Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

18009829 .. 18011001

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAGGATCCAACGGAGAACGGAAGGCGCATTTTGTTCTAGTACACGGCGCGGGTCATGGGGCTTGGTGCTGGTACAAGATCAAACCCAAGCTCGAGTCCGGTGGTCACAGAGTCACCGTTCTTAACCTCGCAGCATCGGGCATCAACATGAAGGCCATACAAGATGTTCACTCACTTACTGAGTACTCTGAGCCCTTGTTAGAGTTGATAGAATCGCTCGCTCCAAACGAAAAGGTGATCCTCGTAGGACATAGTCTTGGAGGCATGAACTTATCCCTTGCCATGGAAAAGTTCCCACACAAAATCTCTGCTGCTGTTTTCTTGACTGCGTTTCTGCCCGACACAACTCACCAGCCGTCTTATGTTATGGATCAGTTCCTGGAAAAGAAACCGGCAGATTCATGGTTGGATACTCGGTTTGAGAAATTTGGAAGCCCCGAACAACCCTTGACATCGATTTTCTTTGGTCCCAAGTGCCTACAAGAGATTCTCTATCAACTTAGCCCGATCGAGGATTTGGAACTTGCCAAGAGCTTAGTAAGGAAGAGTTCGTTCTTTCGTGAAGAAGTGGCTAAGATGAAGAAATTCTCGAATGAGGAATACGGTTCAGTTACACGAGTTTATGTGGTTTGTGACAAAGATTTGATAATAACTGAGGAATTTCAACGATGGATGATTGCAAACAGCGGGGTTAAAAATGTGGTCGAGATTAAGGGTGCTGATCATATGCCGATGTTTTCAAAGCCACAAGAACTATCCAATTCTCTTATGGAGATTGCCCAGAAGTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

266

Amino Acids

29.78

Weight (kDa)

6.32

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	7 - 119	4.2e-08	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	11 - 250	2.2e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	12 - 253	3.7e-22	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	53, 690
AclWI	GGATC	4 cut(s)	3, 16, 235, 381
AcsI	RAATTY	3 cut(s)	428, 587, 662
AfaI	GTAC	3 cut(s)	45, 77, 188
AfiI	CCNNNNNNNGG	2 cut(s)	286, 514
AgsI	TTSAA	2 cut(s)	668, 744
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	94, 537
AluI	AGCT	2 cut(s)	94, 537
AlwI	GGATC	4 cut(s)	3, 16, 235, 381
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	134, 314
ApoI	RAATTY	3 cut(s)	428, 587, 662
Asp700I	GAANNNNTTC	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	31, 53
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	109, 250, 344
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	470
BamHI	GGATCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	146, 301
BccI	CCATC	1 cut(s)	666
BceAI	ACGGC	2 cut(s)	64, 343
BciT130I	CCWGG	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	724
BfaI	CTAG	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	135, 315
BlsI	GCNGC	2 cut(s)	136, 316
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	10, 472
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	146, 153
Bsa29I	ATCGAT	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 514
Bse118I	RCCGGY	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	383
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	286, 514
BseMII	CTCAG	3 cut(s)	174, 183, 648
BseXI	GCAGC	2 cut(s)	146, 301
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	102, 395
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	286, 514
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	2 cut(s)	53, 690
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	3 cut(s)	175, 184, 649
BspDI	ATCGAT	1 cut(s)	458
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	10, 472
BspPI	GGATC	4 cut(s)	3, 16, 235, 381
BsrFI	RCCGGY	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
BssSI	CACGAG	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	121, 608
Bst6I	CTCTTC	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	6 cut(s)	183, 192, 503, 538, 576, 657
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	681
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	31, 53
BstKTI	GATC	6 cut(s)	11, 84, 243, 376, 513, 727
BstMBI	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
BstMCI	CGRYCG	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	146, 301
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	158
BsuTUI	ATCGAT	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	681
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	382
CfoI	GCGC	2 cut(s)	31, 53
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	44, 76, 187
CviAII	CATG	5 cut(s)	59, 151, 268, 286, 405
CviQI	GTAC	3 cut(s)	44, 76, 187
DdeI	CTNAG	6 cut(s)	183, 192, 503, 538, 576, 657
DpnI	GATC	6 cut(s)	10, 83, 242, 375, 512, 726
DpnII	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	5 cut(s)	62, 154, 271, 289, 408
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	5 cut(s)	58, 150, 267, 285, 404
FauI	CCCGC	2 cut(s)	46, 683
FauNDI	CATATG	1 cut(s)	729
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	135, 315
FokI	GGATG	1 cut(s)	688
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	135, 315
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	2 cut(s)	30, 52
GluI	GCNGC	2 cut(s)	135, 315
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	2 cut(s)	102, 395
HhaI	GCGC	2 cut(s)	31, 53
Hin1II	CATG	5 cut(s)	62, 154, 271, 289, 408
Hin6I	GCGC	2 cut(s)	29, 51
HinP1I	GCGC	2 cut(s)	29, 51
HinfI	GANTC	5 cut(s)	98, 114, 215, 401, 490
HpaII	CCGG	2 cut(s)	102, 395
HphI	GGTGA	3 cut(s)	109, 250, 344
Hpy166II	GTNNAC	2 cut(s)	46, 172
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	4 cut(s)	325, 563, 592, 709
Hpy8I	GTNNAC	2 cut(s)	46, 172
HpyAV	CCTTC	2 cut(s)	19, 148
HpyCH4III	ACNGT	2 cut(s)	121, 608
HpyCH4V	TGCA	1 cut(s)	683
HpyF3I	CTNAG	6 cut(s)	183, 192, 503, 538, 576, 657
Hsp92II	CATG	5 cut(s)	62, 154, 271, 289, 408
HspAI	GCGC	2 cut(s)	29, 51
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	58, 115, 368, 368, 395, 408
Lsp1109I	GCAGC	2 cut(s)	146, 301
LweI	GCATC	2 cut(s)	146, 153
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	107, 115, 613, 635
MalI	GATC	6 cut(s)	10, 83, 242, 375, 512, 726
MboI	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
MboII	GAAGA	3 cut(s)	559, 578, 595
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	4 cut(s)	428, 587, 662, 763
MlyI	GAGTC	2 cut(s)	107, 123
MmeI	TCCRAC	2 cut(s)	36, 390
MnlI	CCTC	6 cut(s)	140, 254, 257, 508, 592, 652
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	3 cut(s)	126, 696, 714
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	690
MspI	CCGG	2 cut(s)	102, 395
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	729
NdeII	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
NlaIII	CATG	5 cut(s)	62, 154, 271, 289, 408
NlaIV	GGNNCC	2 cut(s)	10, 472
NmuCI	GTSAC	3 cut(s)	107, 115, 635
PaeR7I	CTCGAG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	3 cut(s)	215, 401, 490
PflFI	GACNNNGTC	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	136, 316
Ple19I	CGATCG	1 cut(s)	513
PleI	GAGTC	2 cut(s)	106, 122
PpsI	GAGTC	2 cut(s)	106, 122
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	10, 472
PspPI	GGNCC	1 cut(s)	470
PspXI	VCTCGAGB	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	255
PvuI	CGATCG	1 cut(s)	513
RsaI	GTAC	3 cut(s)	45, 77, 188
RsaNI	GTAC	3 cut(s)	44, 76, 187
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	126, 696, 714
SatI	GCNGC	2 cut(s)	135, 315
Sau3AI	GATC	6 cut(s)	8, 81, 240, 373, 510, 724
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	2 cut(s)	107, 123
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	4 cut(s)	96, 132, 240, 539
SfaNI	GCATC	2 cut(s)	146, 153
Sfr274I	CTCGAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	4 cut(s)	428, 587, 662, 763
SsiI	CCGC	2 cut(s)	53, 690
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	121, 608
TaqI	TCGA	5 cut(s)	96, 458, 513, 593, 708
TasI	AATT	4 cut(s)	428, 587, 662, 763
TatI	WGTACW	2 cut(s)	43, 186
TfiI	GAWTC	3 cut(s)	215, 401, 490
Tru1I	TTAA	3 cut(s)	126, 696, 714
Tru9I	TTAA	3 cut(s)	126, 696, 714
TseFI	GTSAC	3 cut(s)	107, 115, 635
TseI	GCWGC	2 cut(s)	134, 314
Tsp45I	GTSAC	3 cut(s)	107, 115, 635
TspDTI	ATGAA	4 cut(s)	167, 284, 393, 596
TspGWI	ACGGA	2 cut(s)	30, 37
Tth111I	GACNNNGTC	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	3 cut(s)	428, 587, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.