Rh2BG197700

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005227
Physical Location & Seq
Reverse (-)
18056798 .. 18057551
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG197700.1

Sequence Viewer

Length: 390 bp
ATGGACACCGGAGCGGCGGGCGTGGGTCTCGCCGCCACCGCCGACCCGTCGTCTCAGGGATCGCCGCTCGACGCATTCCAGGCATTGAGCTTCGGCGTCTCGCGCCGATTTCAGCACTTGCTCGACAAAACGACGCCGCACCTCCTCTACCGCTGGCTCGCCACCCTCGCCGTCGCCTTGGTCTACGCCTTCCGCATCTACCGGGTCCAGGGATTCTACGTCGTGTCGTACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCAGCCTCCCGACCCGCGGATCCGACGAGTTCCGCCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

129

Amino Acids

14.36

Weight (kDa)

6.82

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 33 - 129 6.6e-40 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 14, 67
AccI GTMKAC 2 cut(s) 183, 285
AccII CGCG 2 cut(s) 103, 333
AclWI GGATC 5 cut(s) 67, 248, 289, 330, 343
AcsI RAATTY 1 cut(s) 380
AcyI GRCGYC 3 cut(s) 96, 134, 364
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 208, 332
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 78, 207
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 3 cut(s) 32, 57, 103
AlwI GGATC 5 cut(s) 67, 248, 289, 330, 343
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 205, 314
AsuC2I CCSGG 2 cut(s) 203, 290
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 279
BamHI GGATCC 1 cut(s) 335
BceAI ACGGC 3 cut(s) 155, 247, 328
BciT130I CCWGG 2 cut(s) 80, 209
BcnI CCSGG 2 cut(s) 203, 290
BcoDI GTCTC 3 cut(s) 32, 57, 103
BisI GCNGC 4 cut(s) 15, 33, 65, 137
BlsI GCNGC 4 cut(s) 16, 34, 66, 138
Bme1390I CCNGG 4 cut(s) 80, 203, 209, 290
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 205, 314
BmiI GGNNCC 3 cut(s) 206, 316, 337
BmrFI CCNGG 4 cut(s) 80, 203, 209, 290
BmsI GCATC 1 cut(s) 204
BpuMI CCSGG 2 cut(s) 203, 290
BsaHI GRCGYC 3 cut(s) 96, 134, 364
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 177, 208, 331
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 332
Bse21I CCTNAGG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 80, 209
BseDI CCNNGG 3 cut(s) 177, 208, 331
BseLI CCNNNNNNNGG 2 cut(s) 208, 332
BseMII CTCAG 2 cut(s) 68, 293
BseRI GAGGAG 3 cut(s) 134, 239, 267
BseYI CCCAGC 1 cut(s) 317
Bsh1236I CGCG 2 cut(s) 103, 333
BshFI GGCC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 9, 202, 290
BsiWI CGTACG 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 208, 332
BsmAI GTCTC 3 cut(s) 32, 57, 103
BsmBI CGTCTC 2 cut(s) 57, 103
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 1 cut(s) 315
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 371
Bsp143I GATC 4 cut(s) 59, 240, 294, 335
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 67, 292
BspFNI CGCG 2 cut(s) 103, 333
BspLI GGNNCC 3 cut(s) 206, 316, 337
BspPI GGATC 5 cut(s) 67, 248, 289, 330, 343
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 2 cut(s) 14, 67
BssECI CCNNGG 3 cut(s) 177, 208, 331
BssMI GATC 4 cut(s) 59, 240, 294, 335
BssNI GRCGYC 3 cut(s) 96, 134, 364
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 80, 209
BstACI GRCGYC 3 cut(s) 96, 134, 364
BstC8I GCNNGC 3 cut(s) 19, 155, 159
BstDEI CTNAG 2 cut(s) 54, 279
BstDSI CCRYGG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 103, 333
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 4 cut(s) 62, 243, 297, 338
BstMAI GTCTC 3 cut(s) 32, 57, 103
BstMBI GATC 4 cut(s) 59, 240, 294, 335
BstMWI GCNNNNNNNGC 4 cut(s) 38, 80, 102, 167
BstNI CCWGG 2 cut(s) 80, 209
BstSCI CCNGG 4 cut(s) 78, 201, 207, 288
BstUI CGCG 2 cut(s) 103, 333
BstX2I RGATCY 3 cut(s) 240, 294, 335
BstYI RGATCY 3 cut(s) 240, 294, 335
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 331
Cac8I GCNNGC 3 cut(s) 19, 155, 159
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 205, 314
Cfr42I CCGCGG 1 cut(s) 334
CseI GACGC 4 cut(s) 80, 85, 142, 372
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 6 cut(s) 90, 157, 234, 267, 315, 321
CviKI_1 RGCY 6 cut(s) 90, 157, 234, 267, 315, 321
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 54, 279
DpnI GATC 4 cut(s) 61, 242, 296, 337
DpnII GATC 4 cut(s) 59, 240, 294, 335
DraI TTTAAA 1 cut(s) 379
DriI GACNNNNNGTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 205
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 78, 207
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 2 cut(s) 57, 103
FauI CCCGC 2 cut(s) 10, 338
FblI GTMKAC 2 cut(s) 183, 285
Fnu4HI GCNGC 4 cut(s) 15, 33, 65, 137
Fsp4HI GCNGC 4 cut(s) 15, 33, 65, 137
GlaI GCGC 1 cut(s) 104
GluI GCNGC 4 cut(s) 15, 33, 65, 137
GsaI CCCAGC 1 cut(s) 321
HaeIII GGCC 1 cut(s) 315
HapII CCGG 3 cut(s) 9, 202, 290
HgaI GACGC 4 cut(s) 80, 85, 142, 372
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 3 cut(s) 96, 134, 364
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 213
HpaII CCGG 3 cut(s) 9, 202, 290
Hpy166II GTNNAC 2 cut(s) 184, 286
Hpy188I TCNGA 2 cut(s) 310, 340
Hpy188III TCNNGA 1 cut(s) 325
Hpy8I GTNNAC 2 cut(s) 184, 286
Hpy99I CGWCG 8 cut(s) 52, 74, 136, 176, 224, 314, 344, 366
HpyAV CCTTC 2 cut(s) 199, 364
HpyCH4IV ACGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 80, 102, 167
HpyF3I CTNAG 2 cut(s) 54, 279
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 3 cut(s) 96, 134, 364
HspAI GCGC 1 cut(s) 103
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 4 cut(s) 59, 240, 294, 335
LmnI GCTCC 1 cut(s) 11
LweI GCATC 1 cut(s) 204
MaeII ACGT 1 cut(s) 219
MalI GATC 4 cut(s) 61, 242, 296, 337
MbiI CCGCTC 2 cut(s) 14, 67
MboI GATC 4 cut(s) 59, 240, 294, 335
MflI RGATCY 3 cut(s) 240, 294, 335
MluCI AATT 1 cut(s) 380
MmeI TCCRAC 2 cut(s) 333, 363
MnlI CCTC 8 cut(s) 152, 155, 176, 257, 260, 288, 332, 377
MseI TTAA 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 153, 333
MspI CCGG 3 cut(s) 9, 202, 290
MspR9I CCNGG 4 cut(s) 80, 203, 209, 290
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 80, 209
MvnI CGCG 2 cut(s) 103, 333
MwoI GCNNNNNNNGC 4 cut(s) 38, 80, 102, 167
NciI CCSGG 2 cut(s) 203, 290
NdeII GATC 4 cut(s) 59, 240, 294, 335
NlaIV GGNNCC 3 cut(s) 206, 316, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 213
Pfl23II CGTACG 1 cut(s) 228
PkrI GCNGC 4 cut(s) 16, 34, 66, 138
Psp6I CCWGG 2 cut(s) 78, 207
PspFI CCCAGC 1 cut(s) 317
PspGI CCWGG 2 cut(s) 78, 207
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 206, 316, 337
PspPI GGNCC 2 cut(s) 205, 314
PsuI RGATCY 3 cut(s) 240, 294, 335
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SacII CCGCGG 1 cut(s) 334
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 4 cut(s) 15, 33, 65, 137
Sau3AI GATC 4 cut(s) 59, 240, 294, 335
Sau96I GGNCC 2 cut(s) 205, 314
ScrFI CCNGG 4 cut(s) 80, 203, 209, 290
SetI ASST 6 cut(s) 92, 144, 222, 249, 285, 306
SfaNI GCATC 1 cut(s) 204
Sfr303I CCGCGG 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 334
SinI GGWCC 1 cut(s) 205
Sse9I AATT 1 cut(s) 380
StyD4I CCNGG 4 cut(s) 78, 201, 207, 288
StyI CCWWGG 1 cut(s) 177
TaiI ACGT 1 cut(s) 222
TaqI TCGA 4 cut(s) 69, 123, 285, 361
TasI AATT 1 cut(s) 380
TauI GCSGC 4 cut(s) 17, 35, 67, 139
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 380
XmiI GTMKAC 2 cut(s) 183, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.