RchiOBHm_Chr4g0411361

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005227
Physical Location & Seq
Reverse (-)
35230190 .. 35230357
168 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38218

Sequence Viewer

Length: 168 bp
ATGTCATACAGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCTGGAGATCCACGACCTTTCCGATGGCCCCAGCCTCTGGACCCGCGGATCCTACGAGTTCCACCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

55

Amino Acids

6.5

Weight (kDa)

5.4

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 2 - 55 1.6e-17 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 111
AciI CCGC 2 cut(s) 109, 111
AclWI GGATC 4 cut(s) 26, 67, 108, 121
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 102
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
AlwI GGATC 4 cut(s) 26, 67, 108, 121
AlwNI CAGNNNCTG 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 92, 105
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 105
AxyI CCTNAGG 1 cut(s) 57
BamHI GGATCC 1 cut(s) 113
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 92, 105
BmiI GGNNCC 3 cut(s) 94, 107, 115
BmrFI CCNGG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse21I CCTNAGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 17, 45
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 102
BsnI GGCC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 3 cut(s) 18, 72, 113
BspACI CCGC 2 cut(s) 109, 111
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 94, 107, 115
BspPI GGATC 4 cut(s) 26, 67, 108, 121
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 18, 72, 113
BssNI GRCGYC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 3 cut(s) 21, 75, 116
BstMBI GATC 3 cut(s) 18, 72, 113
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 18, 72, 113
BstYI RGATCY 3 cut(s) 18, 72, 113
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 109
CaiI CAGNNNCTG 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 92, 105
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 1 cut(s) 150
CviJI RGCY 4 cut(s) 12, 45, 93, 99
CviKI_1 RGCY 4 cut(s) 12, 45, 93, 99
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 20, 74, 115
DpnII GATC 3 cut(s) 18, 72, 113
DraI TTTAAA 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 66
FaiI YATR 1 cut(s) 7
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 93
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 142
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 18, 72, 113
LpnPI CCDG 6 cut(s) 44, 53, 80, 88, 109, 148
MalI GATC 3 cut(s) 20, 74, 115
MboI GATC 3 cut(s) 18, 72, 113
MflI RGATCY 3 cut(s) 18, 72, 113
MluCI AATT 1 cut(s) 158
MnlI CCTC 5 cut(s) 35, 38, 66, 110, 155
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 111
NdeII GATC 3 cut(s) 18, 72, 113
NlaIV GGNNCC 3 cut(s) 94, 107, 115
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 3 cut(s) 94, 107, 115
PspPI GGNCC 2 cut(s) 92, 105
PstNI CAGNNNCTG 1 cut(s) 102
PsuI RGATCY 3 cut(s) 18, 72, 113
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 3 cut(s) 18, 72, 113
Sau96I GGNCC 2 cut(s) 92, 105
ScrFI CCNGG 1 cut(s) 68
SetI ASST 5 cut(s) 14, 27, 63, 69, 84
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 1 cut(s) 105
Sse9I AATT 1 cut(s) 158
SsiI CCGC 2 cut(s) 109, 111
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 2 cut(s) 63, 139
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.