Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

18000272 .. 18002251

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAGCTGCACCAAAAGAAGAGAAACATTTTGTTCTAGTTCATGGGGCGTGCCATGGCGCTTGGTGCTGGTACAAGCTCAAACCGAAGCTCGAGTCCGCCGGTCACAAGGTCACAGCGCTGGACCTTGCAGCTTCCGGCGTGGACGCAAGGGCCATCGCAGATGTTCACTCATTGGCAGAGTACTCCGAGCCTTTGTTGCACTTCATCGAATCACTCGGTCCGAAAGAGGAGGTGATTCTTGTAGGTCATAGCCTTGGAGGCATGAACTTGGCCCTTGCCATGGAAAGGTTCCCGCACAAAATTACTGCTGCTGTTTTCTTAACTGCCTTTCTGCCAGATACCATTCACCAGCCTTCATATGTTTTGAATCAGTTCACGCAAAAGATGCCCGCGGAAGCATGGTTGGACACCCGGTTTGCAAATTACGGAAGTGCCAAAGAACCTTTAACATCAATGCATTTTGGTCCAATGTTCTTAACGAGGCTCTATGAACTCAGTCCCATTGAGGATCTGGAACTTGCCAAATGCTTAGCGAGGACAAGTTCACTATTTCTTGAAGACTCGTCAAAGATGAAGAATTTCTCGAACGAAGGATTTGGGTCGGTCACTCGAGTTTACATGGTCTGTAACGAAGATAAAGCAATACCAGCTGAATTTCAACGGTGGATGATCGAAAACAGTGGTGTTACAAATGTGGTGGAGATTAAGGGTGCTGATCATATGCCAATGTTTTCCAAGCCCCAAGAACTTTGCAATTCTCTGTTGGAGATAGGAAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

262

Amino Acids

29.0

Weight (kDa)

5.88

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	395
AciI	CCGC	4 cut(s)	99, 296, 393, 395
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	580, 656
AfaI	GTAC	2 cut(s)	74, 185
AfeI	AGCGCT	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	283, 288
AgsI	TTSAA	3 cut(s)	370, 560, 662
AluBI	AGCT	5 cut(s)	8, 79, 91, 134, 653
AluI	AGCT	5 cut(s)	8, 79, 91, 134, 653
AlwI	GGATC	1 cut(s)	519
Ama87I	CYCGRG	2 cut(s)	92, 612
Aor51HI	AGCGCT	1 cut(s)	120
AoxI	GGCC	2 cut(s)	153, 273
ApeKI	GCWGC	4 cut(s)	5, 8, 131, 311
ApoI	RAATTY	2 cut(s)	580, 656
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 401, 433
Asp700I	GAANNNNTTC	2 cut(s)	374, 581
AspLEI	GCGC	2 cut(s)	62, 121
AspS9I	GGNCC	5 cut(s)	124, 153, 221, 274, 467
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	247, 341
AvaI	CYCGRG	2 cut(s)	92, 612
AvaII	GGWCC	3 cut(s)	124, 221, 467
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	3 cut(s)	17, 143, 298
BccI	CCATC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	415
BfaI	CTAG	1 cut(s)	38
BfoI	RGCGCY	2 cut(s)	63, 122
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	4 cut(s)	6, 9, 132, 312
BlpI	GCTNAGC	1 cut(s)	532
BlsI	GCNGC	4 cut(s)	7, 10, 133, 313
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	3 cut(s)	124, 221, 467
BmeT110I	CYCGRG	2 cut(s)	92, 612
BmgT120I	GGNCC	5 cut(s)	124, 153, 221, 274, 467
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	4 cut(s)	55, 256, 282, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 288
Bse118I	RCCGGY	1 cut(s)	101
BseDI	CCNNGG	4 cut(s)	55, 256, 282, 393
BseGI	GGATG	1 cut(s)	675
BseLI	CCNNNNNNNGG	2 cut(s)	283, 288
BseMII	CTCAG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	17, 143, 298
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	155, 275
BsiHKCI	CYCGRG	2 cut(s)	92, 612
BsiSI	CCGG	3 cut(s)	102, 138, 415
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	283, 288
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	155, 275
BsoBI	CYCGRG	2 cut(s)	92, 612
Bsp143I	GATC	3 cut(s)	511, 672, 718
Bsp1720I	GCTNAGC	1 cut(s)	532
Bsp19I	CCATGG	2 cut(s)	55, 282
BspACI	CCGC	4 cut(s)	99, 296, 393, 395
BspANI	GGCC	2 cut(s)	155, 275
BspCNI	CTCAG	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	4 cut(s)	55, 256, 282, 393
BssMI	GATC	3 cut(s)	511, 672, 718
BssT1I	CCWWGG	3 cut(s)	55, 256, 282
Bst4CI	ACNGT	2 cut(s)	666, 683
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	52, 393
BstDEI	CTNAG	2 cut(s)	497, 532
BstDSI	CCRYGG	3 cut(s)	55, 282, 393
BstF5I	GGATG	1 cut(s)	675
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	2 cut(s)	63, 122
BstHHI	GCGC	2 cut(s)	62, 121
BstKTI	GATC	3 cut(s)	514, 675, 721
BstMBI	GATC	3 cut(s)	511, 672, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 199, 261, 388, 650
BstSCI	CCNGG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	3 cut(s)	17, 143, 298
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	155, 275
BtgI	CCRYGG	3 cut(s)	55, 282, 393
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	675
BtsIMutI	CAGTG	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	52, 393
CfoI	GCGC	2 cut(s)	62, 121
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	5 cut(s)	124, 153, 221, 274, 467
Cfr42I	CCGCGG	1 cut(s)	396
CpoI	CGGWCCG	1 cut(s)	221
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	73, 184
CspCI	CAANNNNNGTGG	2 cut(s)	681, 716
CspI	CGGWCCG	1 cut(s)	221
CviAII	CATG	6 cut(s)	44, 56, 265, 283, 402, 622
CviQI	GTAC	2 cut(s)	73, 184
DdeI	CTNAG	2 cut(s)	497, 532
DpnI	GATC	3 cut(s)	513, 674, 720
DpnII	GATC	3 cut(s)	511, 672, 718
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	3 cut(s)	55, 256, 282
Eco47I	GGWCC	3 cut(s)	124, 221, 467
Eco47III	AGCGCT	1 cut(s)	120
Eco88I	CYCGRG	2 cut(s)	92, 612
EcoT14I	CCWWGG	3 cut(s)	55, 256, 282
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	3 cut(s)	55, 256, 282
FaeI	CATG	6 cut(s)	47, 59, 268, 286, 405, 625
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	6 cut(s)	43, 55, 264, 282, 401, 621
FauI	CCCGC	2 cut(s)	303, 400
FauNDI	CATATG	2 cut(s)	361, 723
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	4 cut(s)	6, 9, 132, 312
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	4 cut(s)	6, 9, 132, 312
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	2 cut(s)	61, 120
GluI	GCNGC	4 cut(s)	6, 9, 132, 312
HaeII	RGCGCY	2 cut(s)	63, 122
HaeIII	GGCC	2 cut(s)	155, 275
HapII	CCGG	3 cut(s)	102, 138, 415
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	62, 121
Hin1II	CATG	6 cut(s)	47, 59, 268, 286, 405, 625
Hin6I	GCGC	2 cut(s)	60, 119
HinP1I	GCGC	2 cut(s)	60, 119
HinfI	GANTC	5 cut(s)	95, 212, 238, 370, 563
HpaII	CCGG	3 cut(s)	102, 138, 415
HphI	GGTGA	2 cut(s)	247, 341
Hpy166II	GTNNAC	5 cut(s)	145, 169, 378, 548, 619
Hpy188I	TCNGA	2 cut(s)	190, 225
Hpy188III	TCNNGA	3 cut(s)	515, 557, 586
Hpy8I	GTNNAC	5 cut(s)	145, 169, 378, 548, 619
HpyAV	CCTTC	2 cut(s)	366, 587
HpyCH4III	ACNGT	2 cut(s)	666, 683
HpyCH4V	TGCA	6 cut(s)	11, 131, 202, 422, 460, 756
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 199, 261, 388, 650
HpyF3I	CTNAG	2 cut(s)	497, 532
Hsp92II	CATG	6 cut(s)	47, 59, 268, 286, 405, 625
HspAI	GCGC	2 cut(s)	60, 119
Ksp22I	TGATCA	1 cut(s)	718
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	511, 672, 718
LpnPI	CCDG	9 cut(s)	55, 107, 115, 151, 351, 365, 428, 500, 663
Lsp1109I	GCAGC	3 cut(s)	17, 143, 298
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	5 cut(s)	104, 112, 607, 629, 688
MalI	GATC	3 cut(s)	513, 674, 720
MboI	GATC	3 cut(s)	511, 672, 718
MboII	GAAGA	4 cut(s)	32, 572, 589, 647
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	5 cut(s)	303, 424, 580, 656, 757
MlyI	GAGTC	2 cut(s)	104, 557
MmeI	TCCRAC	2 cut(s)	387, 747
MnlI	CCTC	6 cut(s)	223, 226, 254, 477, 502, 531
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	2 cut(s)	374, 581
MseI	TTAA	4 cut(s)	323, 449, 479, 708
MspA1I	CMGCKG	3 cut(s)	8, 395, 653
MspI	CCGG	3 cut(s)	102, 138, 415
MspR9I	CCNGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	66, 199, 261, 388, 650
NciI	CCSGG	1 cut(s)	415
NcoI	CCATGG	2 cut(s)	55, 282
NdeI	CATATG	2 cut(s)	361, 723
NdeII	GATC	3 cut(s)	511, 672, 718
NlaIII	CATG	6 cut(s)	47, 59, 268, 286, 405, 625
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	3 cut(s)	104, 112, 607
NsiI	ATGCAT	1 cut(s)	462
PaeR7I	CTCGAG	2 cut(s)	92, 612
PdmI	GAANNNNTTC	2 cut(s)	374, 581
PfeI	GAWTC	3 cut(s)	212, 238, 370
PkrI	GCNGC	4 cut(s)	7, 10, 133, 313
PleI	GAGTC	2 cut(s)	103, 557
PpsI	GAGTC	2 cut(s)	103, 557
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	5 cut(s)	124, 153, 221, 274, 467
PspXI	VCTCGAGB	2 cut(s)	92, 612
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	2 cut(s)	8, 653
RsaI	GTAC	2 cut(s)	74, 185
RsaNI	GTAC	2 cut(s)	73, 184
Rsr2I	CGGWCCG	1 cut(s)	221
RsrII	CGGWCCG	1 cut(s)	221
SacII	CCGCGG	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	323, 449, 479, 708
SatI	GCNGC	4 cut(s)	6, 9, 132, 312
Sau3AI	GATC	3 cut(s)	511, 672, 718
Sau96I	GGNCC	5 cut(s)	124, 153, 221, 274, 467
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	2 cut(s)	104, 557
ScrFI	CCNGG	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	378
Sfr274I	CTCGAG	2 cut(s)	92, 612
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	3 cut(s)	124, 221, 467
SlaI	CTCGAG	2 cut(s)	92, 612
SmlI	CTYRAG	2 cut(s)	92, 612
SmoI	CTYRAG	2 cut(s)	92, 612
Sse9I	AATT	5 cut(s)	303, 424, 580, 656, 757
SsiI	CCGC	4 cut(s)	99, 296, 393, 395
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	3 cut(s)	55, 256, 282
TaaI	ACNGT	2 cut(s)	666, 683
TaqI	TCGA	5 cut(s)	93, 210, 587, 613, 675
TaqII	GACCGA	2 cut(s)	209, 595
TasI	AATT	5 cut(s)	303, 424, 580, 656, 757
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	212, 238, 370
Tru1I	TTAA	4 cut(s)	323, 449, 479, 708
Tru9I	TTAA	4 cut(s)	323, 449, 479, 708
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	3 cut(s)	104, 112, 607
TseI	GCWGC	4 cut(s)	5, 8, 131, 311
Tsp45I	GTSAC	3 cut(s)	104, 112, 607
TspDTI	ATGAA	6 cut(s)	32, 196, 281, 348, 507, 590
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	1 cut(s)	688
VpaK11BI	GGWCC	3 cut(s)	124, 221, 467
XapI	RAATTY	2 cut(s)	580, 656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XhoI	CTCGAG	2 cut(s)	92, 612
XmnI	GAANNNNTTC	2 cut(s)	374, 581
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.