Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Reverse (-)

10047308 .. 10049413

Gene Structure 2106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGTGAGGAAAAGAGGAAACAACATTTTGTACTAGTACATGGTTCGTGCCATGGCGCGTGGTGCTGGTACAAGGTTAAGCCGCTGCTAGAGGCGGTGGGCCACCGCGTAACTGCTGTGGACTTAGCTGCCTCCGGAATAGACACAACGAGGTCGATCACTGACATCCCCACATGCGAACAATACTCGGAGCCATTGACGAAGCTCCTGACCTCATTGCCAAATGATGAAAAGGTTGTGCTCGTTGGTCACAGCTTTGGTGGCTTGAACTTAGCCATAGCCATGGAAAAGTTTCCCGAAAAAATCTCTGTCGCTGTATTCTTGACTGCTTTCATGCCGGACACCGAACACTCACCATCCTTCGTCTTGGACAAGTTTGGAAGCAACATGCCTCAAGAAGCATGGATGGGCACCGAATTCGAACCTTATGGTTCAGACAATTCCGGACTGAGTATGTTTTTTAGCCCTGACTTCATGAAGTTGGGTCTCTACCAGCTTTCTCCAGTTGAGGATCTTGAACTGGGATTACTTTTAATGAGGCCAGGATCGTTATTTATTAACGATTTATCGAAGATGAAAAACTTCTCGGATGAAGGATATGGGTCTGTTCCTCGAGTTTTCATAGTGTGTAAAGAGGACAAAGCAATTCCAGAAGAACGCCAGAGATGGATGATTGATAATTTTCCGGTGAATTTAGTGATGGAGATGGAGGAGACAGATCATATGCCAATGTTCTGCAAGCCTCAGCAACTCAGTGATTACTTCCTGAAAATCGCGGACAAATTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

263

Amino Acids

29.77

Weight (kDa)

4.97

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	9 - 245	4.2e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	10 - 245	1.1e-21	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AccII	CGCG	3 cut(s)	59, 108, 776
AccIII	TCCGGA	2 cut(s)	134, 443
AciI	CCGC	4 cut(s)	83, 95, 106, 776
AclWI	GGATC	2 cut(s)	519, 553
AcsI	RAATTY	3 cut(s)	416, 691, 782
AfaI	GTAC	3 cut(s)	33, 39, 71
AgsI	TTSAA	2 cut(s)	268, 518
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	4 cut(s)	128, 205, 255, 496
AluI	AGCT	4 cut(s)	128, 205, 255, 496
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	2 cut(s)	491, 707
AlwI	GGATC	2 cut(s)	519, 553
Ama87I	CYCGRG	1 cut(s)	612
Aor13HI	TCCGGA	2 cut(s)	134, 443
AoxI	GGCC	2 cut(s)	100, 539
ApeKI	GCWGC	2 cut(s)	85, 128
ApoI	RAATTY	3 cut(s)	416, 691, 782
Asp700I	GAANNNNTTC	2 cut(s)	291, 581
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	345, 700
AsuII	TTCGAA	1 cut(s)	420
AvaI	CYCGRG	1 cut(s)	612
BaeGI	GKGCMC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	72, 115
BccI	CCATC	5 cut(s)	364, 400, 660, 694, 700
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	491, 707
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 89
BisI	GCNGC	3 cut(s)	83, 86, 129
BlsI	GCNGC	3 cut(s)	84, 87, 130
Bme1390I	CCNGG	1 cut(s)	543
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	192, 412
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	52, 282
BsaWI	WCCGGW	3 cut(s)	134, 443, 685
Bse1I	ACTGG	2 cut(s)	503, 525
Bse3DI	GCAATG	1 cut(s)	215
BseAI	TCCGGA	2 cut(s)	134, 443
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	52, 282
BseGI	GGATG	5 cut(s)	165, 356, 411, 595, 675
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	3 cut(s)	440, 758, 766
BseNI	ACTGG	2 cut(s)	503, 525
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	72, 115
Bsh1236I	CGCG	3 cut(s)	59, 108, 776
BshFI	GGCC	2 cut(s)	102, 541
BshNI	GGYRCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	4 cut(s)	135, 338, 444, 686
BsmAI	GTCTC	2 cut(s)	491, 707
BsnI	GGCC	2 cut(s)	102, 541
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	612
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	243, 413
Bsp13I	TCCGGA	2 cut(s)	134, 443
Bsp143I	GATC	4 cut(s)	156, 511, 545, 718
Bsp19I	CCATGG	2 cut(s)	52, 282
BspACI	CCGC	4 cut(s)	83, 95, 106, 776
BspANI	GGCC	2 cut(s)	102, 541
BspCNI	CTCAG	3 cut(s)	441, 757, 765
BspEI	TCCGGA	2 cut(s)	134, 443
BspFNI	CGCG	3 cut(s)	59, 108, 776
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	192, 412
BspPI	GGATC	2 cut(s)	519, 553
BspT104I	TTCGAA	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	503, 525
BssECI	CCNNGG	2 cut(s)	52, 282
BssMI	GATC	4 cut(s)	156, 511, 545, 718
BssT1I	CCWWGG	2 cut(s)	52, 282
Bst2UI	CCWGG	1 cut(s)	543
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	5 cut(s)	124, 271, 449, 744, 752
BstDSI	CCRYGG	2 cut(s)	52, 282
BstF5I	GGATG	5 cut(s)	165, 356, 411, 595, 675
BstFNI	CGCG	3 cut(s)	59, 108, 776
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	4 cut(s)	159, 514, 548, 721
BstMAI	GTCTC	2 cut(s)	491, 707
BstMBI	GATC	4 cut(s)	156, 511, 545, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 261
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	177, 391
BstSCI	CCNGG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	413
BstUI	CGCG	3 cut(s)	59, 108, 776
BstV1I	GCAGC	2 cut(s)	72, 115
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	102, 541
BtgI	CCRYGG	2 cut(s)	52, 282
BtsCI	GGATG	5 cut(s)	165, 356, 411, 595, 675
BtsIMutI	CAGTG	2 cut(s)	159, 760
Cac8I	GCNNGC	1 cut(s)	740
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	32, 38, 70
CviAII	CATG	8 cut(s)	41, 53, 174, 283, 334, 388, 402, 475
CviQI	GTAC	3 cut(s)	32, 38, 70
DdeI	CTNAG	5 cut(s)	124, 271, 449, 744, 752
DpnI	GATC	4 cut(s)	158, 513, 547, 720
DpnII	GATC	4 cut(s)	156, 511, 545, 718
Eco130I	CCWWGG	2 cut(s)	52, 282
Eco31I	GGTCTC	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	612
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	52, 282
ErhI	CCWWGG	2 cut(s)	52, 282
FaeI	CATG	8 cut(s)	44, 56, 177, 286, 337, 391, 405, 478
FatI	CATG	8 cut(s)	40, 52, 173, 282, 333, 387, 401, 474
FauNDI	CATATG	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	83, 86, 129
FokI	GGATG	5 cut(s)	152, 343, 418, 602, 682
Fsp4HI	GCNGC	3 cut(s)	83, 86, 129
FspBI	CTAG	2 cut(s)	35, 89
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	3 cut(s)	83, 86, 129
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	102, 541
HapII	CCGG	4 cut(s)	135, 338, 444, 686
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	8 cut(s)	44, 56, 177, 286, 337, 391, 405, 478
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HpaII	CCGG	4 cut(s)	135, 338, 444, 686
HphI	GGTGA	2 cut(s)	345, 700
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	190, 436, 589
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	370, 587
HpyCH4V	TGCA	1 cut(s)	738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 261
HpyF3I	CTNAG	5 cut(s)	124, 271, 449, 744, 752
Hsp92II	CATG	8 cut(s)	44, 56, 177, 286, 337, 391, 405, 478
HspAI	GCGC	1 cut(s)	57
Kpn2I	TCCGGA	2 cut(s)	134, 443
Kzo9I	GATC	4 cut(s)	156, 511, 545, 718
LmnI	GCTCC	2 cut(s)	190, 210
Lsp1109I	GCAGC	2 cut(s)	72, 115
MaeI	CTAG	2 cut(s)	35, 89
MaeIII	GTNAC	2 cut(s)	109, 248
MalI	GATC	4 cut(s)	158, 513, 547, 720
MboI	GATC	4 cut(s)	156, 511, 545, 718
MboII	GAAGA	2 cut(s)	583, 665
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	243, 413
MluCI	AATT	6 cut(s)	416, 439, 645, 679, 691, 782
MroI	TCCGGA	2 cut(s)	134, 443
MroXI	GAANNNNTTC	2 cut(s)	291, 581
MseI	TTAA	4 cut(s)	78, 533, 558, 790
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	4 cut(s)	135, 338, 444, 686
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	3 cut(s)	59, 108, 776
MwoI	GCNNNNNNNGC	2 cut(s)	63, 261
NcoI	CCATGG	2 cut(s)	52, 282
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	4 cut(s)	156, 511, 545, 718
NlaIII	CATG	8 cut(s)	44, 56, 177, 286, 337, 391, 405, 478
NlaIV	GGNNCC	2 cut(s)	192, 412
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	2 cut(s)	177, 391
NspV	TTCGAA	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	612
PagI	TCATGA	1 cut(s)	474
PdmI	GAANNNNTTC	2 cut(s)	291, 581
PkrI	GCNGC	3 cut(s)	84, 87, 130
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	192, 412
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	612
PsrI	GAACNNNNNNTAC	2 cut(s)	510, 542
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	3 cut(s)	33, 39, 71
RsaNI	GTAC	3 cut(s)	32, 38, 70
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	4 cut(s)	78, 533, 558, 790
SatI	GCNGC	3 cut(s)	83, 86, 129
Sau3AI	GATC	4 cut(s)	156, 511, 545, 718
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	243, 413
SetI	ASST	9 cut(s)	78, 130, 155, 207, 215, 237, 257, 427, 498
Sfr274I	CTCGAG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	420
SlaI	CTCGAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	2 cut(s)	393, 612
SmoI	CTYRAG	2 cut(s)	393, 612
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	6 cut(s)	416, 439, 645, 679, 691, 782
SsiI	CCGC	4 cut(s)	83, 95, 106, 776
SspMI	CTAG	2 cut(s)	35, 89
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	2 cut(s)	52, 282
TaqI	TCGA	4 cut(s)	155, 420, 569, 613
TasI	AATT	6 cut(s)	416, 439, 645, 679, 691, 782
TatI	WGTACW	2 cut(s)	31, 37
TauI	GCSGC	1 cut(s)	85
Tru1I	TTAA	4 cut(s)	78, 533, 558, 790
Tru9I	TTAA	4 cut(s)	78, 533, 558, 790
TscAI	CASTG	2 cut(s)	166, 760
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	85, 128
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	7 cut(s)	243, 322, 463, 491, 590, 606, 610
TspRI	CASTG	2 cut(s)	166, 760
XapI	RAATTY	3 cut(s)	416, 691, 782
XceI	RCATGY	2 cut(s)	177, 391
XhoI	CTCGAG	1 cut(s)	612
XmnI	GAANNNNTTC	2 cut(s)	291, 581
XspI	CTAG	2 cut(s)	35, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.