Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

13577283 .. 13578550

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1161600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAGGATCCAGCGGAGAACAGAAGGCGCATTTTGTTCTAGTACACGGCGCAGGTCATGGCGCTTGGTTCTGGTACAAGATAAAACCGAAGCTCGAGTCCGGTGGTCACAGAGTCACGGCGCTTAACCTCGCAGCTTCGGGCACCAACATGAAGGCGATACAAGATGTTCACTCACTGACTGAGTACTCTGAGCCTTTGTTAGAGTTGATAGAATCGCTCGGTCCGGAAGAAAAGGTGATCCTCGTAGGACATAGTCTCGGAGGCTTGAACTTGTCCCTTGCCATGGAAAAGTTCCCACATAAAATTTCTGCTGCCGTTTTCTTGACTGCGCTTCTGCCCGACACAACTCACCAGCCCTCTTATATTATAGATCAGTTAATGGAAAAATTACCGGCAGACTCATGGTTGGACACTCGCTTTGAGAAATTTGGAAGCGCCGAGCAACCCTTGACATCGATATTATTAGGTCCCAAGTTCTTACAAGAGAGACTCTATCAACTCAGCCCAATCGAGGATCTGGAACTTGCCAAGAGTTTAGTAAGGAAGAGTTCATTATTTCGTGAAGAAATGGCTAAGATGAAGAAATTCTCGAATGAGGGATACGGGTCAGTTACACGAGTTTATGTGGTTTGTGACAAAGATTTGATAAAATCTGAGGAATTTCAACGATGGATGATTGCAAACAGCGGGGTTAAAAATGTGGTGGAGATTAAGGGTGCCGATCATATGCCAATGTTTTCGAAGCCTCAAGAACTATCCAATTCACTTATGGAGATTGCACAAAAGTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

266

Amino Acids

29.55

Weight (kDa)

6.32

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	7 - 119	4.6e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	11 - 250	9.3e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	12 - 253	1.4e-21	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	143, 719
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	15, 690
AclWI	GGATC	4 cut(s)	3, 16, 235, 525
AcsI	RAATTY	4 cut(s)	306, 428, 587, 662
AfaI	GTAC	3 cut(s)	45, 77, 188
AfiI	CCNNNNNNNGG	2 cut(s)	286, 514
AgsI	TTSAA	2 cut(s)	271, 668
AluBI	AGCT	2 cut(s)	94, 137
AluI	AGCT	2 cut(s)	94, 137
Alw26I	GTCTC	2 cut(s)	263, 484
AlwI	GGATC	4 cut(s)	3, 16, 235, 525
Ama87I	CYCGRG	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	134, 314
ApoI	RAATTY	4 cut(s)	306, 428, 587, 662
ArsI	GACNNNNNNTTYG	4 cut(s)	83, 115, 404, 436
Asp700I	GAANNNNTTC	1 cut(s)	587
AspLEI	GCGC	6 cut(s)	31, 53, 65, 124, 334, 440
AspS9I	GGNCC	2 cut(s)	224, 470
AsuHPI	GGTGA	2 cut(s)	250, 344
AsuII	TTCGAA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	224, 470
BaeGI	GKGCMC	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	143, 719
BauI	CACGAG	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	146, 301
BccI	CCATC	1 cut(s)	666
BceAI	ACGGC	3 cut(s)	64, 135, 302
BciVI	GTATCC	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	263, 484
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	3 cut(s)	66, 125, 441
BfuAI	ACCTGC	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	2 cut(s)	135, 315
BlsI	GCNGC	2 cut(s)	136, 316
BmcAI	AGTACT	1 cut(s)	188
Bme18I	GGWCC	2 cut(s)	224, 470
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	224, 470
BmiI	GGNNCC	4 cut(s)	10, 145, 472, 721
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	735
Bsa29I	ATCGAT	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	2 cut(s)	101, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 514
Bse118I	RCCGGY	1 cut(s)	394
BseAI	TCCGGA	1 cut(s)	226
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	286, 514
BseMII	CTCAG	4 cut(s)	174, 183, 517, 648
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	146, 301
BshNI	GGYRCC	2 cut(s)	143, 719
BshVI	ATCGAT	1 cut(s)	458
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	102, 227, 395
BslFI	GGGAC	2 cut(s)	262, 456
BslI	CCNNNNNNNGG	2 cut(s)	286, 514
BsmAI	GTCTC	2 cut(s)	263, 484
BsmFI	GGGAC	2 cut(s)	262, 456
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	8, 240, 373, 517, 724
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	2 cut(s)	15, 690
BspCNI	CTCAG	4 cut(s)	175, 184, 516, 649
BspDI	ATCGAT	1 cut(s)	458
BspEI	TCCGGA	1 cut(s)	226
BspLI	GGNNCC	4 cut(s)	10, 145, 472, 721
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	4 cut(s)	3, 16, 235, 525
BspT104I	TTCGAA	1 cut(s)	743
BspT107I	GGYRCC	2 cut(s)	143, 719
BsrFI	RCCGGY	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	5 cut(s)	8, 240, 373, 517, 724
BssSI	CACGAG	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	618
Bst6I	CTCTTC	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	743
BstDEI	CTNAG	5 cut(s)	183, 192, 503, 576, 657
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	681
BstH2I	RGCGCY	3 cut(s)	66, 125, 441
BstHHI	GCGC	6 cut(s)	31, 53, 65, 124, 334, 440
BstKTI	GATC	5 cut(s)	11, 243, 376, 520, 727
BstMAI	GTCTC	2 cut(s)	263, 484
BstMBI	GATC	5 cut(s)	8, 240, 373, 517, 724
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	146, 301
BstX2I	RGATCY	2 cut(s)	8, 517
BstYI	RGATCY	2 cut(s)	8, 517
Bsu15I	ATCGAT	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	596
BsuTUI	ATCGAT	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	681
BtsIMutI	CAGTG	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	44
CfoI	GCGC	6 cut(s)	31, 53, 65, 124, 334, 440
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	224, 470
ClaI	ATCGAT	1 cut(s)	458
CpoI	CGGWCCG	1 cut(s)	224
Csp6I	GTAC	3 cut(s)	44, 76, 187
CspI	CGGWCCG	1 cut(s)	224
CviAII	CATG	4 cut(s)	59, 151, 286, 405
CviJI	RGCY	8 cut(s)	94, 137, 196, 267, 358, 507, 575, 748
CviKI_1	RGCY	8 cut(s)	94, 137, 196, 267, 358, 507, 575, 748
CviQI	GTAC	3 cut(s)	44, 76, 187
DdeI	CTNAG	5 cut(s)	183, 192, 503, 576, 657
DpnI	GATC	5 cut(s)	10, 242, 375, 519, 726
DpnII	GATC	5 cut(s)	8, 240, 373, 517, 724
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	224, 470
Eco88I	CYCGRG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	62, 154, 289, 408
FaqI	GGGAC	2 cut(s)	262, 456
FatI	CATG	4 cut(s)	58, 150, 285, 404
FauI	CCCGC	1 cut(s)	683
FauNDI	CATATG	1 cut(s)	729
Fnu4HI	GCNGC	2 cut(s)	135, 315
FokI	GGATG	1 cut(s)	688
Fsp4HI	GCNGC	2 cut(s)	135, 315
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	6 cut(s)	30, 52, 64, 123, 333, 439
GluI	GCNGC	2 cut(s)	135, 315
HaeII	RGCGCY	3 cut(s)	66, 125, 441
HapII	CCGG	3 cut(s)	102, 227, 395
HhaI	GCGC	6 cut(s)	31, 53, 65, 124, 334, 440
Hin1II	CATG	4 cut(s)	62, 154, 289, 408
Hin6I	GCGC	6 cut(s)	29, 51, 63, 122, 332, 438
HinP1I	GCGC	6 cut(s)	29, 51, 63, 122, 332, 438
HinfI	GANTC	5 cut(s)	98, 114, 215, 401, 492
HpaII	CCGG	3 cut(s)	102, 227, 395
HphI	GGTGA	2 cut(s)	250, 344
Hpy166II	GTNNAC	2 cut(s)	46, 172
Hpy188I	TCNGA	3 cut(s)	193, 263, 658
Hpy188III	TCNNGA	6 cut(s)	227, 325, 521, 563, 592, 752
Hpy8I	GTNNAC	2 cut(s)	46, 172
HpyAV	CCTTC	2 cut(s)	19, 148
HpyCH4V	TGCA	2 cut(s)	683, 782
HpyF3I	CTNAG	5 cut(s)	183, 192, 503, 576, 657
Hsp92II	CATG	4 cut(s)	62, 154, 289, 408
HspAI	GCGC	6 cut(s)	29, 51, 63, 122, 332, 438
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	5 cut(s)	8, 240, 373, 517, 724
LpnPI	CCDG	8 cut(s)	25, 39, 58, 115, 240, 368, 408, 506
Lsp1109I	GCAGC	2 cut(s)	146, 301
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	107, 115, 613, 635
MalI	GATC	5 cut(s)	10, 242, 375, 519, 726
MboI	GATC	5 cut(s)	8, 240, 373, 517, 724
MboII	GAAGA	4 cut(s)	242, 559, 578, 595
MflI	RGATCY	2 cut(s)	8, 517
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	6 cut(s)	306, 389, 428, 587, 662, 763
MlyI	GAGTC	4 cut(s)	107, 123, 395, 486
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	8 cut(s)	140, 254, 257, 370, 508, 592, 652, 759
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	4 cut(s)	126, 380, 696, 714
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	2 cut(s)	15, 690
MspI	CCGG	3 cut(s)	102, 227, 395
NcoI	CCATGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	729
NdeII	GATC	5 cut(s)	8, 240, 373, 517, 724
NlaIII	CATG	4 cut(s)	62, 154, 289, 408
NlaIV	GGNNCC	4 cut(s)	10, 145, 472, 721
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	3 cut(s)	107, 115, 635
NspV	TTCGAA	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	136, 316
PleI	GAGTC	4 cut(s)	106, 122, 395, 486
PpsI	GAGTC	4 cut(s)	106, 122, 395, 486
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
PspN4I	GGNNCC	4 cut(s)	10, 145, 472, 721
PspPI	GGNCC	2 cut(s)	224, 470
PspPPI	RGGWCCY	1 cut(s)	470
PspXI	VCTCGAGB	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	8, 517
PsyI	GACNNNGTC	1 cut(s)	255
RsaI	GTAC	3 cut(s)	45, 77, 188
RsaNI	GTAC	3 cut(s)	44, 76, 187
RseI	CAYNNNNRTG	1 cut(s)	149
Rsr2I	CGGWCCG	1 cut(s)	224
RsrII	CGGWCCG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	126, 380, 696, 714
SatI	GCNGC	2 cut(s)	135, 315
Sau3AI	GATC	5 cut(s)	8, 240, 373, 517, 724
Sau96I	GGNCC	2 cut(s)	224, 470
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	4 cut(s)	107, 123, 395, 486
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	6 cut(s)	58, 96, 132, 139, 240, 472
Sfr274I	CTCGAG	1 cut(s)	95
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	2 cut(s)	224, 470
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	95, 750
SmoI	CTYRAG	2 cut(s)	95, 750
Sse9I	AATT	6 cut(s)	306, 389, 428, 587, 662, 763
SsiI	CCGC	2 cut(s)	15, 690
SspMI	CTAG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	285
TaqI	TCGA	5 cut(s)	96, 458, 513, 593, 743
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	6 cut(s)	306, 389, 428, 587, 662, 763
TatI	WGTACW	2 cut(s)	43, 186
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	4 cut(s)	126, 380, 696, 714
Tru9I	TTAA	4 cut(s)	126, 380, 696, 714
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	3 cut(s)	107, 115, 635
TseI	GCWGC	2 cut(s)	134, 314
Tsp45I	GTSAC	3 cut(s)	107, 115, 635
TspDTI	ATGAA	3 cut(s)	167, 543, 596
TspRI	CASTG	1 cut(s)	183
Tth111I	GACNNNGTC	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	224, 470
XapI	RAATTY	4 cut(s)	306, 428, 587, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.