Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

14573008 .. 14574584

Gene Structure 1577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCAGCATCCAATACACAGAAGCACTTTGTTCTAGTCCATGGTGCAGGCCATGGAGCTTGGTGTTGGTACAAAATCAAGCCAAGGCTGGAGTCCGCGGGTCACAAGGTCACGGCCCTCGATAATGCCGCTTCAGGCATCGACACCAAGTCCCTAGAAGATGTTCATTCACTGGAAGAGTACTCTGAGCCTTTGCTTCAGTTTATCGGATCACTTGGTCCACAAGAAAAGGTGATCCTTGTAGGTCACAGCCTTGGGGGCATGAACTTGGCTGTTGCCATGGAGAAGTTCCCTGAGAAAATTTCTGCTGCTGTCTTCCTGGCTGCTTTTCTGCCAGATACCACACACCACCCATGGTATATTGTAGATCAGCAAAAATTACCATTAGACAGATGGTTGGACACTCAGTTTGGACAATTTGGAGAAGAACCCTTTGCTTCAATTCATTTCGGTCCCAAGTTCTTGGCAACAAATCTCTATCAACTCAGCCCCATTGAGGATTTCGAACTCGCCAAGAGTCTAGTAAGGAAGAGTTCCTTGTTTCGGGAACAAGTGTGTAAGATGAAGAACTTCTCAAATGAGGGATATGGATCGGTTACAAGAGTTTATGCAGTTTGTGAAAAGGATTTGATAATAACCAAGGAATTTCAGCATTGGATGATTCAAAATAGTGGGGTTAAAGACGTGGTGGAGATCAAGGGAGCTGATCATATGCCGATGTTTTCAAAGCCGCAAGAACTCACCAATTCTCTTCTAGAGATAGCACAGAAGTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

260

Amino Acids

29.12

Weight (kDa)

6.12

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	6 - 115	9.7e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	9 - 243	3.9e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	10 - 247	9.1e-23	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	98
AciI	CCGC	4 cut(s)	96, 98, 129, 731
AclWI	GGATC	3 cut(s)	217, 229, 598
AcsI	RAATTY	2 cut(s)	300, 644
AcuI	CTGAAG	2 cut(s)	117, 182
AfaI	GTAC	3 cut(s)	71, 182, 773
AfiI	CCNNNNNNNGG	2 cut(s)	496, 543
AgsI	TTSAA	3 cut(s)	441, 665, 726
AhdI	GACNNNNNGTC	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	685
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	2 cut(s)	59, 704
AluI	AGCT	2 cut(s)	59, 704
AlwI	GGATC	3 cut(s)	217, 229, 598
AoxI	GGCC	2 cut(s)	49, 114
ApeKI	GCWGC	2 cut(s)	308, 323
ApoI	RAATTY	2 cut(s)	300, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	2 cut(s)	162, 569
AspS9I	GGNCC	3 cut(s)	115, 218, 452
AsuHPI	GGTGA	2 cut(s)	244, 733
AsuII	TTCGAA	1 cut(s)	504
AvaII	GGWCC	2 cut(s)	218, 452
BbsI	GAAGAC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	295, 310
BccI	CCATC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	706
BfaI	CTAG	4 cut(s)	35, 155, 521, 755
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	4 cut(s)	129, 309, 324, 731
BlsI	GCNGC	4 cut(s)	130, 310, 325, 732
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	218, 452
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	685
BmgT120I	GGNCC	3 cut(s)	115, 218, 452
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	17, 147
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	589
BsaJI	CCNNGG	8 cut(s)	40, 52, 83, 96, 253, 279, 353, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 543
Bse1I	ACTGG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	8 cut(s)	40, 52, 83, 96, 253, 279, 353, 639
BseGI	GGATG	2 cut(s)	8, 663
BseJI	GATNNNNATC	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	496, 543
BseMII	CTCAG	4 cut(s)	177, 285, 419, 499
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	295, 310
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	51, 116
BslFI	GGGAC	2 cut(s)	136, 438
BslI	CCNNNNNNNGG	2 cut(s)	496, 543
BsmFI	GGGAC	2 cut(s)	136, 438
BsnI	GGCC	2 cut(s)	51, 116
Bsp119I	TTCGAA	1 cut(s)	504
Bsp143I	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
Bsp19I	CCATGG	4 cut(s)	40, 52, 279, 353
BspACI	CCGC	4 cut(s)	96, 98, 129, 731
BspANI	GGCC	2 cut(s)	51, 116
BspCNI	CTCAG	4 cut(s)	178, 286, 418, 498
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	3 cut(s)	217, 229, 598
BspT104I	TTCGAA	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	8 cut(s)	40, 52, 83, 96, 253, 279, 353, 639
BssMI	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
BssT1I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 639
Bst2UI	CCWGG	1 cut(s)	320
Bst6I	CTCTTC	3 cut(s)	171, 524, 756
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	4 cut(s)	186, 294, 405, 485
BstDSI	CCRYGG	5 cut(s)	40, 52, 96, 279, 353
BstF5I	GGATG	2 cut(s)	8, 663
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	6 cut(s)	212, 237, 370, 593, 696, 709
BstMBI	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	295, 310
BstV2I	GAAGAC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	51, 116
BtgI	CCRYGG	5 cut(s)	40, 52, 96, 279, 353
BtrI	CACGTC	1 cut(s)	685
BtsCI	GGATG	2 cut(s)	8, 663
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	115, 218, 452
Cfr42I	CCGCGG	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	70, 181, 772
CviAII	CATG	5 cut(s)	41, 53, 262, 280, 354
CviQI	GTAC	3 cut(s)	70, 181, 772
DdeI	CTNAG	4 cut(s)	186, 294, 405, 485
DpnI	GATC	6 cut(s)	211, 236, 369, 592, 695, 708
DpnII	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	171, 524, 756
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	3 cut(s)	171, 524, 756
Eco130I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 639
Eco47I	GGWCC	2 cut(s)	218, 452
Eco57I	CTGAAG	2 cut(s)	117, 182
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 639
ErhI	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 639
FaeI	CATG	5 cut(s)	44, 56, 265, 283, 357
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	2 cut(s)	136, 438
FatI	CATG	5 cut(s)	40, 52, 261, 279, 353
FauI	CCCGC	1 cut(s)	91
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	4 cut(s)	129, 309, 324, 731
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	4 cut(s)	129, 309, 324, 731
FspBI	CTAG	4 cut(s)	35, 155, 521, 755
GluI	GCNGC	4 cut(s)	129, 309, 324, 731
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	51, 116
Hin1II	CATG	5 cut(s)	44, 56, 265, 283, 357
HinfI	GANTC	3 cut(s)	92, 517, 661
HphI	GGTGA	2 cut(s)	244, 733
Hpy166II	GTNNAC	2 cut(s)	221, 774
Hpy188I	TCNGA	2 cut(s)	187, 209
Hpy188III	TCNNGA	2 cut(s)	545, 755
Hpy8I	GTNNAC	2 cut(s)	221, 774
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	2 cut(s)	47, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	4 cut(s)	186, 294, 405, 485
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	5 cut(s)	44, 56, 265, 283, 357
Ksp22I	TGATCA	1 cut(s)	706
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
LmnI	GCTCC	2 cut(s)	56, 701
LpnPI	CCDG	8 cut(s)	33, 74, 120, 158, 305, 306, 332, 348
Lsp1109I	GCAGC	2 cut(s)	295, 310
LweI	GCATC	2 cut(s)	17, 147
MaeI	CTAG	4 cut(s)	35, 155, 521, 755
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	4 cut(s)	101, 109, 245, 595
MalI	GATC	6 cut(s)	211, 236, 369, 592, 695, 708
MboI	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
MboII	GAAGA	7 cut(s)	170, 188, 307, 437, 541, 577, 743
MluCI	AATT	6 cut(s)	300, 377, 416, 441, 644, 745
MlyI	GAGTC	2 cut(s)	101, 526
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	128, 490, 574
MroXI	GAANNNNTTC	2 cut(s)	162, 569
MseI	TTAA	2 cut(s)	678, 778
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	4 cut(s)	40, 52, 279, 353
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
NlaIII	CATG	5 cut(s)	44, 56, 265, 283, 357
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	3 cut(s)	101, 109, 245
NspV	TTCGAA	1 cut(s)	504
PdmI	GAANNNNTTC	2 cut(s)	162, 569
PfeI	GAWTC	1 cut(s)	661
PkrI	GCNGC	4 cut(s)	130, 310, 325, 732
PleI	GAGTC	2 cut(s)	100, 525
PpsI	GAGTC	2 cut(s)	100, 525
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	3 cut(s)	115, 218, 452
RsaI	GTAC	3 cut(s)	71, 182, 773
RsaNI	GTAC	3 cut(s)	70, 181, 772
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	678, 778
SatI	GCNGC	4 cut(s)	129, 309, 324, 731
Sau3AI	GATC	6 cut(s)	209, 234, 367, 590, 693, 706
Sau96I	GGNCC	3 cut(s)	115, 218, 452
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	101, 526
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	6 cut(s)	61, 111, 234, 247, 687, 706
SfaNI	GCATC	2 cut(s)	17, 147
Sfr303I	CCGCGG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	504
SgrBI	CCGCGG	1 cut(s)	99
SinI	GGWCC	2 cut(s)	218, 452
Sse9I	AATT	6 cut(s)	300, 377, 416, 441, 644, 745
SsiI	CCGC	4 cut(s)	96, 98, 129, 731
SspMI	CTAG	4 cut(s)	35, 155, 521, 755
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 639
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	3 cut(s)	120, 141, 504
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	6 cut(s)	300, 377, 416, 441, 644, 745
TatI	WGTACW	2 cut(s)	180, 771
TauI	GCSGC	2 cut(s)	131, 733
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	2 cut(s)	678, 778
Tru9I	TTAA	2 cut(s)	678, 778
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	3 cut(s)	101, 109, 245
TseI	GCWGC	2 cut(s)	308, 323
Tsp45I	GTSAC	3 cut(s)	101, 109, 245
TspDTI	ATGAA	4 cut(s)	155, 278, 434, 578
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	218, 452
XapI	RAATTY	2 cut(s)	300, 644
XbaI	TCTAGA	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XmnI	GAANNNNTTC	2 cut(s)	162, 569
XspI	CTAG	4 cut(s)	35, 155, 521, 755
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.