Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Reverse (-)

49226864 .. 49228717

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCAGCATCCAACACAGAGAAGCACTTTGTTCTAGTCCATGGTGCAGGCCATGGAGCTTGGTGTTGGTACAAAATCAAGCCAAGGCTGGAGTCCGCCGGTCACAAGGTCACGGCCCTCAATAATGCCGCTTCAGGCATCGACACCAAGTCCCTAGAAGATGTTCATTCACTAGAAGAGTACTCTGAGCCCTTGCTTCAGTTTATCGGATCACTTGGTCCACAAGAAAAGGTGATCCTTGTAGGTCACAGCCTTGGGGGCATGAACTTGGCTGTTGCCATGGACAAGTTCCCTGAGAAAATTTCTGCTGCTGTTTTCCTGGCTGCTTTTCTGCCAGATACCACACACCACCCATGGTATATTGTAGATCAGTTCATGCAACAATTACCATTAGACAGATGGTTGGACACCCAGTTTGGACAGTTTGGAGAAGAACCCTTTGCTTCATTTCATTTCGGTCCCAAGTTCTTGGCAACAAGTCTCTATCAACTCAGCCCCATTGAGGATATTGAACTCGCCAAGAGTCTAGTAAGGAAGAGTTCCTTCTTTCGTGAACAAGTGTGTAAGACGAAGAACTTCTCAAATGAGGGTTATGGATCGGTTACAAGAGTTTATGCAGTTTGTGAGAAGGACATGGTAATAACCAAGGAATTTCAGCATTGGATGATTCAAAATAGTGGGGTTAAAGATGTGGTGGAGATCAAGGGAGCTGATCATATGCCAATGTTTTCAAAGCCACAAGAACTTTCCAATTCTCTTCTAGAGATAGCACAGAAGTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

261

Amino Acids

29.35

Weight (kDa)

5.99

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	6 - 116	1.5e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	9 - 246	2.9e-22	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	10 - 249	2.8e-22	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 129
AclWI	GGATC	3 cut(s)	217, 229, 604
AcsI	RAATTY	2 cut(s)	300, 650
AcuI	CTGAAG	2 cut(s)	117, 182
AfaI	GTAC	3 cut(s)	71, 182, 779
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	512, 671, 732
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	2 cut(s)	59, 710
AluI	AGCT	2 cut(s)	59, 710
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	3 cut(s)	217, 229, 604
AoxI	GGCC	2 cut(s)	49, 114
ApeKI	GCWGC	2 cut(s)	308, 323
ApoI	RAATTY	2 cut(s)	300, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	2 cut(s)	162, 575
AspS9I	GGNCC	3 cut(s)	115, 218, 458
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	218, 458
BanII	GRGCYC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	295, 310
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	5 cut(s)	35, 155, 173, 527, 761
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	3 cut(s)	129, 309, 324
BlsI	GCNGC	3 cut(s)	130, 310, 325
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	218, 458
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	115, 218, 458
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	1 cut(s)	320
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	17, 147
BmuI	ACTGGG	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	110
BsaJI	CCNNGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
BseGI	GGATG	2 cut(s)	8, 669
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	177, 285, 505
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	295, 310
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	51, 116
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	136, 444
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	136, 444
BsnI	GGCC	2 cut(s)	51, 116
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
Bsp19I	CCATGG	4 cut(s)	40, 52, 279, 353
BspACI	CCGC	2 cut(s)	96, 129
BspANI	GGCC	2 cut(s)	51, 116
BspCNI	CTCAG	3 cut(s)	178, 286, 504
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	217, 229, 604
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
BssMI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
BssT1I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	3 cut(s)	171, 530, 762
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	186, 294, 491
BstDSI	CCRYGG	4 cut(s)	40, 52, 279, 353
BstF5I	GGATG	2 cut(s)	8, 669
BstKTI	GATC	6 cut(s)	212, 237, 370, 599, 702, 715
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	295, 310
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	51, 116
BtgI	CCRYGG	4 cut(s)	40, 52, 279, 353
BtsCI	GGATG	2 cut(s)	8, 669
Cac8I	GCNNGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	115, 218, 458
Csp6I	GTAC	3 cut(s)	70, 181, 778
CviAII	CATG	7 cut(s)	41, 53, 262, 280, 354, 376, 634
CviQI	GTAC	3 cut(s)	70, 181, 778
DdeI	CTNAG	3 cut(s)	186, 294, 491
DpnI	GATC	6 cut(s)	211, 236, 369, 598, 701, 714
DpnII	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	171, 530, 762
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	3 cut(s)	171, 530, 762
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	218, 458
Eco57I	CTGAAG	2 cut(s)	117, 182
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
FaeI	CATG	7 cut(s)	44, 56, 265, 283, 357, 379, 637
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	2 cut(s)	136, 444
FatI	CATG	7 cut(s)	40, 52, 261, 279, 353, 375, 633
FauNDI	CATATG	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	129, 309, 324
FokI	GGATG	1 cut(s)	676
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	3 cut(s)	129, 309, 324
FspBI	CTAG	5 cut(s)	35, 155, 173, 527, 761
GluI	GCNGC	3 cut(s)	129, 309, 324
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	51, 116
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	7 cut(s)	44, 56, 265, 283, 357, 379, 637
HinfI	GANTC	3 cut(s)	92, 523, 667
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	221, 554, 780
Hpy188I	TCNGA	2 cut(s)	187, 209
Hpy188III	TCNNGA	2 cut(s)	551, 761
Hpy8I	GTNNAC	3 cut(s)	221, 554, 780
HpyAV	CCTTC	2 cut(s)	553, 622
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	47, 379, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	186, 294, 491
Hsp92II	CATG	7 cut(s)	44, 56, 265, 283, 357, 379, 637
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
LmnI	GCTCC	2 cut(s)	56, 707
LpnPI	CCDG	9 cut(s)	33, 74, 112, 120, 305, 306, 332, 348, 425
Lsp1109I	GCAGC	2 cut(s)	295, 310
LweI	GCATC	2 cut(s)	17, 147
MaeI	CTAG	5 cut(s)	35, 155, 173, 527, 761
MaeIII	GTNAC	4 cut(s)	101, 109, 245, 601
MalI	GATC	6 cut(s)	211, 236, 369, 598, 701, 714
MboI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
MboII	GAAGA	6 cut(s)	170, 188, 443, 547, 583, 749
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	4 cut(s)	300, 383, 650, 751
MlyI	GAGTC	2 cut(s)	101, 532
MmeI	TCCRAC	2 cut(s)	36, 384
MnlI	CCTC	3 cut(s)	128, 496, 580
MroXI	GAANNNNTTC	2 cut(s)	162, 575
MseI	TTAA	2 cut(s)	684, 784
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	4 cut(s)	40, 52, 279, 353
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
NlaIII	CATG	7 cut(s)	44, 56, 265, 283, 357, 379, 637
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	101, 109, 245
PdmI	GAANNNNTTC	2 cut(s)	162, 575
PfeI	GAWTC	1 cut(s)	667
PkrI	GCNGC	3 cut(s)	130, 310, 325
PleI	GAGTC	2 cut(s)	100, 531
PpsI	GAGTC	2 cut(s)	100, 531
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	115, 218, 458
RsaI	GTAC	3 cut(s)	71, 182, 779
RsaNI	GTAC	3 cut(s)	70, 181, 778
SaqAI	TTAA	2 cut(s)	684, 784
SatI	GCNGC	3 cut(s)	129, 309, 324
Sau3AI	GATC	6 cut(s)	209, 234, 367, 596, 699, 712
Sau96I	GGNCC	3 cut(s)	115, 218, 458
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	101, 532
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	61, 111, 234, 247, 712
SfaNI	GCATC	2 cut(s)	17, 147
SinI	GGWCC	2 cut(s)	218, 458
Sse9I	AATT	4 cut(s)	300, 383, 650, 751
SsiI	CCGC	2 cut(s)	96, 129
SspMI	CTAG	5 cut(s)	35, 155, 173, 527, 761
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	7 cut(s)	40, 52, 83, 253, 279, 353, 645
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	4 cut(s)	300, 383, 650, 751
TatI	WGTACW	2 cut(s)	180, 777
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	2 cut(s)	684, 784
Tru9I	TTAA	2 cut(s)	684, 784
TseFI	GTSAC	3 cut(s)	101, 109, 245
TseI	GCWGC	2 cut(s)	308, 323
Tsp45I	GTSAC	3 cut(s)	101, 109, 245
TspDTI	ATGAA	5 cut(s)	155, 278, 364, 435, 440
VpaK11BI	GGWCC	2 cut(s)	218, 458
XapI	RAATTY	2 cut(s)	300, 650
XbaI	TCTAGA	1 cut(s)	760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	2 cut(s)	162, 575
XspI	CTAG	5 cut(s)	35, 155, 173, 527, 761
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.