Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002081.1

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

3765 .. 6125

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgggaatggtcgaaggagacggaggcgctgatcgagccggtgatgatgacaaagaaggtggcgatgtagattcaggcgaagggaggagatgcaggaggccgtcggtatcgacttttgggagtgaaactgctctacaaccaagtacagagaaaatgtcagcatccaacacacagaagcactttgttctagtccatggtgcaggccatggagcttggtgttggtacaaaatcaagccaacgctggagtccgccggtcacaaggtcacggccctcaataatgcggcttcaggcatcgacaccaagtccctagaagatgttcattcactagaagagtactctgagcctttgcttcagtttatcggatcacttggtccacaagaaaaggtgatccttgtaggtcacagccttgggggcatgaacttggctgttgccatggagaagttccctgagaaaatttctgctgctgttttcctggctgcttttctgccagataccacccaccacccatggtatattgtagatcagttcatgcaaaaattaccattagacagatggttggacacccagtttggacagtttggagaagaaccctttgcttcatttcattttggtcccaagttcttggcaacaagtctctatcaactcagccccattgaggatatcgaactcgccaagagtctagtaaggaagagttccttctttcgtgaacaagtgtgtaagatgaagaacttctcaaatgagggttatggatcggttacaagagtttatgcaatttgtgagaaggacatggtaataaccaaggaatttcagcattggatgattcaaaatagtggggttaaagatgtggtggagatcaagggagctgatcatatgccaatgttttcaaagccacaagaactttccaattctcttctagagatagcacagaagtacacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

312

Amino Acids

34.6

Weight (kDa)

5.58

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	249, 281
AclWI	GGATC	3 cut(s)	370, 382, 757
AcsI	RAATTY	2 cut(s)	453, 803
AcuI	CTGAAG	2 cut(s)	270, 335
AfaI	GTAC	4 cut(s)	145, 224, 335, 932
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	2 cut(s)	824, 885
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	2 cut(s)	212, 863
AluI	AGCT	2 cut(s)	212, 863
Alw26I	GTCTC	2 cut(s)	12, 638
AlwI	GGATC	3 cut(s)	370, 382, 757
AoxI	GGCC	3 cut(s)	98, 202, 267
ApeKI	GCWGC	2 cut(s)	461, 476
ApoI	RAATTY	2 cut(s)	453, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
Asp700I	GAANNNNTTC	2 cut(s)	315, 728
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	268, 371, 611
AsuHPI	GGTGA	2 cut(s)	53, 397
AvaII	GGWCC	2 cut(s)	371, 611
BbvI	GCAGC	2 cut(s)	448, 463
BccI	CCATC	1 cut(s)	546
BceAI	ACGGC	2 cut(s)	85, 282
BciT130I	CCWGG	1 cut(s)	473
BclI	TGATCA	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	12, 638
BfaI	CTAG	5 cut(s)	188, 308, 326, 680, 914
BfoI	RGCGCY	1 cut(s)	30
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	3 cut(s)	282, 462, 477
BlsI	GCNGC	3 cut(s)	283, 463, 478
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	2 cut(s)	371, 611
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	268, 371, 611
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	473
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	3 cut(s)	80, 170, 300
BmuI	ACTGGG	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	263
BsaJI	CCNNGG	6 cut(s)	193, 205, 406, 432, 506, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse118I	RCCGGY	2 cut(s)	38, 251
Bse1I	ACTGG	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	6 cut(s)	193, 205, 406, 432, 506, 798
BseGI	GGATG	2 cut(s)	161, 822
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	330, 438, 658
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	448, 463
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	100, 204, 269
BsiSI	CCGG	2 cut(s)	39, 252
BslFI	GGGAC	2 cut(s)	289, 597
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	2 cut(s)	12, 638
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	289, 597
BsnI	GGCC	3 cut(s)	100, 204, 269
Bsp143I	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
Bsp19I	CCATGG	4 cut(s)	193, 205, 432, 506
BspACI	CCGC	2 cut(s)	249, 281
BspANI	GGCC	3 cut(s)	100, 204, 269
BspCNI	CTCAG	3 cut(s)	331, 439, 657
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	3 cut(s)	370, 382, 757
BsrFI	RCCGGY	2 cut(s)	38, 251
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	2 cut(s)	38, 251
BssECI	CCNNGG	6 cut(s)	193, 205, 406, 432, 506, 798
BssMI	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
BssT1I	CCWWGG	6 cut(s)	193, 205, 406, 432, 506, 798
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	3 cut(s)	324, 683, 915
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	339, 447, 644
BstDSI	CCRYGG	4 cut(s)	193, 205, 432, 506
BstF5I	GGATG	2 cut(s)	161, 822
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	7 cut(s)	34, 365, 390, 523, 752, 855, 868
BstMAI	GTCTC	2 cut(s)	12, 638
BstMBI	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 411
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	448, 463
BstXI	CCANNNNNNTGG	1 cut(s)	622
BsuRI	GGCC	3 cut(s)	100, 204, 269
BtgI	CCRYGG	4 cut(s)	193, 205, 432, 506
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	161, 822
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	2 cut(s)	38, 251
Cfr13I	GGNCC	3 cut(s)	268, 371, 611
Csp6I	GTAC	4 cut(s)	144, 223, 334, 931
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	7 cut(s)	194, 206, 415, 433, 507, 529, 787
CviQI	GTAC	4 cut(s)	144, 223, 334, 931
DdeI	CTNAG	3 cut(s)	339, 447, 644
DpnI	GATC	7 cut(s)	33, 364, 389, 522, 751, 854, 867
DpnII	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1104I	CTCTTC	3 cut(s)	324, 683, 915
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	3 cut(s)	324, 683, 915
EciI	GGCGGA	1 cut(s)	238
Eco130I	CCWWGG	6 cut(s)	193, 205, 406, 432, 506, 798
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	2 cut(s)	371, 611
Eco57I	CTGAAG	2 cut(s)	270, 335
EcoRII	CCWGG	1 cut(s)	471
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	6 cut(s)	193, 205, 406, 432, 506, 798
ErhI	CCWWGG	6 cut(s)	193, 205, 406, 432, 506, 798
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	7 cut(s)	197, 209, 418, 436, 510, 532, 790
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	2 cut(s)	289, 597
FatI	CATG	7 cut(s)	193, 205, 414, 432, 506, 528, 786
FauNDI	CATATG	1 cut(s)	870
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	3 cut(s)	282, 462, 477
FokI	GGATG	2 cut(s)	148, 829
Fsp4HI	GCNGC	3 cut(s)	282, 462, 477
FspBI	CTAG	5 cut(s)	188, 308, 326, 680, 914
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	282, 462, 477
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	100, 204, 269
HapII	CCGG	2 cut(s)	39, 252
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	7 cut(s)	197, 209, 418, 436, 510, 532, 790
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	4 cut(s)	71, 245, 676, 820
HpaII	CCGG	2 cut(s)	39, 252
HphI	GGTGA	2 cut(s)	53, 397
Hpy166II	GTNNAC	3 cut(s)	374, 707, 933
Hpy188I	TCNGA	2 cut(s)	340, 362
Hpy188III	TCNNGA	2 cut(s)	704, 914
Hpy8I	GTNNAC	3 cut(s)	374, 707, 933
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	5 cut(s)	8, 50, 74, 706, 775
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4V	TGCA	4 cut(s)	93, 200, 532, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 411
HpyF3I	CTNAG	3 cut(s)	339, 447, 644
Hsp92II	CATG	7 cut(s)	197, 209, 418, 436, 510, 532, 790
HspAI	GCGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
LmnI	GCTCC	2 cut(s)	209, 860
Lsp1109I	GCAGC	2 cut(s)	448, 463
LweI	GCATC	3 cut(s)	80, 170, 300
MaeI	CTAG	5 cut(s)	188, 308, 326, 680, 914
MaeIII	GTNAC	4 cut(s)	254, 262, 398, 754
MalI	GATC	7 cut(s)	33, 364, 389, 522, 751, 854, 867
MboI	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
MboII	GAAGA	6 cut(s)	323, 341, 596, 700, 736, 902
MluCI	AATT	5 cut(s)	453, 536, 771, 803, 904
MlyI	GAGTC	2 cut(s)	254, 685
MmeI	TCCRAC	2 cut(s)	189, 537
MnlI	CCTC	6 cut(s)	17, 78, 90, 281, 649, 733
MroXI	GAANNNNTTC	2 cut(s)	315, 728
MseI	TTAA	2 cut(s)	837, 937
MspI	CCGG	2 cut(s)	39, 252
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	35, 411
NcoI	CCATGG	4 cut(s)	193, 205, 432, 506
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
NlaIII	CATG	7 cut(s)	197, 209, 418, 436, 510, 532, 790
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	3 cut(s)	254, 262, 398
PdmI	GAANNNNTTC	2 cut(s)	315, 728
PfeI	GAWTC	2 cut(s)	71, 820
PkrI	GCNGC	3 cut(s)	283, 463, 478
PleI	GAGTC	2 cut(s)	253, 684
PpsI	GAGTC	2 cut(s)	253, 684
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	3 cut(s)	268, 371, 611
RsaI	GTAC	4 cut(s)	145, 224, 335, 932
RsaNI	GTAC	4 cut(s)	144, 223, 334, 931
SaqAI	TTAA	2 cut(s)	837, 937
SatI	GCNGC	3 cut(s)	282, 462, 477
Sau3AI	GATC	7 cut(s)	31, 362, 387, 520, 749, 852, 865
Sau96I	GGNCC	3 cut(s)	268, 371, 611
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	2 cut(s)	254, 685
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	6 cut(s)	61, 214, 264, 387, 400, 865
SfaNI	GCATC	3 cut(s)	80, 170, 300
SinI	GGWCC	2 cut(s)	371, 611
Sse9I	AATT	5 cut(s)	453, 536, 771, 803, 904
SsiI	CCGC	2 cut(s)	249, 281
SspMI	CTAG	5 cut(s)	188, 308, 326, 680, 914
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	6 cut(s)	193, 205, 406, 432, 506, 798
TaaI	ACNGT	1 cut(s)	576
TaqI	TCGA	5 cut(s)	12, 34, 110, 294, 663
TasI	AATT	5 cut(s)	453, 536, 771, 803, 904
TatI	WGTACW	3 cut(s)	143, 333, 930
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	71, 820
Tru1I	TTAA	2 cut(s)	837, 937
Tru9I	TTAA	2 cut(s)	837, 937
TseFI	GTSAC	3 cut(s)	254, 262, 398
TseI	GCWGC	2 cut(s)	461, 476
Tsp45I	GTSAC	3 cut(s)	254, 262, 398
TspDTI	ATGAA	6 cut(s)	308, 431, 517, 588, 593, 737
TspGWI	ACGGA	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	371, 611
XapI	RAATTY	2 cut(s)	453, 803
XbaI	TCTAGA	1 cut(s)	913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	549
XmnI	GAANNNNTTC	2 cut(s)	315, 728
XspI	CTAG	5 cut(s)	188, 308, 326, 680, 914
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.