGATCATTCACATGATCAAGTACAAATATGTTCCTTTCTCGGTTGGGAAGCAGCGGTACGATGGGAAGAAAGCTTCTGCGTCGGAAACCACAACCCTCCTACCGAGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

216

Amino Acids

24.27

Weight (kDa)

8.94

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 39 - 198 1.2e-77 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 4 cut(s) 152, 204, 219, 306
AccII CGCG 3 cut(s) 35, 216, 354
AclWI GGATC 5 cut(s) 82, 269, 310, 351, 364
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 439
AcvI CACGTG 1 cut(s) 163
AcyI GRCGYC 4 cut(s) 21, 93, 117, 155
AfaI GTAC 4 cut(s) 251, 410, 557, 593
AfiI CCNNNNNNNGG 4 cut(s) 13, 193, 353, 640
AhdI GACNNNNNGTC 1 cut(s) 58
AjnI CCWGG 3 cut(s) 99, 104, 198
AluBI AGCT 1 cut(s) 608
AluI AGCT 1 cut(s) 608
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 3 cut(s) 32, 72, 124
AlwI GGATC 5 cut(s) 82, 269, 310, 351, 364
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 5 cut(s) 36, 102, 195, 335, 482
ApaI GGGCCC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 5 cut(s) 4, 108, 196, 335, 336
AsuC2I CCSGG 2 cut(s) 9, 311
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 4, 108
AxyI CCTNAGG 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 339
BamHI GGATCC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 575, 607
BbrPI CACGTG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 598
BccI CCATC 1 cut(s) 590
BceAI ACGGC 3 cut(s) 80, 111, 176
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 3 cut(s) 101, 106, 200
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 2 cut(s) 9, 311
BcoDI GTCTC 3 cut(s) 32, 72, 124
BfaI CTAG 2 cut(s) 179, 257
BfuAI ACCTGC 1 cut(s) 147
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 6 cut(s) 15, 33, 36, 158, 385, 587
BlsI GCNGC 6 cut(s) 16, 34, 37, 159, 386, 588
Bme1390I CCNGG 5 cut(s) 9, 101, 106, 200, 311
Bme18I GGWCC 2 cut(s) 4, 108
BmeRI GACNNNNNGTC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 5 cut(s) 4, 108, 196, 335, 336
BmiI GGNNCC 4 cut(s) 6, 184, 337, 358
BmrFI CCNGG 5 cut(s) 9, 101, 106, 200, 311
BpuMI CCSGG 2 cut(s) 9, 311
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 4 cut(s) 21, 93, 117, 155
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 5 cut(s) 7, 33, 192, 198, 638
BsaXI ACNNNNNCTCC 4 cut(s) 311, 323, 341, 353
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 193, 353, 640
Bse118I RCCGGY 1 cut(s) 472
Bse1I ACTGG 1 cut(s) 506
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 3 cut(s) 101, 106, 200
BseDI CCNNGG 5 cut(s) 7, 33, 192, 198, 638
BseLI CCNNNNNNNGG 4 cut(s) 13, 193, 353, 640
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 3 cut(s) 260, 288, 544
BseSI GKGCMC 1 cut(s) 339
BseXI GCAGC 1 cut(s) 598
Bsh1236I CGCG 3 cut(s) 35, 216, 354
BshFI GGCC 5 cut(s) 38, 104, 197, 337, 484
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 3 cut(s) 9, 311, 473
BsiWI CGTACG 1 cut(s) 249
BslI CCNNNNNNNGG 4 cut(s) 13, 193, 353, 640
BsmAI GTCTC 3 cut(s) 32, 72, 124
BsmBI CGTCTC 2 cut(s) 72, 124
BsnI GGCC 5 cut(s) 38, 104, 197, 337, 484
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 392
Bsp120I GGGCCC 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 168, 339
Bsp143I GATC 6 cut(s) 74, 261, 315, 356, 537, 549
BspANI GGCC 5 cut(s) 38, 104, 197, 337, 484
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 3 cut(s) 35, 216, 354
BspLI GGNNCC 4 cut(s) 6, 184, 337, 358
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 5 cut(s) 82, 269, 310, 351, 364
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 472
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 5 cut(s) 7, 33, 192, 198, 638
BssMI GATC 6 cut(s) 74, 261, 315, 356, 537, 549
BssNI GRCGYC 4 cut(s) 21, 93, 117, 155
Bst2UI CCWGG 3 cut(s) 101, 106, 200
BstACI GRCGYC 4 cut(s) 21, 93, 117, 155
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 19, 176
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 2 cut(s) 33, 192
BstFNI CGCG 3 cut(s) 35, 216, 354
BstKTI GATC 6 cut(s) 77, 264, 318, 359, 540, 552
BstMAI GTCTC 3 cut(s) 32, 72, 124
BstMBI GATC 6 cut(s) 74, 261, 315, 356, 537, 549
BstMWI GCNNNNNNNGC 5 cut(s) 44, 101, 123, 163, 180
BstNI CCWGG 3 cut(s) 101, 106, 200
BstSCI CCNGG 5 cut(s) 7, 99, 104, 198, 309
BstSLI GKGCMC 1 cut(s) 339
BstUI CGCG 3 cut(s) 35, 216, 354
BstV1I GCAGC 1 cut(s) 598
BstX2I RGATCY 3 cut(s) 261, 315, 356
BstYI RGATCY 3 cut(s) 261, 315, 356
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 5 cut(s) 38, 104, 197, 337, 484
BtgI CCRYGG 2 cut(s) 33, 192
BtsIMutI CAGTG 1 cut(s) 463
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 19, 176
CaiI CAGNNNCTG 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 5 cut(s) 4, 108, 196, 335, 336
Cfr42I CCGCGG 1 cut(s) 36
CseI GACGC 6 cut(s) 10, 101, 106, 163, 205, 603
Csp6I GTAC 4 cut(s) 250, 409, 556, 592
CviAII CATG 1 cut(s) 547
CviQI GTAC 4 cut(s) 250, 409, 556, 592
DdeI CTNAG 1 cut(s) 300
DpnI GATC 6 cut(s) 76, 263, 317, 358, 539, 551
DpnII GATC 6 cut(s) 74, 261, 315, 356, 537, 549
DraI TTTAAA 1 cut(s) 400
DriI GACNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 36
Eam1105I GACNNNNNGTC 1 cut(s) 58
EciI GGCGGA 2 cut(s) 359, 371
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 4, 108
Eco57I CTGAAG 1 cut(s) 439
Eco72I CACGTG 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 336
EcoRII CCWGG 3 cut(s) 99, 104, 198
EcoT38I GRGCYC 1 cut(s) 339
Esp3I CGTCTC 2 cut(s) 72, 124
FaeI CATG 1 cut(s) 550
FaiI YATR 2 cut(s) 548, 564
FatI CATG 1 cut(s) 546
FauI CCCGC 2 cut(s) 10, 131
FbaI TGATCA 1 cut(s) 549
FblI GTMKAC 4 cut(s) 152, 204, 219, 306
Fnu4HI GCNGC 6 cut(s) 15, 33, 36, 158, 385, 587
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 6 cut(s) 15, 33, 36, 158, 385, 587
FspBI CTAG 2 cut(s) 179, 257
GluI GCNGC 6 cut(s) 15, 33, 36, 158, 385, 587
HaeIII GGCC 5 cut(s) 38, 104, 197, 337, 484
HapII CCGG 3 cut(s) 9, 311, 473
HgaI GACGC 6 cut(s) 10, 101, 106, 163, 205, 603
Hin1I GRCGYC 4 cut(s) 21, 93, 117, 155
Hin1II CATG 1 cut(s) 550
HincII GTYRAC 3 cut(s) 81, 153, 307
HindII GTYRAC 3 cut(s) 81, 153, 307
HindIII AAGCTT 1 cut(s) 606
HinfI GANTC 1 cut(s) 234
HpaII CCGG 3 cut(s) 9, 311, 473
Hpy166II GTNNAC 5 cut(s) 81, 153, 205, 220, 307
Hpy188I TCNGA 3 cut(s) 331, 361, 619
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 5 cut(s) 81, 153, 205, 220, 307
HpyAV CCTTC 3 cut(s) 121, 224, 385
HpyCH4IV ACGT 3 cut(s) 162, 207, 240
HpyCH4V TGCA 1 cut(s) 432
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 101, 123, 163, 180
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 3 cut(s) 162, 207, 240
Hsp92I GRCGYC 4 cut(s) 21, 93, 117, 155
Hsp92II CATG 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 549
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 6 cut(s) 74, 261, 315, 356, 537, 549
LmnI GCTCC 2 cut(s) 11, 171
Lsp1109I GCAGC 1 cut(s) 598
MaeI CTAG 2 cut(s) 179, 257
MaeII ACGT 3 cut(s) 162, 207, 240
MaeIII GTNAC 1 cut(s) 128
MalI GATC 6 cut(s) 76, 263, 317, 358, 539, 551
MbiI CCGCTC 1 cut(s) 14
MboI GATC 6 cut(s) 74, 261, 315, 356, 537, 549
MboII GAAGA 3 cut(s) 445, 482, 613
MflI RGATCY 3 cut(s) 261, 315, 356
MhlI GDGCHC 2 cut(s) 168, 339
MluCI AATT 1 cut(s) 401
MmeI TCCRAC 3 cut(s) 354, 384, 597
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 3 cut(s) 35, 174, 589
MspI CCGG 3 cut(s) 9, 311, 473
MspR9I CCNGG 5 cut(s) 9, 101, 106, 200, 311
MvaI CCWGG 3 cut(s) 101, 106, 200
MvnI CGCG 3 cut(s) 35, 216, 354
MwoI GCNNNNNNNGC 5 cut(s) 44, 101, 123, 163, 180
NciI CCSGG 2 cut(s) 9, 311
NdeII GATC 6 cut(s) 74, 261, 315, 356, 537, 549
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 4 cut(s) 6, 184, 337, 358
PaqCI CACCTGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 104
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 327
PfeI GAWTC 1 cut(s) 234
Pfl23II CGTACG 1 cut(s) 249
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 6 cut(s) 16, 34, 37, 159, 386, 588
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
Ppu21I YACGTR 1 cut(s) 163
Psp6I CCWGG 3 cut(s) 99, 104, 198
PspCI CACGTG 1 cut(s) 163
PspGI CCWGG 3 cut(s) 99, 104, 198
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 4 cut(s) 6, 184, 337, 358
PspOMI GGGCCC 1 cut(s) 335
PspPI GGNCC 5 cut(s) 4, 108, 196, 335, 336
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 3 cut(s) 261, 315, 356
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 4 cut(s) 251, 410, 557, 593
RsaNI GTAC 4 cut(s) 250, 409, 556, 592
RseI CAYNNNNRTG 1 cut(s) 545
SacII CCGCGG 1 cut(s) 36
SalI GTCGAC 2 cut(s) 151, 305
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 6 cut(s) 15, 33, 36, 158, 385, 587
Sau3AI GATC 6 cut(s) 74, 261, 315, 356, 537, 549
Sau96I GGNCC 5 cut(s) 4, 108, 196, 335, 336
ScrFI CCNGG 5 cut(s) 9, 101, 106, 200, 311
SduI GDGCHC 2 cut(s) 168, 339
Sfr303I CCGCGG 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 36
SinI GGWCC 2 cut(s) 4, 108
SmiMI CAYNNNNRTG 1 cut(s) 545
Sse9I AATT 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 104
SspMI CTAG 2 cut(s) 179, 257
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 5 cut(s) 7, 99, 104, 198, 309
TaiI ACGT 3 cut(s) 165, 210, 243
TaqI TCGA 6 cut(s) 90, 144, 152, 228, 306, 465
TaqII GACCGA 1 cut(s) 14
TasI AATT 1 cut(s) 401
TatI WGTACW 1 cut(s) 555
TauI GCSGC 5 cut(s) 17, 35, 38, 160, 387
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 463
TseI GCWGC 1 cut(s) 586
TspRI CASTG 1 cut(s) 463
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 4, 108
XapI RAATTY 1 cut(s) 401
XmiI GTMKAC 4 cut(s) 152, 204, 219, 306
XspI CTAG 2 cut(s) 179, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.