Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000112.1

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Reverse (-)

114731 .. 116351

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000112.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ctggagtccgccggtcacaaggtcacggccctcaataatgccgcttcaggcatcgacaccaagtccctagaagatgttcattcactagaagagtactctgagcctttgcttcagtttatcggatcacttggtccacaagaaaaggtgatccttgtaggtcacagccttgggggcatgaacttggctcttgccatggagaagttccctgagaaaatttctgctgctgttttcctggctgctttactgccagataccacacactacccatggtatattgtagatcagttaatgcaacaattaccattagacagatggttggacacccagtttggacagtttggagaagaaccctttgcttcatttcatttcggtcccaagttcttggcaacaagtctctatcaactcagccccattgaggttggttcttacttatggtatgtcttattcaagttttctgaactgttgcaattacattttgcatgttccaaggatattgaactcgccaagagtctagtaaggaagagttccttctttcgtgaacaagtgtgtaagatgaagaacttctcaaatgagggttatggatcggttacaagagtttatgcagtttgtgagaaggacaaggtaataaccaaggaatttcagcattggatgattcaaaatagtggggttaaagatgtggtggagatcaagggagttgatcatatgccaatgttttcaaagccacaagaactttccaattctcttctagagatagcacagaagtacacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

256

Amino Acids

28.95

Weight (kDa)

5.63

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 42
AclWI	GGATC	3 cut(s)	130, 142, 589
AcsI	RAATTY	2 cut(s)	213, 635
AcuI	CTGAAG	2 cut(s)	30, 95
AfaI	GTAC	2 cut(s)	95, 764
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	448, 497, 656, 717
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	130, 142, 589
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	221, 236
ApoI	RAATTY	2 cut(s)	213, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	2 cut(s)	75, 560
AspS9I	GGNCC	3 cut(s)	28, 131, 371
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	131, 371
BbvI	GCAGC	2 cut(s)	208, 223
BccI	CCATC	1 cut(s)	306
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	4 cut(s)	68, 86, 512, 746
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	42, 222, 237
BlsI	GCNGC	3 cut(s)	43, 223, 238
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	131, 371
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	28, 131, 371
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	23
BsaJI	CCNNGG	5 cut(s)	166, 192, 266, 486, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	5 cut(s)	166, 192, 266, 486, 630
BseGI	GGATG	1 cut(s)	654
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	90, 198, 418
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	208, 223
BshFI	GGCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	49, 357
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	49, 357
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
Bsp19I	CCATGG	2 cut(s)	192, 266
BspACI	CCGC	2 cut(s)	9, 42
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	3 cut(s)	91, 199, 417
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	3 cut(s)	130, 142, 589
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	5 cut(s)	166, 192, 266, 486, 630
BssMI	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
BssT1I	CCWWGG	5 cut(s)	166, 192, 266, 486, 630
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	336, 462
Bst6I	CTCTTC	3 cut(s)	84, 515, 747
BstDEI	CTNAG	3 cut(s)	99, 207, 404
BstDSI	CCRYGG	2 cut(s)	192, 266
BstF5I	GGATG	1 cut(s)	654
BstKTI	GATC	6 cut(s)	125, 150, 283, 584, 687, 700
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	208, 223
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	2 cut(s)	192, 266
BtsCI	GGATG	1 cut(s)	654
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	28, 131, 371
Csp6I	GTAC	2 cut(s)	94, 763
CviAII	CATG	4 cut(s)	175, 193, 267, 480
CviJI	RGCY	7 cut(s)	29, 103, 165, 185, 236, 408, 721
CviKI_1	RGCY	7 cut(s)	29, 103, 165, 185, 236, 408, 721
CviQI	GTAC	2 cut(s)	94, 763
DdeI	CTNAG	3 cut(s)	99, 207, 404
DpnI	GATC	6 cut(s)	124, 149, 282, 583, 686, 699
DpnII	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	84, 515, 747
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	84, 515, 747
Eco130I	CCWWGG	5 cut(s)	166, 192, 266, 486, 630
Eco47I	GGWCC	2 cut(s)	131, 371
Eco57I	CTGAAG	2 cut(s)	30, 95
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	5 cut(s)	166, 192, 266, 486, 630
ErhI	CCWWGG	5 cut(s)	166, 192, 266, 486, 630
FaeI	CATG	4 cut(s)	178, 196, 270, 483
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	49, 357
FatI	CATG	4 cut(s)	174, 192, 266, 479
FauNDI	CATATG	1 cut(s)	702
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	42, 222, 237
FokI	GGATG	1 cut(s)	661
Fsp4HI	GCNGC	3 cut(s)	42, 222, 237
FspBI	CTAG	4 cut(s)	68, 86, 512, 746
GluI	GCNGC	3 cut(s)	42, 222, 237
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	4 cut(s)	178, 196, 270, 483
HinfI	GANTC	3 cut(s)	5, 508, 652
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	134, 539, 765
Hpy188I	TCNGA	3 cut(s)	100, 122, 457
Hpy188III	TCNNGA	2 cut(s)	536, 746
Hpy8I	GTNNAC	3 cut(s)	134, 539, 765
HpyAV	CCTTC	2 cut(s)	538, 607
HpyCH4III	ACNGT	2 cut(s)	336, 462
HpyCH4V	TGCA	4 cut(s)	292, 466, 479, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	3 cut(s)	99, 207, 404
Hsp92II	CATG	4 cut(s)	178, 196, 270, 483
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
LpnPI	CCDG	7 cut(s)	25, 33, 218, 219, 245, 261, 338
Lsp1109I	GCAGC	2 cut(s)	208, 223
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	4 cut(s)	68, 86, 512, 746
MaeIII	GTNAC	4 cut(s)	14, 22, 158, 586
MalI	GATC	6 cut(s)	124, 149, 282, 583, 686, 699
MboI	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
MboII	GAAGA	6 cut(s)	83, 101, 356, 532, 568, 734
MluCI	AATT	5 cut(s)	213, 296, 467, 635, 736
MlyI	GAGTC	2 cut(s)	14, 517
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	41, 409, 565
MroXI	GAANNNNTTC	2 cut(s)	75, 560
MseI	TTAA	3 cut(s)	287, 669, 769
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	171
NcoI	CCATGG	2 cut(s)	192, 266
NdeI	CATATG	1 cut(s)	702
NdeII	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
NlaIII	CATG	4 cut(s)	178, 196, 270, 483
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	3 cut(s)	14, 22, 158
NspI	RCATGY	1 cut(s)	483
PdmI	GAANNNNTTC	2 cut(s)	75, 560
PfeI	GAWTC	1 cut(s)	652
PkrI	GCNGC	3 cut(s)	43, 223, 238
PleI	GAGTC	2 cut(s)	13, 516
PpsI	GAGTC	2 cut(s)	13, 516
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	3 cut(s)	28, 131, 371
RsaI	GTAC	2 cut(s)	95, 764
RsaNI	GTAC	2 cut(s)	94, 763
SaqAI	TTAA	3 cut(s)	287, 669, 769
SatI	GCNGC	3 cut(s)	42, 222, 237
Sau3AI	GATC	6 cut(s)	122, 147, 280, 581, 684, 697
Sau96I	GGNCC	3 cut(s)	28, 131, 371
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	14, 517
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	5 cut(s)	24, 147, 160, 420, 624
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	131, 371
Sse9I	AATT	5 cut(s)	213, 296, 467, 635, 736
SsiI	CCGC	2 cut(s)	9, 42
SspMI	CTAG	4 cut(s)	68, 86, 512, 746
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	5 cut(s)	166, 192, 266, 486, 630
TaaI	ACNGT	2 cut(s)	336, 462
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	5 cut(s)	213, 296, 467, 635, 736
TatI	WGTACW	2 cut(s)	93, 762
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	3 cut(s)	287, 669, 769
Tru9I	TTAA	3 cut(s)	287, 669, 769
TseFI	GTSAC	3 cut(s)	14, 22, 158
TseI	GCWGC	2 cut(s)	221, 236
Tsp45I	GTSAC	3 cut(s)	14, 22, 158
TspDTI	ATGAA	5 cut(s)	68, 191, 348, 353, 569
VpaK11BI	GGWCC	2 cut(s)	131, 371
XapI	RAATTY	2 cut(s)	213, 635
XbaI	TCTAGA	1 cut(s)	745
XceI	RCATGY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XmnI	GAANNNNTTC	2 cut(s)	75, 560
XspI	CTAG	4 cut(s)	68, 86, 512, 746
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.