Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

15226618 .. 15228695

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTACTTATTGAAGCTCTTAACTATTCAAGGGAGTGAAACTGCTCTACAACCAAGTACAGAGAAAATGTCAGCATCCAACACACAGAAGCACTTTGTTCTAGTCCATGGTGCAGGCCATGGAGCTTGGTGTTGGTACAAAATCAAGCCAAGGCTGGAGTCCGCCGGTCACAAGGTCACGGCCCTCGATAATGCCGCTTCAGGCATCGACACCAAGTCCCTAGAAGATGTTCATTCACTAGAAGAGTACTCTGAGCCTTTGCTTCAGTTTATCGGATCACTTGGTCCACAAGAAAAGGTGATCCTTGTAGGTCACAGCCTTGGGGGCATGAACTTGGCTGTTGCCATGGAGAAGTTCCCTGAGAAAATTTCTGCTGCTGTTTTCCTGGCTGCTTTTCTGCCAGATACCACACACCACCCATGGTATATTGTAGATCAGTTCATGCAAAAATTACCATTAGACAGATGGTTGGACACCCAGTTTGGACAGTTTGGAGAAGAACCCTTTGCTTCATTTCATTTTGGTCCCAAGTTCTTGGCAACAAGTCTCTATCAACTCAGCCCCATTGAGGATATCGAACTCGCCAAGAGTCTATTAAGGAAGAGTTCCTTCTTTCGTGAACAAGTGTGTAAGATGAAGAACTTCTCAAATGAGGGTTATGGATCGGTTACAAGAGTTTATGCAGTTTGTGAGAAGGACATGGTAATAACCAAGGAATTTCAGCATTGGATGATTCAAAATAGTGGGGTTAAAGATGTGGTGGAGATCAAGGGAGCTGATCATATGCCAATGTTTTCAAAGCCACAAGAACTTTCCAATTCTCTTCTAGAGATAGCACAGAAGTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

283

Amino Acids

31.85

Weight (kDa)

6.12

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	28 - 138	8.1e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	31 - 268	1.4e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	32 - 271	3.5e-23	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 195
AclWI	GGATC	3 cut(s)	283, 295, 670
AcsI	RAATTY	2 cut(s)	366, 716
AcuI	CTGAAG	2 cut(s)	183, 248
AfaI	GTAC	5 cut(s)	5, 58, 137, 248, 845
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	13, 29, 737, 798
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	3 cut(s)	16, 125, 776
AluI	AGCT	3 cut(s)	16, 125, 776
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	3 cut(s)	283, 295, 670
AoxI	GGCC	2 cut(s)	115, 180
ApeKI	GCWGC	2 cut(s)	374, 389
ApoI	RAATTY	2 cut(s)	366, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
Asp700I	GAANNNNTTC	2 cut(s)	228, 641
AspS9I	GGNCC	3 cut(s)	181, 284, 524
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	284, 524
BbvI	GCAGC	2 cut(s)	361, 376
BccI	CCATC	1 cut(s)	459
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	4 cut(s)	101, 221, 239, 827
BglI	GCCNNNNNGGC	1 cut(s)	324
BisI	GCNGC	3 cut(s)	195, 375, 390
BlsI	GCNGC	3 cut(s)	196, 376, 391
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	2 cut(s)	284, 524
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmgT120I	GGNCC	3 cut(s)	181, 284, 524
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	83, 213
BmuI	ACTGGG	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	176
BsaJI	CCNNGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
BseGI	GGATG	2 cut(s)	74, 735
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	3 cut(s)	243, 351, 571
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	361, 376
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	117, 182
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	202, 510
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	2 cut(s)	202, 510
BsnI	GGCC	2 cut(s)	117, 182
Bsp143I	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
Bsp19I	CCATGG	4 cut(s)	106, 118, 345, 419
BspACI	CCGC	2 cut(s)	162, 195
BspANI	GGCC	2 cut(s)	117, 182
BspCNI	CTCAG	3 cut(s)	244, 352, 570
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	3 cut(s)	283, 295, 670
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
BssMI	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
BssT1I	CCWWGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	3 cut(s)	237, 596, 828
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	3 cut(s)	252, 360, 557
BstDSI	CCRYGG	4 cut(s)	106, 118, 345, 419
BstF5I	GGATG	2 cut(s)	74, 735
BstKTI	GATC	6 cut(s)	278, 303, 436, 665, 768, 781
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	361, 376
BstXI	CCANNNNNNTGG	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	117, 182
BtgI	CCRYGG	4 cut(s)	106, 118, 345, 419
BtsCI	GGATG	2 cut(s)	74, 735
Cac8I	GCNNGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	181, 284, 524
Csp6I	GTAC	5 cut(s)	4, 57, 136, 247, 844
CviAII	CATG	7 cut(s)	107, 119, 328, 346, 420, 442, 700
CviQI	GTAC	5 cut(s)	4, 57, 136, 247, 844
DdeI	CTNAG	3 cut(s)	252, 360, 557
DpnI	GATC	6 cut(s)	277, 302, 435, 664, 767, 780
DpnII	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
DriI	GACNNNNNGTC	1 cut(s)	214
Eam1104I	CTCTTC	3 cut(s)	237, 596, 828
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EarI	CTCTTC	3 cut(s)	237, 596, 828
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	284, 524
Eco57I	CTGAAG	2 cut(s)	183, 248
EcoRII	CCWGG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
ErhI	CCWWGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
FaeI	CATG	7 cut(s)	110, 122, 331, 349, 423, 445, 703
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	2 cut(s)	202, 510
FatI	CATG	7 cut(s)	106, 118, 327, 345, 419, 441, 699
FauNDI	CATATG	1 cut(s)	783
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	3 cut(s)	195, 375, 390
FokI	GGATG	2 cut(s)	61, 742
Fsp4HI	GCNGC	3 cut(s)	195, 375, 390
FspBI	CTAG	4 cut(s)	101, 221, 239, 827
GluI	GCNGC	3 cut(s)	195, 375, 390
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	117, 182
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	7 cut(s)	110, 122, 331, 349, 423, 445, 703
HinfI	GANTC	3 cut(s)	158, 589, 733
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	287, 620, 846
Hpy188I	TCNGA	2 cut(s)	253, 275
Hpy188III	TCNNGA	2 cut(s)	617, 827
Hpy8I	GTNNAC	3 cut(s)	287, 620, 846
HpyAV	CCTTC	2 cut(s)	619, 688
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	113, 445, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	3 cut(s)	252, 360, 557
Hsp92II	CATG	7 cut(s)	110, 122, 331, 349, 423, 445, 703
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
LmnI	GCTCC	2 cut(s)	122, 773
LpnPI	CCDG	9 cut(s)	99, 140, 178, 186, 371, 372, 398, 414, 491
Lsp1109I	GCAGC	2 cut(s)	361, 376
LweI	GCATC	2 cut(s)	83, 213
MaeI	CTAG	4 cut(s)	101, 221, 239, 827
MaeIII	GTNAC	4 cut(s)	167, 175, 311, 667
MalI	GATC	6 cut(s)	277, 302, 435, 664, 767, 780
MboI	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
MboII	GAAGA	6 cut(s)	236, 254, 509, 613, 649, 815
MluCI	AATT	4 cut(s)	366, 449, 716, 817
MlyI	GAGTC	2 cut(s)	167, 598
MmeI	TCCRAC	2 cut(s)	102, 450
MnlI	CCTC	3 cut(s)	194, 562, 646
MroXI	GAANNNNTTC	2 cut(s)	228, 641
MseI	TTAA	4 cut(s)	20, 596, 750, 850
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	324
NcoI	CCATGG	4 cut(s)	106, 118, 345, 419
NdeI	CATATG	1 cut(s)	783
NdeII	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
NlaIII	CATG	7 cut(s)	110, 122, 331, 349, 423, 445, 703
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	3 cut(s)	167, 175, 311
PdmI	GAANNNNTTC	2 cut(s)	228, 641
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	3 cut(s)	196, 376, 391
PleI	GAGTC	2 cut(s)	166, 597
PpsI	GAGTC	2 cut(s)	166, 597
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	3 cut(s)	181, 284, 524
RsaI	GTAC	5 cut(s)	5, 58, 137, 248, 845
RsaNI	GTAC	5 cut(s)	4, 57, 136, 247, 844
SaqAI	TTAA	4 cut(s)	20, 596, 750, 850
SatI	GCNGC	3 cut(s)	195, 375, 390
Sau3AI	GATC	6 cut(s)	275, 300, 433, 662, 765, 778
Sau96I	GGNCC	3 cut(s)	181, 284, 524
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	2 cut(s)	167, 598
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	6 cut(s)	18, 127, 177, 300, 313, 778
SfaNI	GCATC	2 cut(s)	83, 213
SinI	GGWCC	2 cut(s)	284, 524
Sse9I	AATT	4 cut(s)	366, 449, 716, 817
SsiI	CCGC	2 cut(s)	162, 195
SspMI	CTAG	4 cut(s)	101, 221, 239, 827
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	7 cut(s)	106, 118, 149, 319, 345, 419, 711
TaaI	ACNGT	1 cut(s)	489
TaqI	TCGA	3 cut(s)	186, 207, 576
TasI	AATT	4 cut(s)	366, 449, 716, 817
TatI	WGTACW	4 cut(s)	3, 56, 246, 843
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	4 cut(s)	20, 596, 750, 850
Tru9I	TTAA	4 cut(s)	20, 596, 750, 850
TseFI	GTSAC	3 cut(s)	167, 175, 311
TseI	GCWGC	2 cut(s)	374, 389
Tsp45I	GTSAC	3 cut(s)	167, 175, 311
TspDTI	ATGAA	6 cut(s)	221, 344, 430, 501, 506, 650
VpaK11BI	GGWCC	2 cut(s)	284, 524
XapI	RAATTY	2 cut(s)	366, 716
XbaI	TCTAGA	1 cut(s)	826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XmnI	GAANNNNTTC	2 cut(s)	228, 641
XspI	CTAG	4 cut(s)	101, 221, 239, 827
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.