Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Forward (+)

6995463 .. 7008112

Gene Structure 12650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0045000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTCTCCGATAATTCTAGCACCAACGAAGAGCGTCTTCAACAGCTGAAGGCTTTTGACCAATCCAAAGCTGGCGTCAAAGGGATCGTCGACGCCGGAGTCACCAAAATCCCATCGATTTTCTTACACTCGGGTGACGACCACACAAGTTTCAGTTCCAGTCAACCAACTCAAACCCAGTTCAGGATCCCAGTTGTTGACCTAACTGACACTGAGCACAAGCGTGCTGAAGTTGTAGACGGAGTACGGCGGGCCGCAGAGAGCGTAGGGTTCTTCCAGGTGGTGAACCATGGGATACCAAAGAGAGTTTTGGAGGAGATGCTGGAGGCAACACGCGCGTTCCACGAGCTTCCGAGTGAGATGAAGGCTGATTACTACACTAGGGACCCGATGAGGAAAGTCAGGTTCGTTAGCAGCTTTCATCTGTACGAGTCAAGGTCTGCTAATTGGAGGGACAGTCTGTTGTGTGACATGGCTCCCGAGCCTCTTGATCCTCTGGAATTGCCTGCGATTTGCAGAGATATAACTGTTGAATACTCTAACAAAATTTATAAATTGGGACTTACTCTGTTTGAGCTGTTATCTGAGGCTCTTGGACTCAAATCAGACCACCTTCTAGGTTTGGATTGTGCAAATGGATATATTATTCTTGGTCATTACTATCCACCATGTCCTGAACCAGAATTGACCATTGGAACGGACAAACACTCGGATGCTAATTTTCTCACTATCCTACTTCAAGACAATATTGGTGGACTCCAAATTTTGCATGAAAATCAATGGATAGATGTTGCTCCCGTGGATGGATCTGTAATAGTCAACATTGGAGATCTTTTGCAGCTAATCTCAAACGACAAGTTTGTAAGCGTTAATCACAGAGCAGTGACGAAAACCGTAGGTCCAAGAATTTCAGTAGCATGTTTTCTCAGGCATATGTCACTCGAAAGTTTACCAAGACTGTATGAGCCAATTAAGGAGTTGACGTCAGAAGAAAATCCTGCCAAGTACCGGGCAACCAGTGTGAAAGAGTATGTTGGATACCACTATAATAAAGGTATGATTGCTGGAGTCTCCGGACTAGAATATTTGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

365

Amino Acids

40.88

Weight (kDa)

5.56

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	63 - 159	5.2e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	216 - 310	1.6e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AasI	GACNNNNNNGTC	1 cut(s)	98
AatII	GACGTC	1 cut(s)	986
AccI	GTMKAC	2 cut(s)	90, 237
AccII	CGCG	2 cut(s)	336, 338
AccIII	TCCGGA	1 cut(s)	1073
AciI	CCGC	2 cut(s)	250, 255
AclWI	GGATC	5 cut(s)	92, 181, 194, 485, 814
AcsI	RAATTY	3 cut(s)	546, 762, 906
AcuI	CTGAAG	2 cut(s)	68, 249
AcyI	GRCGYC	3 cut(s)	75, 93, 983
AfaI	GTAC	3 cut(s)	246, 428, 1007
AfiI	CCNNNNNNNGG	3 cut(s)	183, 803, 1008
AgsI	TTSAA	4 cut(s)	41, 533, 740, 1090
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AleI	CACNNNNGTG	2 cut(s)	132, 222
AluBI	AGCT	6 cut(s)	46, 71, 349, 417, 577, 841
AluI	AGCT	6 cut(s)	46, 71, 349, 417, 577, 841
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	10, 1075
AlwI	GGATC	5 cut(s)	92, 181, 194, 485, 814
Ama87I	CYCGRG	2 cut(s)	130, 479
Aor13HI	TCCGGA	1 cut(s)	1073
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	414, 838
ApoI	RAATTY	3 cut(s)	546, 762, 906
ArsI	GACNNNNNNTTYG	4 cut(s)	60, 72, 92, 104
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	252, 385, 899
AsuC2I	CCSGG	1 cut(s)	1010
AsuHPI	GGTGA	3 cut(s)	94, 146, 295
AvaI	CYCGRG	2 cut(s)	130, 479
AvaII	GGWCC	2 cut(s)	385, 899
BamHI	GGATCC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BauI	CACGAG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	426, 850
BccI	CCATC	2 cut(s)	121, 797
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	2 cut(s)	288, 1031
BcnI	CCSGG	1 cut(s)	1010
BcoDI	GTCTC	2 cut(s)	10, 1075
BfaI	CTAG	4 cut(s)	18, 381, 617, 1079
BfuI	GTATCC	2 cut(s)	288, 1031
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	3 cut(s)	255, 415, 839
BlsI	GCNGC	3 cut(s)	256, 416, 840
Bme1390I	CCNGG	2 cut(s)	278, 1010
Bme18I	GGWCC	2 cut(s)	385, 899
BmeT110I	CYCGRG	2 cut(s)	130, 479
BmgT120I	GGNCC	3 cut(s)	252, 385, 899
BmiI	GGNNCC	4 cut(s)	188, 386, 387, 477
BmrFI	CCNGG	2 cut(s)	278, 1010
BmrI	ACTGGG	2 cut(s)	172, 185
BmsI	GCATC	2 cut(s)	309, 703
BmuI	ACTGGG	2 cut(s)	172, 185
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	2 cut(s)	344, 1086
BpuMI	CCSGG	1 cut(s)	1010
Bsa29I	ATCGAT	1 cut(s)	116
BsaHI	GRCGYC	3 cut(s)	75, 93, 983
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	289, 798
BsaWI	WCCGGW	1 cut(s)	1073
BsaXI	ACNNNNNCTCC	4 cut(s)	442, 472, 968, 998
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 803, 1008
Bse1I	ACTGG	4 cut(s)	159, 178, 191, 1017
BseAI	TCCGGA	1 cut(s)	1073
BseBI	CCWGG	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	289, 798
BseGI	GGATG	2 cut(s)	718, 808
BseLI	CCNNNNNNNGG	3 cut(s)	183, 803, 1008
BseMII	CTCAG	3 cut(s)	204, 576, 940
BseNI	ACTGG	4 cut(s)	159, 178, 191, 1017
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	426, 850
Bsh1236I	CGCG	2 cut(s)	336, 338
BshFI	GGCC	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	2 cut(s)	130, 479
BsiSI	CCGG	3 cut(s)	96, 1009, 1074
BslFI	GGGAC	3 cut(s)	398, 467, 573
BslI	CCNNNNNNNGG	3 cut(s)	183, 803, 1008
BsmAI	GTCTC	2 cut(s)	10, 1075
BsmFI	GGGAC	3 cut(s)	398, 467, 573
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	2 cut(s)	130, 479
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	1073
Bsp143I	GATC	5 cut(s)	84, 186, 490, 806, 829
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	2 cut(s)	250, 255
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	3 cut(s)	205, 577, 939
BspDI	ATCGAT	1 cut(s)	116
BspEI	TCCGGA	1 cut(s)	1073
BspFNI	CGCG	2 cut(s)	336, 338
BspLI	GGNNCC	4 cut(s)	188, 386, 387, 477
BspPI	GGATC	5 cut(s)	92, 181, 194, 485, 814
BspQI	GCTCTTC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	4 cut(s)	159, 178, 191, 1017
BssECI	CCNNGG	2 cut(s)	289, 798
BssMI	GATC	5 cut(s)	84, 186, 490, 806, 829
BssNI	GRCGYC	3 cut(s)	75, 93, 983
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	4 cut(s)	458, 529, 895, 960
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	3 cut(s)	75, 93, 983
BstC8I	GCNNGC	4 cut(s)	73, 225, 252, 507
BstDEI	CTNAG	3 cut(s)	213, 585, 926
BstDSI	CCRYGG	2 cut(s)	289, 798
BstF5I	GGATG	2 cut(s)	718, 808
BstFNI	CGCG	2 cut(s)	336, 338
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	87, 189, 493, 809, 832
BstMAI	GTCTC	2 cut(s)	10, 1075
BstMBI	GATC	5 cut(s)	84, 186, 490, 806, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	921
BstSCI	CCNGG	2 cut(s)	276, 1008
BstUI	CGCG	2 cut(s)	336, 338
BstV1I	GCAGC	2 cut(s)	426, 850
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	3 cut(s)	186, 806, 829
BstYI	RGATCY	3 cut(s)	186, 806, 829
Bsu15I	ATCGAT	1 cut(s)	116
BsuI	GTATCC	2 cut(s)	288, 1031
BsuRI	GGCC	1 cut(s)	254
BsuTUI	ATCGAT	1 cut(s)	116
BtgI	CCRYGG	2 cut(s)	289, 798
BtsCI	GGATG	2 cut(s)	718, 808
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	3 cut(s)	210, 888, 1024
Cac8I	GCNNGC	4 cut(s)	73, 225, 252, 507
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	3 cut(s)	252, 385, 899
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	3 cut(s)	23, 64, 101
Csp6I	GTAC	3 cut(s)	245, 427, 1006
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	5 cut(s)	290, 472, 669, 770, 918
CviQI	GTAC	3 cut(s)	245, 427, 1006
DdeI	CTNAG	3 cut(s)	213, 585, 926
DpnI	GATC	5 cut(s)	86, 188, 492, 808, 831
DpnII	GATC	5 cut(s)	84, 186, 490, 806, 829
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	385, 899
Eco57I	CTGAAG	2 cut(s)	68, 249
Eco88I	CYCGRG	2 cut(s)	130, 479
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	5 cut(s)	293, 475, 672, 773, 921
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	3 cut(s)	398, 467, 573
FatI	CATG	5 cut(s)	289, 471, 668, 769, 917
FauI	CCCGC	1 cut(s)	243
FauNDI	CATATG	1 cut(s)	933
FblI	GTMKAC	2 cut(s)	90, 237
Fnu4HI	GCNGC	3 cut(s)	255, 415, 839
FokI	GGATG	2 cut(s)	725, 815
Fsp4HI	GCNGC	3 cut(s)	255, 415, 839
FspBI	CTAG	4 cut(s)	18, 381, 617, 1079
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	255, 415, 839
GsuI	CTGGAG	2 cut(s)	344, 1086
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	3 cut(s)	96, 1009, 1074
HgaI	GACGC	3 cut(s)	23, 64, 101
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	3 cut(s)	75, 93, 983
Hin1II	CATG	5 cut(s)	293, 475, 672, 773, 921
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	5 cut(s)	91, 164, 199, 820, 981
HindII	GTYRAC	5 cut(s)	91, 164, 199, 820, 981
HinfI	GANTC	5 cut(s)	99, 431, 597, 756, 1068
HpaII	CCGG	3 cut(s)	96, 1009, 1074
HphI	GGTGA	3 cut(s)	94, 146, 295
Hpy166II	GTNNAC	9 cut(s)	91, 164, 199, 238, 286, 755, 820, 950, 981
Hpy188I	TCNGA	6 cut(s)	10, 354, 586, 607, 712, 988
Hpy188III	TCNNGA	7 cut(s)	184, 479, 488, 497, 674, 740, 1074
Hpy8I	GTNNAC	9 cut(s)	91, 164, 199, 238, 286, 755, 820, 950, 981
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	3 cut(s)	43, 358, 623
HpyCH4III	ACNGT	4 cut(s)	458, 529, 895, 960
HpyCH4IV	ACGT	1 cut(s)	983
HpyCH4V	TGCA	4 cut(s)	516, 632, 769, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	213, 585, 926
HpySE526I	ACGT	1 cut(s)	983
Hsp92I	GRCGYC	3 cut(s)	75, 93, 983
Hsp92II	CATG	5 cut(s)	293, 475, 672, 773, 921
HspAI	GCGC	1 cut(s)	336
KflI	GGGWCCC	1 cut(s)	385
Kpn2I	TCCGGA	1 cut(s)	1073
Kzo9I	GATC	5 cut(s)	84, 186, 490, 806, 829
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	481, 799
Lsp1109I	GCAGC	2 cut(s)	426, 850
LweI	GCATC	2 cut(s)	309, 703
MaeI	CTAG	4 cut(s)	18, 381, 617, 1079
MaeII	ACGT	1 cut(s)	983
MaeIII	GTNAC	5 cut(s)	100, 134, 467, 883, 936
MalI	GATC	5 cut(s)	86, 188, 492, 808, 831
MboI	GATC	5 cut(s)	84, 186, 490, 806, 829
MboII	GAAGA	4 cut(s)	29, 41, 265, 1001
MflI	RGATCY	3 cut(s)	186, 806, 829
MhlI	GDGCHC	1 cut(s)	219
MlyI	GAGTC	5 cut(s)	108, 440, 591, 750, 1077
MmeI	TCCRAC	1 cut(s)	1015
MnlI	CCTC	7 cut(s)	307, 319, 387, 444, 495, 504, 580
MroI	TCCGGA	1 cut(s)	1073
MseI	TTAA	2 cut(s)	870, 972
MslI	CAYNNNNRTG	3 cut(s)	132, 222, 711
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	3 cut(s)	96, 1009, 1074
MspR9I	CCNGG	2 cut(s)	278, 1010
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	336, 338
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	1010
NcoI	CCATGG	1 cut(s)	289
NdeI	CATATG	1 cut(s)	933
NdeII	GATC	5 cut(s)	84, 186, 490, 806, 829
NlaIII	CATG	5 cut(s)	293, 475, 672, 773, 921
NlaIV	GGNNCC	4 cut(s)	188, 386, 387, 477
NmuCI	GTSAC	5 cut(s)	100, 134, 467, 883, 936
NspI	RCATGY	1 cut(s)	921
OliI	CACNNNNGTG	2 cut(s)	132, 222
PciSI	GCTCTTC	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	256, 416, 840
PleI	GAGTC	5 cut(s)	107, 439, 591, 750, 1076
PpsI	GAGTC	5 cut(s)	107, 439, 591, 750, 1076
PpuMI	RGGWCCY	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	188, 386, 387, 477
PspPI	GGNCC	3 cut(s)	252, 385, 899
PspPPI	RGGWCCY	1 cut(s)	385
PsuI	RGATCY	3 cut(s)	186, 806, 829
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	3 cut(s)	246, 428, 1007
RsaNI	GTAC	3 cut(s)	245, 427, 1006
RseI	CAYNNNNRTG	3 cut(s)	132, 222, 711
SalI	GTCGAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	870, 972
SatI	GCNGC	3 cut(s)	255, 415, 839
Sau3AI	GATC	5 cut(s)	84, 186, 490, 806, 829
Sau96I	GGNCC	3 cut(s)	252, 385, 899
SchI	GAGTC	5 cut(s)	108, 440, 591, 750, 1077
ScrFI	CCNGG	2 cut(s)	278, 1010
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	2 cut(s)	309, 703
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	385, 899
SmiMI	CAYNNNNRTG	3 cut(s)	132, 222, 711
SsiI	CCGC	2 cut(s)	250, 255
SspI	AATATT	2 cut(s)	748, 1085
SspMI	CTAG	4 cut(s)	18, 381, 617, 1079
StyD4I	CCNGG	2 cut(s)	276, 1008
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	4 cut(s)	458, 529, 895, 960
TaiI	ACGT	1 cut(s)	986
TaqI	TCGA	3 cut(s)	90, 116, 942
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	870, 972
Tru9I	TTAA	2 cut(s)	870, 972
TscAI	CASTG	3 cut(s)	217, 888, 1024
TseFI	GTSAC	5 cut(s)	100, 134, 467, 883, 936
TseI	GCWGC	2 cut(s)	414, 838
Tsp45I	GTSAC	5 cut(s)	100, 134, 467, 883, 936
TspDTI	ATGAA	3 cut(s)	377, 410, 786
TspGWI	ACGGA	2 cut(s)	255, 713
TspRI	CASTG	3 cut(s)	217, 888, 1024
VpaK11BI	GGWCC	2 cut(s)	385, 899
XapI	RAATTY	3 cut(s)	546, 762, 906
XceI	RCATGY	1 cut(s)	921
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XmiI	GTMKAC	2 cut(s)	90, 237
XspI	CTAG	4 cut(s)	18, 381, 617, 1079
ZraI	GACGTC	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.