AT2G24765
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002882
Physical Location & Seq
Forward (+)
10562688 .. 10565296
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24765.1

Sequence Viewer

Length: 549 bp
ATGGGAATCTTATTCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTCTCGACAATGCTGGAAAAACCACAATCCTCTATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGGTCTGGGATTTAGGTGGACAAACAAGCATCAGGCCATACTGGCGATGCTATTTCCCGAATACACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAA

Protein Analysis

182

Amino Acids

20.24

Weight (kDa)

5.24

Isoelectric Point (pI)

25.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 5 - 176 2.4e-79 ADP-ribosylation factor family
SRPRB PF09439 16 - 152 3.3e-11 Signal recognition particle receptor beta subunit
Roc PF08477 19 - 129 2.3e-13 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 19 - 163 6.6e-10 Ras family
Gtr1_RagA PF04670 19 - 130 1.5e-08 Gtr1/RagA G protein conserved region
G-alpha PF00503 44 - 130 2.2e-09 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 19
AciI CCGC 3 cut(s) 19, 356, 410
AclI AACGTT 1 cut(s) 156
AclWI GGATC 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 3 cut(s) 349, 469, 532
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 3 cut(s) 77, 133, 155
Alw44I GTGCAC 1 cut(s) 396
AlwI GGATC 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 1 cut(s) 224
ApaLI GTGCAC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 393
AvaI CYCGRG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 400
BccI CCATC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 3 cut(s) 77, 133, 155
BglI GCCNNNNNGGC 1 cut(s) 232
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 227, 228, 397
BpuMI CCSGG 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 67, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 236, 518
BseDI CCNNGG 2 cut(s) 67, 426
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 236, 518
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 3 cut(s) 77, 133, 155
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 1 cut(s) 226
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 264, 385
BspACI CCGC 3 cut(s) 19, 356, 410
BspANI GGCC 1 cut(s) 226
BspFNI CGCG 1 cut(s) 19
BspPI GGATC 1 cut(s) 393
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 236, 518
BssECI CCNNGG 2 cut(s) 67, 426
BssMI GATC 2 cut(s) 264, 385
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 34
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 19
BstKTI GATC 2 cut(s) 267, 388
BstMAI GTCTC 3 cut(s) 77, 133, 155
BstMBI GATC 2 cut(s) 264, 385
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 400
BstUI CGCG 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 27
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 323
CviJI RGCY 6 cut(s) 53, 109, 226, 413, 425, 546
CviKI_1 RGCY 6 cut(s) 53, 109, 226, 413, 425, 546
CviQI GTAC 1 cut(s) 172
DpnI GATC 2 cut(s) 266, 387
DpnII GATC 2 cut(s) 264, 385
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 326
FaiI YATR 4 cut(s) 229, 270, 324, 438
FaqI GGGAC 1 cut(s) 507
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 226
HapII CCGG 1 cut(s) 393
Hin1II CATG 1 cut(s) 326
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 6 cut(s) 6, 57, 136, 278, 297, 448
HpaII CCGG 1 cut(s) 393
Hpy166II GTNNAC 3 cut(s) 209, 277, 398
Hpy188I TCNGA 3 cut(s) 114, 141, 366
Hpy188III TCNNGA 3 cut(s) 74, 247, 537
Hpy8I GTNNAC 3 cut(s) 209, 277, 398
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 5 cut(s) 169, 326, 374, 398, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 2 cut(s) 264, 385
LpnPI CCDG 8 cut(s) 69, 176, 181, 208, 217, 368, 406, 499
LweI GCATC 3 cut(s) 227, 228, 397
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 41, 415
MalI GATC 2 cut(s) 266, 387
MboI GATC 2 cut(s) 264, 385
MboII GAAGA 4 cut(s) 21, 350, 380, 457
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 2 cut(s) 327, 344
MlyI GAGTC 2 cut(s) 272, 457
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 7 cut(s) 71, 77, 110, 307, 328, 484, 496
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 232
NciI CCSGG 1 cut(s) 393
NdeII GATC 2 cut(s) 264, 385
NlaIII CATG 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 280
PfeI GAWTC 4 cut(s) 6, 57, 136, 297
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 2 cut(s) 272, 456
PpsI GAGTC 2 cut(s) 272, 456
Psp1406I AACGTT 1 cut(s) 156
PspXI VCTCGAGB 1 cut(s) 280
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 264, 385
SchI GAGTC 2 cut(s) 272, 457
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 400
SetI ASST 5 cut(s) 55, 159, 195, 208, 355
SfaNI GCATC 3 cut(s) 227, 228, 397
Sfr274I CTCGAG 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 2 cut(s) 327, 344
SsiI CCGC 3 cut(s) 19, 356, 410
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 159
TaqI TCGA 5 cut(s) 55, 75, 281, 402, 501
TaqII GACCGA 1 cut(s) 59
TasI AATT 2 cut(s) 327, 344
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 4 cut(s) 6, 57, 136, 297
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 267
TspDTI ATGAA 2 cut(s) 311, 357
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 267
VneI GTGCAC 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.