Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000112.1

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Reverse (-)

59194 .. 60788

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000112.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgtcagcatccaacacacagaagcactttgttctagtccatggtgcaggccatggagcttggtgttggtacaaaatcaagccaaggctggagtccgccggtcacaaggtcacggccctcaataatgccgcttcaggcatcgacaccaagtccctagaagatgttcattcactagaagagtactctgagcctttgcttcagtttatcggatcacttggtccacaagaaaaggtgatccttgtaggtcacagccttgggggcatgaacttggctgttgccatggagaagttccctgcgaaaatttctgctgctgttttcctgactgctttactgccagataccacacaccacccatggtatattgtagatcaggatattgaactcgccaagagtctagtaaggaagagttccttctttcgtgaacaagtgtgtaagacgaagaacttctcaaatgagggttatggatcggttacaagagtttatgcagtttgtgagaaggacatggtaataaccaaggaatttcagcattggatgattcaaaatagtggggttaaagatgtggtggagatcaagggagctgatcatatgccaatgttttcaaagccacaagaactttccaattctcttctagagatagcacagaagtacacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

217

Amino Acids

24.15

Weight (kDa)

6.79

Isoelectric Point (pI)

23.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 129
AclWI	GGATC	3 cut(s)	217, 229, 472
AcsI	RAATTY	2 cut(s)	300, 518
AcuI	CTGAAG	2 cut(s)	117, 182
AfaI	GTAC	3 cut(s)	71, 182, 647
AgsI	TTSAA	3 cut(s)	380, 539, 600
AhdI	GACNNNNNGTC	1 cut(s)	148
AluBI	AGCT	2 cut(s)	59, 578
AluI	AGCT	2 cut(s)	59, 578
AlwI	GGATC	3 cut(s)	217, 229, 472
AoxI	GGCC	2 cut(s)	49, 114
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	2 cut(s)	300, 518
Asp700I	GAANNNNTTC	2 cut(s)	162, 443
AspS9I	GGNCC	2 cut(s)	115, 218
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	129
BclI	TGATCA	1 cut(s)	580
BfaI	CTAG	5 cut(s)	35, 155, 173, 395, 629
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	2 cut(s)	129, 309
BlsI	GCNGC	2 cut(s)	130, 310
BmcAI	AGTACT	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	218
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	115, 218
BmsI	GCATC	2 cut(s)	17, 147
BpmI	CTGGAG	1 cut(s)	110
BsaJI	CCNNGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
Bse118I	RCCGGY	1 cut(s)	98
BseDI	CCNNGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
BseGI	GGATG	2 cut(s)	8, 537
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	51, 116
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	51, 116
Bsp143I	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
Bsp19I	CCATGG	4 cut(s)	40, 52, 279, 353
BspACI	CCGC	2 cut(s)	96, 129
BspANI	GGCC	2 cut(s)	51, 116
BspCNI	CTCAG	1 cut(s)	178
BspPI	GGATC	3 cut(s)	217, 229, 472
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
BssMI	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
BssT1I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
Bst6I	CTCTTC	3 cut(s)	171, 398, 630
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	4 cut(s)	40, 52, 279, 353
BstF5I	GGATG	2 cut(s)	8, 537
BstKTI	GATC	6 cut(s)	212, 237, 370, 467, 570, 583
BstMBI	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	51, 116
BtgI	CCRYGG	4 cut(s)	40, 52, 279, 353
BtsCI	GGATG	2 cut(s)	8, 537
Cac8I	GCNNGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	115, 218
Csp6I	GTAC	3 cut(s)	70, 181, 646
CviAII	CATG	6 cut(s)	41, 53, 262, 280, 354, 502
CviQI	GTAC	3 cut(s)	70, 181, 646
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	6 cut(s)	211, 236, 369, 466, 569, 582
DpnII	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	171, 398, 630
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	3 cut(s)	171, 398, 630
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	117, 182
EcoT14I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
ErhI	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
FaeI	CATG	6 cut(s)	44, 56, 265, 283, 357, 505
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	6 cut(s)	40, 52, 261, 279, 353, 501
FauNDI	CATATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	2 cut(s)	129, 309
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	2 cut(s)	129, 309
FspBI	CTAG	5 cut(s)	35, 155, 173, 395, 629
GluI	GCNGC	2 cut(s)	129, 309
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	51, 116
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	6 cut(s)	44, 56, 265, 283, 357, 505
HinfI	GANTC	3 cut(s)	92, 391, 535
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	221, 422, 648
Hpy188I	TCNGA	2 cut(s)	187, 209
Hpy188III	TCNNGA	4 cut(s)	319, 371, 419, 629
Hpy8I	GTNNAC	3 cut(s)	221, 422, 648
HpyAV	CCTTC	2 cut(s)	421, 490
HpyCH4V	TGCA	2 cut(s)	47, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	6 cut(s)	44, 56, 265, 283, 357, 505
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
LmnI	GCTCC	2 cut(s)	56, 575
LpnPI	CCDG	8 cut(s)	33, 74, 112, 120, 306, 332, 348, 356
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	17, 147
MaeI	CTAG	5 cut(s)	35, 155, 173, 395, 629
MaeIII	GTNAC	4 cut(s)	101, 109, 245, 469
MalI	GATC	6 cut(s)	211, 236, 369, 466, 569, 582
MboI	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
MboII	GAAGA	5 cut(s)	170, 188, 415, 451, 617
MluCI	AATT	3 cut(s)	300, 518, 619
MlyI	GAGTC	2 cut(s)	101, 400
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	128, 448
MroXI	GAANNNNTTC	2 cut(s)	162, 443
MseI	TTAA	2 cut(s)	552, 652
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	4 cut(s)	40, 52, 279, 353
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
NlaIII	CATG	6 cut(s)	44, 56, 265, 283, 357, 505
NmuCI	GTSAC	3 cut(s)	101, 109, 245
PdmI	GAANNNNTTC	2 cut(s)	162, 443
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	2 cut(s)	130, 310
PleI	GAGTC	2 cut(s)	100, 399
PpsI	GAGTC	2 cut(s)	100, 399
PspPI	GGNCC	2 cut(s)	115, 218
RsaI	GTAC	3 cut(s)	71, 182, 647
RsaNI	GTAC	3 cut(s)	70, 181, 646
SaqAI	TTAA	2 cut(s)	552, 652
SatI	GCNGC	2 cut(s)	129, 309
Sau3AI	GATC	6 cut(s)	209, 234, 367, 464, 567, 580
Sau96I	GGNCC	2 cut(s)	115, 218
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	101, 400
SetI	ASST	5 cut(s)	61, 111, 234, 247, 580
SfaNI	GCATC	2 cut(s)	17, 147
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	3 cut(s)	300, 518, 619
SsiI	CCGC	2 cut(s)	96, 129
SspMI	CTAG	5 cut(s)	35, 155, 173, 395, 629
StyI	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 513
TaqI	TCGA	1 cut(s)	141
TasI	AATT	3 cut(s)	300, 518, 619
TatI	WGTACW	2 cut(s)	180, 645
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	552, 652
Tru9I	TTAA	2 cut(s)	552, 652
TseFI	GTSAC	3 cut(s)	101, 109, 245
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	3 cut(s)	101, 109, 245
TspDTI	ATGAA	2 cut(s)	155, 278
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	300, 518
XbaI	TCTAGA	1 cut(s)	628
XmnI	GAANNNNTTC	2 cut(s)	162, 443
XspI	CTAG	5 cut(s)	35, 155, 173, 395, 629
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.