Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Reverse (-)

10041820 .. 10043840

Gene Structure 2021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCACGGCGCATGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGTGTAACCGCCTTAGACCTAGCTGCTTCCGGTATAGACACAACCAGGTCAATCACTGACATTTCTACATGTGAACAATATTCTGAGCCATTGATGCAGCTAATGACTTCATTGCCGAATGATGAGAAGGTTGTACTCGTTGGTCATAGCTTTGGAGGTTTGAGTTTAGCCTTAGCCATGGATAAGTTTCCCGATAAAATCTCTGTCTCTGTCTTCGTGACTGCATTCATGCCCGACACCAAACACTCACCATCGTTCGTCGAGGAAAAGTTTGCAAGCAGCATGACACCAGAAGGATGGATGGGCTCTGAGCTCGAGACATATGGTTCAGATAATTCCGGCTTGTCTGTGTTCTTCAGCACCGACTTCATGAAGCACCGTCTCTACCAACTTTCTCCTGTGGAGGATCTTGAGCTTGGATTGCTTCTAAAGAGGCCTAGTTCATTGTTTATTAATGAATTATCGAAGATGGAGAACTTTTCTGAGAAAGGGTATGGATCTGTTCCTCGAGCTTACATTGTGTGCAAAGAGGACAACATTATCTCGGAAGACCATCAACGATGGATGATCCATAATTATCCGGCGAATTTAGTGATTGAGATGGAAGAGACTGATCATATGCCAATGTTTTGCAAACCTCAACTACTAAGTGACCATCTATTGGCAATCGCTGACAATTTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

263

Amino Acids

29.67

Weight (kDa)

5.17

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	20 - 151	5.6e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	24 - 137	2.2e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	25 - 135	7.8e-16	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	766
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	3 cut(s)	519, 610, 667
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	1 cut(s)	445
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	3 cut(s)	39, 71, 240
AfiI	CCNNNNNNNGG	1 cut(s)	766
AflIII	ACRYGT	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	6 cut(s)	128, 205, 255, 418, 520, 617
AluI	AGCT	6 cut(s)	128, 205, 255, 418, 520, 617
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	4 cut(s)	316, 416, 491, 707
AlwI	GGATC	3 cut(s)	519, 610, 667
Ama87I	CYCGRG	3 cut(s)	89, 419, 612
AoxI	GGCC	2 cut(s)	100, 539
ApeKI	GCWGC	3 cut(s)	128, 202, 384
ApoI	RAATTY	1 cut(s)	691
AseI	ATTAAT	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	345
AvaI	CYCGRG	3 cut(s)	89, 419, 612
BanII	GRGCYC	2 cut(s)	413, 420
BbsI	GAAGAC	2 cut(s)	310, 660
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	115, 214, 396
BccI	CCATC	9 cut(s)	111, 364, 396, 400, 568, 660, 666, 700, 768
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	4 cut(s)	316, 416, 491, 707
BfaI	CTAG	3 cut(s)	35, 125, 543
BisI	GCNGC	3 cut(s)	129, 203, 385
BlsI	GCNGC	3 cut(s)	130, 204, 386
Bme1390I	CCNGG	1 cut(s)	151
BmeT110I	CYCGRG	3 cut(s)	89, 419, 612
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	2 cut(s)	310, 660
Bpu10I	CCTNAGC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	52, 282
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse3DI	GCAATG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	52, 282
BseGI	GGATG	3 cut(s)	407, 411, 675
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	3 cut(s)	180, 405, 579
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	115, 214, 396
BshFI	GGCC	2 cut(s)	102, 541
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	3 cut(s)	89, 419, 612
BsiSI	CCGG	3 cut(s)	135, 444, 686
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	4 cut(s)	316, 416, 491, 707
BsmBI	CGTCTC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	102, 541
BsoBI	CYCGRG	3 cut(s)	89, 419, 612
Bsp1286I	GDGCHC	2 cut(s)	413, 420
Bsp143I	GATC	4 cut(s)	511, 602, 672, 718
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	102, 541
BspCNI	CTCAG	3 cut(s)	181, 406, 580
BspHI	TCATGA	1 cut(s)	474
BspPI	GGATC	3 cut(s)	519, 610, 667
BsrDI	GCAATG	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	52, 282
BssMI	GATC	4 cut(s)	511, 602, 672, 718
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	3 cut(s)	8, 90, 705
BstC8I	GCNNGC	2 cut(s)	49, 382
BstDEI	CTNAG	6 cut(s)	118, 189, 277, 414, 588, 752
BstDSI	CCRYGG	2 cut(s)	52, 282
BstF5I	GGATG	3 cut(s)	407, 411, 675
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	4 cut(s)	514, 605, 675, 721
BstMAI	GTCTC	4 cut(s)	316, 416, 491, 707
BstMBI	GATC	4 cut(s)	511, 602, 672, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 199, 526
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	115, 214, 396
BstV2I	GAAGAC	2 cut(s)	310, 660
BstX2I	RGATCY	2 cut(s)	511, 602
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	2 cut(s)	511, 602
BsuRI	GGCC	2 cut(s)	102, 541
BtgI	CCRYGG	2 cut(s)	52, 282
BtsCI	GGATG	3 cut(s)	407, 411, 675
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	49, 382
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	38, 70, 239
CviAII	CATG	7 cut(s)	41, 60, 174, 283, 334, 388, 475
CviQI	GTAC	3 cut(s)	38, 70, 239
DdeI	CTNAG	6 cut(s)	118, 189, 277, 414, 588, 752
DpnI	GATC	4 cut(s)	513, 604, 674, 720
DpnII	GATC	4 cut(s)	511, 602, 672, 718
DraIII	CACNNNGTG	1 cut(s)	31
Eam1104I	CTCTTC	3 cut(s)	8, 90, 705
EarI	CTCTTC	3 cut(s)	8, 90, 705
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	2 cut(s)	413, 420
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	445
Eco88I	CYCGRG	3 cut(s)	89, 419, 612
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	413, 420
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	7 cut(s)	44, 63, 177, 286, 337, 391, 478
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	7 cut(s)	40, 59, 173, 282, 333, 387, 474
FauNDI	CATATG	2 cut(s)	427, 723
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	3 cut(s)	129, 203, 385
FokI	GGATG	3 cut(s)	414, 418, 682
FriOI	GRGCYC	2 cut(s)	413, 420
Fsp4HI	GCNGC	3 cut(s)	129, 203, 385
FspBI	CTAG	3 cut(s)	35, 125, 543
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	3 cut(s)	129, 203, 385
HaeIII	GGCC	2 cut(s)	102, 541
HapII	CCGG	3 cut(s)	135, 444, 686
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	7 cut(s)	44, 63, 177, 286, 337, 391, 478
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HpaII	CCGG	3 cut(s)	135, 444, 686
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	5 cut(s)	190, 415, 436, 589, 652
Hpy188III	TCNNGA	6 cut(s)	89, 296, 322, 421, 475, 515
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	226, 392
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	5 cut(s)	202, 329, 380, 630, 738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 199, 526
HpyF3I	CTNAG	6 cut(s)	118, 189, 277, 414, 588, 752
Hsp92II	CATG	7 cut(s)	44, 63, 177, 286, 337, 391, 478
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	4 cut(s)	511, 602, 672, 718
LpnPI	CCDG	8 cut(s)	52, 136, 148, 163, 408, 457, 516, 699
Lsp1109I	GCAGC	3 cut(s)	115, 214, 396
LweI	GCATC	1 cut(s)	189
MabI	ACCWGGT	1 cut(s)	149
MaeI	CTAG	3 cut(s)	35, 125, 543
MaeIII	GTNAC	3 cut(s)	109, 322, 755
MalI	GATC	4 cut(s)	513, 604, 674, 720
MboI	GATC	4 cut(s)	511, 602, 672, 718
MboII	GAAGA	7 cut(s)	25, 77, 310, 451, 583, 665, 722
MflI	RGATCY	2 cut(s)	511, 602
MhlI	GDGCHC	2 cut(s)	413, 420
MluCI	AATT	5 cut(s)	439, 563, 679, 691, 781
MseI	TTAA	3 cut(s)	78, 558, 790
MspI	CCGG	3 cut(s)	135, 444, 686
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	63, 199, 526
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	2 cut(s)	427, 723
NdeII	GATC	4 cut(s)	511, 602, 672, 718
NlaIII	CATG	7 cut(s)	44, 63, 177, 286, 337, 391, 478
NmuCI	GTSAC	2 cut(s)	322, 755
NspI	RCATGY	1 cut(s)	177
PaeR7I	CTCGAG	3 cut(s)	89, 419, 612
PagI	TCATGA	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	541
PciI	ACATGT	1 cut(s)	173
PctI	GAATGC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	766
PkrI	GCNGC	3 cut(s)	130, 204, 386
PscI	ACATGT	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	511, 602
RsaI	GTAC	3 cut(s)	39, 71, 240
RsaNI	GTAC	3 cut(s)	38, 70, 239
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	78, 558, 790
SatI	GCNGC	3 cut(s)	129, 203, 385
Sau3AI	GATC	4 cut(s)	511, 602, 672, 718
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	413, 420
SexAI	ACCWGGT	1 cut(s)	149
SfaNI	GCATC	1 cut(s)	189
Sfr274I	CTCGAG	3 cut(s)	89, 419, 612
SlaI	CTCGAG	3 cut(s)	89, 419, 612
SmlI	CTYRAG	4 cut(s)	89, 419, 515, 612
SmoI	CTYRAG	4 cut(s)	89, 419, 515, 612
Sse9I	AATT	5 cut(s)	439, 563, 679, 691, 781
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	1 cut(s)	114
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	3 cut(s)	35, 125, 543
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	5 cut(s)	90, 366, 420, 569, 613
TasI	AATT	5 cut(s)	439, 563, 679, 691, 781
TatI	WGTACW	2 cut(s)	37, 238
Tru1I	TTAA	3 cut(s)	78, 558, 790
Tru9I	TTAA	3 cut(s)	78, 558, 790
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	2 cut(s)	322, 755
TseI	GCWGC	3 cut(s)	128, 202, 384
Tsp45I	GTSAC	2 cut(s)	322, 755
TspDTI	ATGAA	6 cut(s)	204, 322, 463, 491, 537, 576
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	766
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	177
XhoI	CTCGAG	3 cut(s)	89, 419, 612
XspI	CTAG	3 cut(s)	35, 125, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.