Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002337

Physical Location & Seq

Genomic Coordinates Forward (+)

12828590 .. 12839328

Gene Structure 10739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG081100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCAGCATCCAACACAGAGAAGCACTTTGTTCTAGTCCATGGTGCAGGCCATGGAGCTTGGTGTTGGTACAAAATCAAGCCAAGGCTGGAGTCCGCCGGTCACAAGGTCACGGCCCTCGATAATGCCGCTTCAGGCATCGACACCAAGTCCCTAGAAGATGTTCATTCACTAGAAGAGTACTCTGAGCCTTTGCTTCAGTTTATGGGATCACTTGGTCCACAAGAAAAGGTGATCCTTGTAGGTCACAGCCTTGGGGGCTTTAACTTGTCTGTTGCCATGGAGAAGTTCCCTGAGAAAATTTCTGCTGCTGTTTTCCTGACTGCTTTTCTGCCCGATACCACACACCACCCATGGTATATTGTAGATCAGTTCCAGCAAAAATTACCATTAGACAGATGGTTGGACACTCAGTTTGGACAATTTGGAGAAGAACCCTTTGCTTCAATTCATTTCGGTCCCAAGTTCTTGGCAACAAATCTCTATCAACTTAGCCCCATTGAGCCTAGAAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009696 GO:0009814 GO:0009817 GO:0009987 GO:0010817 GO:0016137 GO:0016139 GO:0016787 GO:0016788 GO:0016829 GO:0016830 GO:0016832 GO:0016999 GO:0017144 GO:0018958 GO:0019752 GO:0032787 GO:0042445 GO:0042537 GO:0043207 GO:0043436 GO:0044237 GO:0044281 GO:0045087 GO:0046593 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:0080031 GO:0080032 GO:0098542 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

172

Amino Acids

19.27

Weight (kDa)

5.8

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	6 - 114	9.8e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	9 - 132	9.9e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	10 - 137	1.1e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23590 AT2G23600 AT2G23600 AT2G23600 AT2G23610 AT2G23610 AT2G23620
fragaria_vesca	FvH4_1g14820
malus_domestica	MD02G1161400.v1.1 MD02G1161600.v1.1 MD15G1275500.v1.1 MD15G1275800.v1.1
prunus_persica	Prupe.7G142100_v2.0.a1 Prupe.7G142200_v2.0.a1 Prupe.7G142200_v2.0.a1
pyrus_communis	pycom02g12750 pycom15g23850 pycom15g23860
rosa_chinensis	RchiOBHm_Chr1g0329881 RchiOBHm_Chr2g0103791
rosa_laevigata	RLG00000017260 RLG00000017263 RLG00000029860
rosa_multiflora	Rmu_sc0000112.1_g000011 Rmu_sc0000112.1_g000026 Rmu_sc0002081.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139360 Rroxscaffold_2G00139380 Rroxscaffold_4G00320540 Rroxscaffold_7G00215680
rosa_rugosa	Rorug01G0084000 Rorug02G0117300
rosa_samantha	Rh1AG101900 Rh1BG081100 Rh1CG097400 Rh1DG105000 Rh2AG166300 Rh2BG173500 Rh2CG172200 Rh2DG171700
rosa_wichuraiana	Rw1G008060 Rw1G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 129
AclWI	GGATC	2 cut(s)	217, 229
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	117, 182
AfaI	GTAC	2 cut(s)	71, 182
AgsI	TTSAA	1 cut(s)	447
AhdI	GACNNNNNGTC	1 cut(s)	148
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	2 cut(s)	217, 229
AoxI	GGCC	2 cut(s)	49, 114
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	115, 218, 458
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	218, 458
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	129
BfaI	CTAG	5 cut(s)	35, 155, 173, 507, 517
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	2 cut(s)	129, 309
BlsI	GCNGC	2 cut(s)	130, 310
BmcAI	AGTACT	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	218, 458
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	115, 218, 458
BmiI	GGNNCC	1 cut(s)	460
BmsI	GCATC	2 cut(s)	17, 147
BpmI	CTGGAG	1 cut(s)	110
BsaJI	CCNNGG	6 cut(s)	40, 52, 83, 253, 279, 353
Bse118I	RCCGGY	1 cut(s)	98
BseDI	CCNNGG	6 cut(s)	40, 52, 83, 253, 279, 353
BseGI	GGATG	1 cut(s)	8
BseMII	CTCAG	3 cut(s)	177, 285, 425
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	51, 116
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	136, 444
BsmFI	GGGAC	2 cut(s)	136, 444
BsnI	GGCC	2 cut(s)	51, 116
Bsp143I	GATC	3 cut(s)	209, 234, 367
Bsp19I	CCATGG	4 cut(s)	40, 52, 279, 353
BspACI	CCGC	2 cut(s)	96, 129
BspANI	GGCC	2 cut(s)	51, 116
BspCNI	CTCAG	3 cut(s)	178, 286, 424
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	2 cut(s)	217, 229
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	6 cut(s)	40, 52, 83, 253, 279, 353
BssMI	GATC	3 cut(s)	209, 234, 367
BssT1I	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 353
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	4 cut(s)	186, 294, 411, 491
BstDSI	CCRYGG	4 cut(s)	40, 52, 279, 353
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	212, 237, 370
BstMBI	GATC	3 cut(s)	209, 234, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	51, 116
BtgI	CCRYGG	4 cut(s)	40, 52, 279, 353
BtsCI	GGATG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	115, 218, 458
Csp6I	GTAC	2 cut(s)	70, 181
CviAII	CATG	4 cut(s)	41, 53, 280, 354
CviQI	GTAC	2 cut(s)	70, 181
DdeI	CTNAG	4 cut(s)	186, 294, 411, 491
DpnI	GATC	3 cut(s)	211, 236, 369
DpnII	GATC	3 cut(s)	209, 234, 367
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 353
Eco47I	GGWCC	2 cut(s)	218, 458
Eco57I	CTGAAG	2 cut(s)	117, 182
EcoT14I	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 353
ErhI	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 353
FaeI	CATG	4 cut(s)	44, 56, 283, 357
FaiI	YATR	6 cut(s)	42, 54, 206, 281, 355, 360
FaqI	GGGAC	2 cut(s)	136, 444
FatI	CATG	4 cut(s)	40, 52, 279, 353
Fnu4HI	GCNGC	2 cut(s)	129, 309
Fsp4HI	GCNGC	2 cut(s)	129, 309
FspBI	CTAG	5 cut(s)	35, 155, 173, 507, 517
GluI	GCNGC	2 cut(s)	129, 309
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	51, 116
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	4 cut(s)	44, 56, 283, 357
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	4 cut(s)	186, 294, 411, 491
Hsp92II	CATG	4 cut(s)	44, 56, 283, 357
Kzo9I	GATC	3 cut(s)	209, 234, 367
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	33, 74, 112, 120, 306, 332, 389
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	17, 147
MaeI	CTAG	5 cut(s)	35, 155, 173, 507, 517
MaeIII	GTNAC	3 cut(s)	101, 109, 245
MalI	GATC	3 cut(s)	211, 236, 369
MboI	GATC	3 cut(s)	209, 234, 367
MboII	GAAGA	3 cut(s)	170, 188, 443
MluCI	AATT	4 cut(s)	300, 383, 422, 447
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	36, 384
MnlI	CCTC	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	4 cut(s)	40, 52, 279, 353
NdeII	GATC	3 cut(s)	209, 234, 367
NlaIII	CATG	4 cut(s)	44, 56, 283, 357
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	101, 109, 245
PdmI	GAANNNNTTC	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	130, 310
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	115, 218, 458
RsaI	GTAC	2 cut(s)	71, 182
RsaNI	GTAC	2 cut(s)	70, 181
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	129, 309
Sau3AI	GATC	3 cut(s)	209, 234, 367
Sau96I	GGNCC	3 cut(s)	115, 218, 458
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	1 cut(s)	101
SetI	ASST	4 cut(s)	61, 111, 234, 247
SfaNI	GCATC	2 cut(s)	17, 147
SinI	GGWCC	2 cut(s)	218, 458
Sse9I	AATT	4 cut(s)	300, 383, 422, 447
SsiI	CCGC	2 cut(s)	96, 129
SspMI	CTAG	5 cut(s)	35, 155, 173, 507, 517
StyI	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 353
TaqI	TCGA	2 cut(s)	120, 141
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	4 cut(s)	300, 383, 422, 447
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseFI	GTSAC	3 cut(s)	101, 109, 245
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	3 cut(s)	101, 109, 245
TspDTI	ATGAA	2 cut(s)	155, 440
VpaK11BI	GGWCC	2 cut(s)	218, 458
XapI	RAATTY	1 cut(s)	300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	5 cut(s)	35, 155, 173, 507, 517
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.