Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

8281544 .. 8284602

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCAGAAACCAACTCACAGAAGCACTTCGTTCTAGTCCATGGCGCAGGCCATGGAGCTTGGTGTTGGTACAAAATCAAGCCAAGGCTCGAGTATGCCGGTCACAAGGTCACGGCCCTGGACAATGCCGGTTCAGGCATCGACACCAAGTCCATAGAAGATTTTCATTCACTAGAAGAGTACTCTGAGCCTCTGCTTCAGTTGATTGGATCACTTGCTCCACAAGAAAAGGTGATCCTTGTAGGTCACAGCCTTGGGGGCATGAACTTGTCTGTTGCCATGGAGAAGTTCCCTGAGAAAATTTCTGCTGCTGTTTTCTTGACTGCTTTTTTGCCAGATACCACACACCACCCTTCGTATGTTGTGGATCAGCTTTTGCAAACAATACCATCAGACGGTTGGTTGGACTCTCAGTTTGAACAGTTTGGAGAAGAACCCTTAACTTCATTCTATTTCGGTCCCAAGTTCTTGTCAACAAAGCTCTATCAACTTAGCCCTATTGAGGATTTCGAACTGGCCAAGACTCTAGTGAGGAAGAGTAGCTTCTTTCGTGAACAAGTGTGTAAGATGAAGAACTTCTCAGATAAGGGATATGGATCGGTTAAAAAAGCTTTTATAGTTTGTGAAAAGGATTTGATAATAACGAAGGAATTTCAGCATTGGATGATACAAAACAGCGCGATTAAAGATGTGGTGGAGATCAAAGGAGCTGATCATATGGCAATGTTTTCAAAGCCAGAAGAACTTTCCTATTCTCTTCTGGAGATAGCACAGAAGTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

262

Amino Acids

29.5

Weight (kDa)

5.81

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	6 - 115	9.4e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	9 - 246	3.5e-23	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	10 - 249	5.4e-22	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	680
AclWI	GGATC	4 cut(s)	217, 229, 375, 604
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	300, 650
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	3 cut(s)	71, 182, 779
AfiI	CCNNNNNNNGG	2 cut(s)	395, 502
AgsI	TTSAA	2 cut(s)	419, 732
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	59, 373, 481, 543, 611, 710
AluI	AGCT	6 cut(s)	59, 373, 481, 543, 611, 710
AlwI	GGATC	4 cut(s)	217, 229, 375, 604
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	3 cut(s)	49, 114, 516
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	2 cut(s)	300, 650
ArsI	GACNNNNNNTTYG	4 cut(s)	313, 345, 398, 430
Asp700I	GAANNNNTTC	3 cut(s)	26, 162, 575
AspLEI	GCGC	2 cut(s)	47, 680
AspS9I	GGNCC	2 cut(s)	115, 458
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	510
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	458
BalI	TGGCCA	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	712
BfaI	CTAG	3 cut(s)	35, 173, 527
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	458
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	115, 458
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	595
BsaJI	CCNNGG	6 cut(s)	40, 52, 83, 117, 253, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 502
Bse118I	RCCGGY	2 cut(s)	98, 128
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	6 cut(s)	40, 52, 83, 117, 253, 279
BseGI	GGATG	1 cut(s)	669
BseJI	GATNNNNATC	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	395, 502
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	4 cut(s)	177, 285, 425, 594
BseNI	ACTGG	1 cut(s)	519
BseXI	GCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	3 cut(s)	51, 116, 518
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	99, 129
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	395, 502
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	51, 116, 518
BsoBI	CYCGRG	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	510
Bsp143I	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
Bsp19I	CCATGG	3 cut(s)	40, 52, 279
BspANI	GGCC	3 cut(s)	51, 116, 518
BspCNI	CTCAG	4 cut(s)	178, 286, 424, 593
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	4 cut(s)	217, 229, 375, 604
BspT104I	TTCGAA	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	2 cut(s)	98, 128
BsrI	ACTGG	1 cut(s)	519
BssAI	RCCGGY	2 cut(s)	98, 128
BssECI	CCNNGG	6 cut(s)	40, 52, 83, 117, 253, 279
BssMI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
BssT1I	CCWWGG	5 cut(s)	40, 52, 83, 253, 279
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	398, 423
Bst6I	CTCTTC	3 cut(s)	171, 530, 762
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	5 cut(s)	186, 294, 411, 491, 580
BstDSI	CCRYGG	3 cut(s)	40, 52, 279
BstF5I	GGATG	1 cut(s)	669
BstFNI	CGCG	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	47, 680
BstKTI	GATC	6 cut(s)	212, 237, 370, 599, 702, 715
BstMBI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	51, 116, 518
BtgI	CCRYGG	3 cut(s)	40, 52, 279
BtsCI	GGATG	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	2 cut(s)	47, 680
Cfr10I	RCCGGY	2 cut(s)	98, 128
Cfr13I	GGNCC	2 cut(s)	115, 458
Csp6I	GTAC	3 cut(s)	70, 181, 778
CviAII	CATG	4 cut(s)	41, 53, 262, 280
CviQI	GTAC	3 cut(s)	70, 181, 778
DdeI	CTNAG	5 cut(s)	186, 294, 411, 491, 580
DpnI	GATC	6 cut(s)	211, 236, 369, 598, 701, 714
DpnII	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
DriI	GACNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	3 cut(s)	171, 530, 762
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	3 cut(s)	171, 530, 762
Eco130I	CCWWGG	5 cut(s)	40, 52, 83, 253, 279
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	5 cut(s)	40, 52, 83, 253, 279
ErhI	CCWWGG	5 cut(s)	40, 52, 83, 253, 279
FaeI	CATG	4 cut(s)	44, 56, 265, 283
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	40, 52, 261, 279
FauNDI	CATATG	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	676
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	35, 173, 527
GlaI	GCGC	2 cut(s)	46, 679
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	3 cut(s)	51, 116, 518
HapII	CCGG	2 cut(s)	99, 129
HhaI	GCGC	2 cut(s)	47, 680
Hin1II	CATG	4 cut(s)	44, 56, 265, 283
Hin6I	GCGC	2 cut(s)	45, 678
HinP1I	GCGC	2 cut(s)	45, 678
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	2 cut(s)	407, 523
HpaII	CCGG	2 cut(s)	99, 129
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	474, 554, 780
Hpy188I	TCNGA	4 cut(s)	7, 187, 394, 583
Hpy188III	TCNNGA	3 cut(s)	319, 551, 761
Hpy8I	GTNNAC	3 cut(s)	474, 554, 780
HpyAV	CCTTC	2 cut(s)	363, 640
HpyCH4III	ACNGT	2 cut(s)	398, 423
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	5 cut(s)	186, 294, 411, 491, 580
Hsp92II	CATG	4 cut(s)	44, 56, 265, 283
HspAI	GCGC	2 cut(s)	45, 678
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
LmnI	GCTCC	3 cut(s)	56, 223, 707
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	3 cut(s)	35, 173, 527
MaeIII	GTNAC	3 cut(s)	101, 109, 245
MalI	GATC	6 cut(s)	211, 236, 369, 598, 701, 714
MboI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
MboII	GAAGA	7 cut(s)	170, 188, 443, 547, 583, 749, 752
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	2 cut(s)	300, 650
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	2 cut(s)	401, 517
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	201, 496, 525
Mox20I	TGGCCA	1 cut(s)	518
MroXI	GAANNNNTTC	3 cut(s)	26, 162, 575
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	4 cut(s)	440, 603, 684, 784
Msp20I	TGGCCA	1 cut(s)	518
MspI	CCGG	2 cut(s)	99, 129
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	3 cut(s)	40, 52, 279
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
NlaIII	CATG	4 cut(s)	44, 56, 265, 283
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	101, 109, 245
NspV	TTCGAA	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	89
PdmI	GAANNNNTTC	3 cut(s)	26, 162, 575
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	401, 517
PpsI	GAGTC	2 cut(s)	401, 517
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	2 cut(s)	115, 458
PspXI	VCTCGAGB	1 cut(s)	89
RsaI	GTAC	3 cut(s)	71, 182, 779
RsaNI	GTAC	3 cut(s)	70, 181, 778
SaqAI	TTAA	4 cut(s)	440, 603, 684, 784
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
Sau96I	GGNCC	2 cut(s)	115, 458
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	401, 517
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	9 cut(s)	61, 111, 234, 247, 375, 483, 545, 613, 712
SfaNI	GCATC	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	510
SinI	GGWCC	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	300, 650
SspMI	CTAG	3 cut(s)	35, 173, 527
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	5 cut(s)	40, 52, 83, 253, 279
TaaI	ACNGT	2 cut(s)	398, 423
TaqI	TCGA	3 cut(s)	90, 141, 510
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	2 cut(s)	300, 650
TatI	WGTACW	2 cut(s)	180, 777
Tru1I	TTAA	4 cut(s)	440, 603, 684, 784
Tru9I	TTAA	4 cut(s)	440, 603, 684, 784
TseFI	GTSAC	3 cut(s)	101, 109, 245
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	3 cut(s)	101, 109, 245
TspDTI	ATGAA	4 cut(s)	155, 278, 435, 584
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	2 cut(s)	300, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XhoI	CTCGAG	1 cut(s)	89
XmnI	GAANNNNTTC	3 cut(s)	26, 162, 575
XspI	CTAG	3 cut(s)	35, 173, 527
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.