Rw0G020320

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00914
OG0005227
Physical Location & Seq
Forward (+)
111157 .. 111688
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020320.1

Sequence Viewer

Length: 222 bp
ATGTCATACGGCTTGGGGATCTACCTCCTCAACTTGCTCATTAGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTCCCGACGGCCCCAGCCTCCCGACCAGCGGACCCGACGAGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCAAAAAATTTGAGGGTAAATCGGTCATTTTGTCTTCATTAAGTGACTCACGTGCACTGCACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

73

Amino Acids

7.94

Weight (kDa)

5.0

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 2 - 42 2.3e-08 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 26, 67
AcsI RAATTY 1 cut(s) 161
AcvI CACGTG 2 cut(s) 206, 217
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 211
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 2 cut(s) 26, 67
AoxI GGCC 1 cut(s) 91
ApaLI GTGCAC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 92, 113
AsuC2I CCSGG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 211
BbrPI CACGTG 2 cut(s) 206, 217
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 211
BceAI ACGGC 2 cut(s) 25, 106
BcnI CCSGG 1 cut(s) 68
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 92, 113
BmiI GGNNCC 2 cut(s) 94, 115
BmrFI CCNGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 68
BsaAI YACGTR 2 cut(s) 206, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 17, 45
BseSI GKGCMC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 18, 72
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 94, 115
BspPI GGATC 2 cut(s) 26, 67
BsrDI GCAATG 1 cut(s) 147
BssMI GATC 2 cut(s) 18, 72
BstBAI YACGTR 2 cut(s) 206, 217
BstDEI CTNAG 1 cut(s) 57
BstKTI GATC 2 cut(s) 21, 75
BstMBI GATC 2 cut(s) 18, 72
BstSCI CCNGG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 2 cut(s) 18, 72
BstYI RGATCY 2 cut(s) 18, 72
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 92, 113
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 4 cut(s) 12, 45, 93, 99
CviKI_1 RGCY 4 cut(s) 12, 45, 93, 99
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 20, 74
DpnII GATC 2 cut(s) 18, 72
Eco47I GGWCC 1 cut(s) 113
Eco72I CACGTG 2 cut(s) 206, 217
Eco81I CCTNAGG 1 cut(s) 57
FaiI YATR 1 cut(s) 7
FblI GTMKAC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 64, 209
Hpy188III TCNNGA 2 cut(s) 86, 103
Hpy8I GTNNAC 2 cut(s) 64, 209
Hpy99I CGWCG 2 cut(s) 92, 122
HpyAV CCTTC 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 205, 216
HpyCH4V TGCA 3 cut(s) 147, 209, 214
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 2 cut(s) 205, 216
Kzo9I GATC 2 cut(s) 18, 72
LpnPI CCDG 4 cut(s) 44, 81, 109, 121
MaeII ACGT 2 cut(s) 205, 216
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 20, 74
MboI GATC 2 cut(s) 18, 72
MboII GAAGA 1 cut(s) 180
MflI RGATCY 2 cut(s) 18, 72
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 2 cut(s) 129, 161
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 5 cut(s) 35, 38, 66, 110, 160
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 68
NciI CCSGG 1 cut(s) 68
NdeII GATC 2 cut(s) 18, 72
NlaIV GGNNCC 2 cut(s) 94, 115
NmuCI GTSAC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PleI GAGTC 1 cut(s) 194
PmaCI CACGTG 2 cut(s) 206, 217
PmlI CACGTG 2 cut(s) 206, 217
PpsI GAGTC 1 cut(s) 194
Ppu21I YACGTR 2 cut(s) 206, 217
PspCI CACGTG 2 cut(s) 206, 217
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 94, 115
PspPI GGNCC 2 cut(s) 92, 113
PsuI RGATCY 2 cut(s) 18, 72
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 2 cut(s) 18, 72
Sau96I GGNCC 2 cut(s) 92, 113
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 211
SetI ASST 6 cut(s) 27, 47, 63, 84, 208, 219
SinI GGWCC 1 cut(s) 113
Sse9I AATT 2 cut(s) 129, 161
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 66
TaiI ACGT 2 cut(s) 208, 219
TaqI TCGA 1 cut(s) 63
TaqII GACCGA 1 cut(s) 166
TasI AATT 2 cut(s) 129, 161
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 216
VneI GTGCAC 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.