Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Reverse (-)

11235102 .. 11238442

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1144600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGGTGGAGACGGAGCCTGTGACGGTGCCGGAGCTGGCCCTTTCTGATACTGACATCAACTGGGACAGGTTGGACAAGACAAGGTTTCACATTATCGGGGCTATTCTCTTCACAGCTCAGTCGGCCTTGCTACATCCAACAGCAGTTGTAAAGACTAGAATGCAAGTAGCTGGTTCTGGACTCTCTCACATGAGTGGAATATCAGTATTTAGACATATATTAAAATGTGATGGCATCCCCGGCATATTTAGAGGTTTTGGCACATCTGCCATTGGATCGTTGCCCGGTAGGGTCTTGGCTTTGACATCACTTGAAGTATCAAAGGATATGATGTTGAAATACACTGATGGTCTAGACATGCCTGAGGCTACACGTGTTGGCATTGCTAATGGTGTGGCGGGAATGTCCTCAAATTTAGTTTCTTGTGTGTACTATGTGCCTTTGGATGTGATATGCCAAAGACTAATGGTGCAAGGACTTCCTGGGACTACATCCTGCAACAAACCATTTGATGTTATACAGAATGTGAAAAAGGCTGAAGGTCTTCGTGGATTGTACAGAGGCTTCGGATTAACAGCTCTGACCCAGTCACCAGCAAATGCACTTTGGTGGGGTGCCTATGGTTCTGCACAGCACATGATCTGGAGGAGTTTGGGCTATAGAGACGATGCAGAGAAGAAACCGTCTCATATGGAGATGGTGACAGTTCAGGCTTCAGCCGGCATGATGGCTGGTGCTTGTTCCTCTATTATCACTACTCCTATTGACACAGTCAAGACACGACTTCAGGTCATGGATAACTATGGTGCTGGGAGACCATCAGTACTGAAAACGTCAAAGACACTCCTTAAAGAGGATGGATGGCGGGGATTTTATAGAGGTTTTGGTCCAAGGTTCTTAAATATGTCACTCTATGGAACTACAATGATCGTTACTTACGAATTGATAAAGAGATTATCTGTAAGGGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

326

Amino Acids

35.38

Weight (kDa)

9.25

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 115	5.9e-13	Mitochondrial carrier protein
Mito_carr	PF00153	130 - 217	3.8e-16	Mitochondrial carrier protein
Mito_carr	PF00153	237 - 322	1.7e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	28, 617
AciI	CCGC	3 cut(s)	5, 401, 868
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	3 cut(s)	561, 702, 773
AcvI	CACGTG	1 cut(s)	377
AfaI	GTAC	3 cut(s)	434, 560, 828
AfiI	CCNNNNNNNGG	1 cut(s)	856
AflIII	ACRYGT	2 cut(s)	374, 376
AgsI	TTSAA	2 cut(s)	317, 340
AhdI	GACNNNNNGTC	1 cut(s)	791
AjnI	CCWGG	1 cut(s)	484
AleI	CACNNNNGTG	2 cut(s)	195, 610
AluBI	AGCT	4 cut(s)	37, 119, 173, 581
AluI	AGCT	4 cut(s)	37, 119, 173, 581
Alw26I	GTCTC	4 cut(s)	5, 660, 693, 811
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	39, 126
ApoI	RAATTY	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	40, 890
AsuC2I	CCSGG	2 cut(s)	243, 288
AsuHPI	GGTGA	2 cut(s)	585, 715
AvaII	GGWCC	1 cut(s)	890
AxyI	CCTNAGG	1 cut(s)	366
BanI	GGYRCC	2 cut(s)	28, 617
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BbrPI	CACGTG	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	539
BccI	CCATC	7 cut(s)	227, 344, 694, 724, 829, 854, 858
BciT130I	CCWGG	1 cut(s)	486
BcnI	CCSGG	2 cut(s)	243, 288
BcoDI	GTCTC	4 cut(s)	5, 660, 693, 811
BfaI	CTAG	2 cut(s)	159, 356
BfmI	CTRYAG	1 cut(s)	661
BmcAI	AGTACT	1 cut(s)	828
Bme1390I	CCNGG	3 cut(s)	243, 288, 486
Bme18I	GGWCC	1 cut(s)	890
BmeRI	GACNNNNNGTC	1 cut(s)	791
BmgT120I	GGNCC	2 cut(s)	40, 890
BmiI	GGNNCC	3 cut(s)	18, 30, 619
BmrFI	CCNGG	3 cut(s)	243, 288, 486
BmrI	ACTGGG	2 cut(s)	73, 583
BmsI	GCATC	2 cut(s)	246, 661
BmuI	ACTGGG	2 cut(s)	73, 583
BpiI	GAAGAC	1 cut(s)	539
BpmI	CTGGAG	1 cut(s)	667
BpuMI	CCSGG	2 cut(s)	243, 288
BsaAI	YACGTR	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	811
BsaJI	CCNNGG	3 cut(s)	241, 485, 893
Bsc4I	CCNNNNNNNGG	1 cut(s)	856
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	2 cut(s)	68, 589
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	3 cut(s)	241, 485, 893
BseGI	GGATG	6 cut(s)	136, 237, 454, 494, 865, 869
BseLI	CCNNNNNNNGG	1 cut(s)	856
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	134, 357
BseNI	ACTGG	2 cut(s)	68, 589
BseRI	GAGGAG	1 cut(s)	664
BseYI	CCCAGC	1 cut(s)	812
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	41, 128
BshNI	GGYRCC	2 cut(s)	28, 617
BsiSI	CCGG	4 cut(s)	32, 243, 288, 723
BslFI	GGGAC	2 cut(s)	80, 502
BslI	CCNNNNNNNGG	1 cut(s)	856
BsmAI	GTCTC	4 cut(s)	5, 660, 693, 811
BsmBI	CGTCTC	3 cut(s)	5, 660, 693
BsmFI	GGGAC	2 cut(s)	80, 502
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	41, 128
Bso31I	GGTCTC	1 cut(s)	811
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	278, 642, 930
BspACI	CCGC	3 cut(s)	5, 401, 868
BspANI	GGCC	2 cut(s)	41, 128
BspCNI	CTCAG	2 cut(s)	133, 358
BspLI	GGNNCC	3 cut(s)	18, 30, 619
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	2 cut(s)	28, 617
BspTNI	GGTCTC	1 cut(s)	811
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	722
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	68, 589
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	241, 485, 893
BssMI	GATC	3 cut(s)	278, 642, 930
BssT1I	CCWWGG	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	4 cut(s)	28, 687, 709, 775
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	39, 724
BstDEI	CTNAG	2 cut(s)	120, 366
BstENI	CCTNNNNNAGG	1 cut(s)	854
BstF5I	GGATG	6 cut(s)	136, 237, 454, 494, 865, 869
BstKTI	GATC	3 cut(s)	281, 645, 933
BstMAI	GTCTC	4 cut(s)	5, 660, 693, 811
BstMBI	GATC	3 cut(s)	278, 642, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 243
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	3 cut(s)	241, 286, 484
BstSFI	CTRYAG	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	539
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	41, 128
BtsCI	GGATG	6 cut(s)	136, 237, 454, 494, 865, 869
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	39, 724
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	2 cut(s)	40, 890
Csp6I	GTAC	3 cut(s)	433, 559, 827
CviAII	CATG	5 cut(s)	193, 361, 640, 727, 796
CviQI	GTAC	3 cut(s)	433, 559, 827
DdeI	CTNAG	2 cut(s)	120, 366
DpnI	GATC	3 cut(s)	280, 644, 932
DpnII	GATC	3 cut(s)	278, 642, 930
DriI	GACNNNNNGTC	1 cut(s)	791
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	893
Eco31I	GGTCTC	1 cut(s)	811
Eco47I	GGWCC	1 cut(s)	890
Eco57I	CTGAAG	3 cut(s)	561, 702, 773
Eco72I	CACGTG	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	854
EcoRII	CCWGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	893
ErhI	CCWWGG	1 cut(s)	893
Esp3I	CGTCTC	3 cut(s)	5, 660, 693
FaeI	CATG	5 cut(s)	196, 364, 643, 730, 799
FaqI	GGGAC	2 cut(s)	80, 502
FatI	CATG	5 cut(s)	192, 360, 639, 726, 795
FauI	CCCGC	2 cut(s)	394, 861
FauNDI	CATATG	1 cut(s)	693
FokI	GGATG	6 cut(s)	123, 224, 461, 481, 872, 876
FspBI	CTAG	2 cut(s)	159, 356
GsaI	CCCAGC	1 cut(s)	816
GsuI	CTGGAG	1 cut(s)	667
HaeIII	GGCC	2 cut(s)	41, 128
HapII	CCGG	4 cut(s)	32, 243, 288, 723
Hin1II	CATG	5 cut(s)	196, 364, 643, 730, 799
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	4 cut(s)	32, 243, 288, 723
HphI	GGTGA	2 cut(s)	585, 715
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	49, 572, 585
Hpy188III	TCNNGA	4 cut(s)	180, 356, 646, 778
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	536, 965
HpyCH4III	ACNGT	4 cut(s)	28, 687, 709, 775
HpyCH4IV	ACGT	2 cut(s)	376, 836
HpyCH4V	TGCA	6 cut(s)	166, 475, 501, 605, 632, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 243
HpyF3I	CTNAG	2 cut(s)	120, 366
HpySE526I	ACGT	2 cut(s)	376, 836
Hsp92II	CATG	5 cut(s)	196, 364, 643, 730, 799
KroI	GCCGGC	1 cut(s)	722
KroNI	GCCGGC	1 cut(s)	724
Kzo9I	GATC	3 cut(s)	278, 642, 930
LmnI	GCTCC	2 cut(s)	16, 34
LweI	GCATC	2 cut(s)	246, 661
MaeI	CTAG	2 cut(s)	159, 356
MaeII	ACGT	2 cut(s)	376, 836
MaeIII	GTNAC	5 cut(s)	22, 591, 703, 909, 934
MalI	GATC	3 cut(s)	280, 644, 932
MboI	GATC	3 cut(s)	278, 642, 930
MboII	GAAGA	3 cut(s)	103, 539, 691
MluCI	AATT	2 cut(s)	415, 944
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	2 cut(s)	54, 164
MnlI	CCTC	8 cut(s)	248, 361, 421, 557, 642, 757, 850, 875
MroNI	GCCGGC	1 cut(s)	722
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	4 cut(s)	224, 575, 852, 902
MslI	CAYNNNNRTG	2 cut(s)	195, 610
MspI	CCGG	4 cut(s)	32, 243, 288, 723
MspR9I	CCNGG	3 cut(s)	243, 288, 486
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	125, 243
NaeI	GCCGGC	1 cut(s)	724
NciI	CCSGG	2 cut(s)	243, 288
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	278, 642, 930
NgoMIV	GCCGGC	1 cut(s)	722
NlaIII	CATG	5 cut(s)	196, 364, 643, 730, 799
NlaIV	GGNNCC	3 cut(s)	18, 30, 619
NmuCI	GTSAC	4 cut(s)	22, 591, 703, 909
NspI	RCATGY	1 cut(s)	364
OliI	CACNNNNGTG	2 cut(s)	195, 610
PcsI	WCGNNNNNNNCGW	1 cut(s)	939
PctI	GAATGC	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	546
PflFI	GACNNNGTC	2 cut(s)	589, 773
PleI	GAGTC	1 cut(s)	177
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	484
PspCI	CACGTG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	812
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	18, 30, 619
PspPI	GGNCC	2 cut(s)	40, 890
PsyI	GACNNNGTC	2 cut(s)	589, 773
RsaI	GTAC	3 cut(s)	434, 560, 828
RsaNI	GTAC	3 cut(s)	433, 559, 827
RseI	CAYNNNNRTG	2 cut(s)	195, 610
SaqAI	TTAA	4 cut(s)	224, 575, 852, 902
Sau3AI	GATC	3 cut(s)	278, 642, 930
Sau96I	GGNCC	2 cut(s)	40, 890
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	3 cut(s)	243, 288, 486
SfaNI	GCATC	2 cut(s)	246, 661
SfcI	CTRYAG	1 cut(s)	661
SinI	GGWCC	1 cut(s)	890
SmiMI	CAYNNNNRTG	2 cut(s)	195, 610
Sse9I	AATT	2 cut(s)	415, 944
SsiI	CCGC	3 cut(s)	5, 401, 868
SspMI	CTAG	2 cut(s)	159, 356
StyD4I	CCNGG	3 cut(s)	241, 286, 484
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	4 cut(s)	28, 687, 709, 775
TaiI	ACGT	2 cut(s)	379, 839
TasI	AATT	2 cut(s)	415, 944
TatI	WGTACW	3 cut(s)	432, 558, 826
Tru1I	TTAA	4 cut(s)	224, 575, 852, 902
Tru9I	TTAA	4 cut(s)	224, 575, 852, 902
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	4 cut(s)	22, 591, 703, 909
Tsp45I	GTSAC	4 cut(s)	22, 591, 703, 909
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	352
Tth111I	GACNNNGTC	2 cut(s)	589, 773
VpaK11BI	GGWCC	1 cut(s)	890
XagI	CCTNNNNNAGG	1 cut(s)	854
XapI	RAATTY	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	2 cut(s)	159, 356
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.