RchiOBHm_Chr4g0389971

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005227
Physical Location & Seq
Reverse (-)
5059872 .. 5060257
386 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36306

Sequence Viewer

Length: 168 bp
ATGTCATACGCCTTGGGGATCTACCTCCTCAACTTGCTCATCAGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGACCCCAGCCTCCAGACCCGCGGATCCGACGAGTTCCGCCCCTTCGTTCGACGCCTCCCTGAGTTTAAATTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

55

Amino Acids

6.47

Weight (kDa)

4.7

Isoelectric Point (pI)

66.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 2 - 55 2e-20 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 109, 111, 127
AclWI GGATC 4 cut(s) 26, 67, 108, 121
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 142
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AlwI GGATC 4 cut(s) 26, 67, 108, 121
ApoI RAATTY 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 57
BamHI GGATCC 1 cut(s) 113
BcnI CCSGG 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 12, 109
Bse21I CCTNAGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 12, 109
BseMII CTCAG 2 cut(s) 71, 141
BseRI GAGGAG 2 cut(s) 17, 45
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 68
Bsp143I GATC 3 cut(s) 18, 72, 113
BspACI CCGC 3 cut(s) 109, 111, 127
BspCNI CTCAG 2 cut(s) 70, 142
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 4 cut(s) 26, 67, 108, 121
BssECI CCNNGG 2 cut(s) 12, 109
BssMI GATC 3 cut(s) 18, 72, 113
BssNI GRCGYC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 57, 150
BstDSI CCRYGG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 3 cut(s) 21, 75, 116
BstMBI GATC 3 cut(s) 18, 72, 113
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 18, 72, 113
BstYI RGATCY 3 cut(s) 18, 72, 113
Bsu36I CCTNAGG 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 109
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 1 cut(s) 150
CviJI RGCY 2 cut(s) 45, 99
CviKI_1 RGCY 2 cut(s) 45, 99
DdeI CTNAG 2 cut(s) 57, 150
DpnI GATC 3 cut(s) 20, 74, 115
DpnII GATC 3 cut(s) 18, 72, 113
DraI TTTAAA 1 cut(s) 157
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 12
Eco81I CCTNAGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaiI YATR 1 cut(s) 7
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 86
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 88, 118
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 3 cut(s) 92, 122, 144
HpyAV CCTTC 1 cut(s) 142
HpyF3I CTNAG 2 cut(s) 57, 150
Hsp92I GRCGYC 1 cut(s) 142
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 18, 72, 113
LpnPI CCDG 6 cut(s) 44, 81, 109, 116, 148, 162
MalI GATC 3 cut(s) 20, 74, 115
MboI GATC 3 cut(s) 18, 72, 113
MflI RGATCY 3 cut(s) 18, 72, 113
MluCI AATT 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 111, 141
MnlI CCTC 5 cut(s) 35, 38, 66, 110, 155
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 111
NciI CCSGG 1 cut(s) 68
NdeII GATC 3 cut(s) 18, 72, 113
NlaIV GGNNCC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 115
PsuI RGATCY 3 cut(s) 18, 72, 113
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 3 cut(s) 18, 72, 113
ScrFI CCNGG 1 cut(s) 68
SetI ASST 4 cut(s) 27, 47, 63, 84
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
Sse9I AATT 1 cut(s) 158
SsiI CCGC 3 cut(s) 109, 111, 127
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 12
TaqI TCGA 2 cut(s) 63, 139
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.