Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8363811.1

Orthogroup ID

OG0005227

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 793

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8363811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggacaccggagcggcgggcgtgggtctcgccgccaccgccgacccgtcgtctcagggatcgccgctcgacgcattccaggcattgagcttcggcgtctcgcgccgatttcagcacttgctcgacaaaacgacgccgcacctcctctaccgctggctcgccaccctcgccgtcgccttggtctacgccttccgcatctaccgggtccagggattctacgtcgtgtcgtacggcttggggatctacctcctcaacttgctcattggctttctctctcctcaggtcgacccggagatccatgacctttccgacggccccagcctccccacccgcggatccgacgagttccgccccttcgttcgacggctccccgagtttaaattctggtactcaattacaaaggcgttttgcattgctttcgtgatgacattcttcagtgcatttgatgtgcctgtgttctggcccattcttctcttttactggcttgtgctctttgttctcacaatgaggaggcagatcgtgcacatgattaagtacaaatatgttcctttctctattggcaagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

189

Amino Acids

21.61

Weight (kDa)

9.41

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23310 AT2G23310
fragaria_vesca	FvH4_1g16570 FvH4_1g16570
malus_domestica	MD15G1287700.v1.1
prunus_persica	Prupe.6G230200_v2.0.a1 Prupe.6G230200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0106471 RchiOBHm_Chr2g0106481 RchiOBHm_Chr4g0389971 RchiOBHm_Chr4g0411361
rosa_laevigata	RLG00000017501 RLG00000017505
rosa_multiflora	Rmu_co8363811.1_g000001 Rmu_sc0004015.1_g000015 Rmu_sc0004015.1_g000017
rosa_roxburghii	Rroxscaffold_2G00137140
rosa_rugosa	Rorug02G0135400 Rorug02G0135500 Rorug02G0135500 Rorug02G0135500
rosa_samantha	Rh2AG187000 Rh2AG187100 Rh2BG197700 Rh2BG197900 Rh2CG192000 Rh2DG193100
rosa_wichuraiana	Rw0G020320 Rw2G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	14, 67
AccI	GTMKAC	2 cut(s)	183, 285
AccII	CGCG	2 cut(s)	103, 333
AclWI	GGATC	5 cut(s)	67, 248, 289, 330, 343
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	418
AcyI	GRCGYC	2 cut(s)	96, 134
AfaI	GTAC	3 cut(s)	230, 389, 536
AfiI	CCNNNNNNNGG	2 cut(s)	208, 332
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	78, 207
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw21I	GWGCWC	2 cut(s)	492, 525
Alw26I	GTCTC	3 cut(s)	32, 57, 103
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	5 cut(s)	67, 248, 289, 330, 343
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	313, 461
ApaLI	GTGCAC	1 cut(s)	521
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	205, 314, 462
AsuC2I	CCSGG	2 cut(s)	203, 290
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	525
BamHI	GGATCC	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	492, 525
BceAI	ACGGC	4 cut(s)	155, 247, 328, 380
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	2 cut(s)	80, 209
BcnI	CCSGG	2 cut(s)	203, 290
BcoDI	GTCTC	3 cut(s)	32, 57, 103
BisI	GCNGC	4 cut(s)	15, 33, 65, 137
BlsI	GCNGC	4 cut(s)	16, 34, 66, 138
Bme1390I	CCNGG	4 cut(s)	80, 203, 209, 290
Bme18I	GGWCC	1 cut(s)	205
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	205, 314, 462
BmiI	GGNNCC	4 cut(s)	206, 316, 337, 368
BmrFI	CCNGG	4 cut(s)	80, 203, 209, 290
BmsI	GCATC	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	203, 290
BsaHI	GRCGYC	2 cut(s)	96, 134
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	177, 208, 331
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 332
Bse1I	ACTGG	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	80, 209
BseDI	CCNNGG	3 cut(s)	177, 208, 331
BseLI	CCNNNNNNNGG	2 cut(s)	208, 332
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	68, 293
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	4 cut(s)	134, 239, 267, 523
BseSI	GKGCMC	1 cut(s)	525
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	103, 333
BshFI	GGCC	2 cut(s)	315, 463
BsiHKAI	GWGCWC	2 cut(s)	492, 525
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	9, 202, 290
BsiWI	CGTACG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	208, 332
BsmAI	GTCTC	3 cut(s)	32, 57, 103
BsmBI	CGTCTC	2 cut(s)	57, 103
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	315, 463
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	492, 525
Bsp143I	GATC	5 cut(s)	59, 240, 294, 335, 516
BspANI	GGCC	2 cut(s)	315, 463
BspCNI	CTCAG	2 cut(s)	67, 292
BspFNI	CGCG	2 cut(s)	103, 333
BspLI	GGNNCC	4 cut(s)	206, 316, 337, 368
BspPI	GGATC	5 cut(s)	67, 248, 289, 330, 343
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	14, 67
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	177, 208, 331
BssMI	GATC	5 cut(s)	59, 240, 294, 335, 516
BssNI	GRCGYC	2 cut(s)	96, 134
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	80, 209
BstACI	GRCGYC	2 cut(s)	96, 134
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	4 cut(s)	19, 155, 159, 563
BstDEI	CTNAG	2 cut(s)	54, 279
BstDSI	CCRYGG	1 cut(s)	331
BstFNI	CGCG	2 cut(s)	103, 333
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	62, 243, 297, 338, 519
BstMAI	GTCTC	3 cut(s)	32, 57, 103
BstMBI	GATC	5 cut(s)	59, 240, 294, 335, 516
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 80, 102, 167, 520
BstNI	CCWGG	2 cut(s)	80, 209
BstSCI	CCNGG	4 cut(s)	78, 201, 207, 288
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	2 cut(s)	103, 333
BstX2I	RGATCY	3 cut(s)	240, 294, 335
BstYI	RGATCY	3 cut(s)	240, 294, 335
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	315, 463
BtgI	CCRYGG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	19, 155, 159, 563
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	205, 314, 462
Cfr42I	CCGCGG	1 cut(s)	334
CseI	GACGC	3 cut(s)	80, 85, 142
Csp6I	GTAC	3 cut(s)	229, 388, 535
CviAII	CATG	2 cut(s)	299, 526
CviJI	RGCY	9 cut(s)	90, 157, 234, 267, 315, 321, 367, 463, 484
CviKI_1	RGCY	9 cut(s)	90, 157, 234, 267, 315, 321, 367, 463, 484
CviQI	GTAC	3 cut(s)	229, 388, 535
DdeI	CTNAG	2 cut(s)	54, 279
DpnI	GATC	5 cut(s)	61, 242, 296, 337, 518
DpnII	GATC	5 cut(s)	59, 240, 294, 335, 516
DraI	TTTAAA	1 cut(s)	379
DriI	GACNNNNNGTC	1 cut(s)	49
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	78, 207
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	2 cut(s)	57, 103
FaeI	CATG	2 cut(s)	302, 529
FaiI	YATR	3 cut(s)	300, 527, 543
FatI	CATG	2 cut(s)	298, 525
FauI	CCCGC	2 cut(s)	10, 338
FblI	GTMKAC	2 cut(s)	183, 285
Fnu4HI	GCNGC	4 cut(s)	15, 33, 65, 137
Fsp4HI	GCNGC	4 cut(s)	15, 33, 65, 137
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	15, 33, 65, 137
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	315, 463
HapII	CCGG	3 cut(s)	9, 202, 290
HgaI	GACGC	3 cut(s)	80, 85, 142
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	96, 134
Hin1II	CATG	2 cut(s)	302, 529
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	3 cut(s)	9, 202, 290
Hpy166II	GTNNAC	3 cut(s)	184, 286, 523
Hpy188I	TCNGA	2 cut(s)	310, 340
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	3 cut(s)	184, 286, 523
Hpy99I	CGWCG	8 cut(s)	52, 74, 136, 176, 224, 314, 344, 366
HpyAV	CCTTC	2 cut(s)	199, 364
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	411, 440, 523
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 80, 102, 167, 520
HpyF3I	CTNAG	2 cut(s)	54, 279
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	2 cut(s)	96, 134
Hsp92II	CATG	2 cut(s)	302, 529
HspAI	GCGC	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	59, 240, 294, 335, 516
LmnI	GCTCC	2 cut(s)	11, 372
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	1 cut(s)	219
MalI	GATC	5 cut(s)	61, 242, 296, 337, 518
MbiI	CCGCTC	2 cut(s)	14, 67
MboI	GATC	5 cut(s)	59, 240, 294, 335, 516
MboII	GAAGA	2 cut(s)	424, 461
MflI	RGATCY	3 cut(s)	240, 294, 335
MhlI	GDGCHC	2 cut(s)	492, 525
MluCI	AATT	2 cut(s)	380, 393
MmeI	TCCRAC	2 cut(s)	333, 363
MnlI	CCTC	9 cut(s)	152, 155, 176, 257, 260, 288, 332, 501, 504
MseI	TTAA	2 cut(s)	378, 531
MspA1I	CMGCKG	2 cut(s)	153, 333
MspI	CCGG	3 cut(s)	9, 202, 290
MspR9I	CCNGG	4 cut(s)	80, 203, 209, 290
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	2 cut(s)	80, 209
MvnI	CGCG	2 cut(s)	103, 333
MwoI	GCNNNNNNNGC	5 cut(s)	38, 80, 102, 167, 520
NciI	CCSGG	2 cut(s)	203, 290
NdeII	GATC	5 cut(s)	59, 240, 294, 335, 516
NlaIII	CATG	2 cut(s)	302, 529
NlaIV	GGNNCC	4 cut(s)	206, 316, 337, 368
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	213
Pfl23II	CGTACG	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	16, 34, 66, 138
Psp6I	CCWGG	2 cut(s)	78, 207
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	2 cut(s)	78, 207
PspLI	CGTACG	1 cut(s)	228
PspN4I	GGNNCC	4 cut(s)	206, 316, 337, 368
PspPI	GGNCC	3 cut(s)	205, 314, 462
PsuI	RGATCY	3 cut(s)	240, 294, 335
RsaI	GTAC	3 cut(s)	230, 389, 536
RsaNI	GTAC	3 cut(s)	229, 388, 535
SacII	CCGCGG	1 cut(s)	334
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	378, 531
SatI	GCNGC	4 cut(s)	15, 33, 65, 137
Sau3AI	GATC	5 cut(s)	59, 240, 294, 335, 516
Sau96I	GGNCC	3 cut(s)	205, 314, 462
ScrFI	CCNGG	4 cut(s)	80, 203, 209, 290
SduI	GDGCHC	2 cut(s)	492, 525
SetI	ASST	6 cut(s)	92, 144, 222, 249, 285, 306
SfaNI	GCATC	1 cut(s)	204
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	2 cut(s)	380, 393
StyD4I	CCNGG	4 cut(s)	78, 201, 207, 288
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	4 cut(s)	69, 123, 285, 361
TasI	AATT	2 cut(s)	380, 393
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	4 cut(s)	17, 35, 67, 139
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	378, 531
Tru9I	TTAA	2 cut(s)	378, 531
TscAI	CASTG	1 cut(s)	442
TspRI	CASTG	1 cut(s)	442
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	183, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.