Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006376.1

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Reverse (-)

16757 .. 21748

Gene Structure 4992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006376.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgttctcttccctttttgggaacaaggaggctcggatcctcgtcctcggattggacaatgctggcaaaaccactattctatatcggctacagatgggggaggttgtgtccacaattccaacgattggattcaatgttgagacagtgcagtacaacaacatcaaattccaagtatgggatctcggtggacagacaagtatcaggccatattggagatgctattttccaaatactcaagccataatctatgttgttgactctagcgacactgacaggctggtaatagctaaagaggagtttcatgctatcttggaggaggaagagttgaaaggtgcagttgtccttatttttgccaataagcaggatcttcctggtgcacttgatgatgctgcaataactgaggccttagagttgcacaagataaaaaaccgtcaatggtctatctttaaaacttctgccataaaaggcgaaggtctttttgagggcttagactggctgagtaacacactgaagtctggaggtggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

175

Amino Acids

19.55

Weight (kDa)

5.08

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AclWI	GGATC	4 cut(s)	31, 44, 186, 372
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	4 cut(s)	18, 52, 125, 175
AgsI	TTSAA	2 cut(s)	133, 328
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	4 cut(s)	31, 44, 186, 372
AoxI	GGCC	2 cut(s)	203, 402
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	206, 376
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 308, 338
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 52, 125, 175
Bse1I	ACTGG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	4 cut(s)	18, 52, 125, 175
BseMII	CTCAG	2 cut(s)	390, 488
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	308, 329
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	2 cut(s)	167, 354
BshFI	GGCC	2 cut(s)	205, 404
BsiHKAI	GWGCWC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	18, 52, 125, 175
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	205, 404
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	36, 178, 364
BspANI	GGCC	2 cut(s)	205, 404
BspCNI	CTCAG	2 cut(s)	391, 489
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	4 cut(s)	31, 44, 186, 372
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	36, 178, 364
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	145, 431
Bst6I	CTCTTC	2 cut(s)	13, 315
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	4 cut(s)	399, 406, 487, 497
BstKTI	GATC	3 cut(s)	39, 181, 367
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	36, 178, 364
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	3 cut(s)	36, 178, 364
BstYI	RGATCY	3 cut(s)	36, 178, 364
BsuRI	GGCC	2 cut(s)	205, 404
BtsIMutI	CAGTG	3 cut(s)	150, 267, 506
Cac8I	GCNNGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	302
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	4 cut(s)	399, 406, 487, 497
DpnI	GATC	3 cut(s)	38, 180, 366
DpnII	GATC	3 cut(s)	36, 178, 364
DraI	TTTAAA	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	13, 315
EarI	CTCTTC	2 cut(s)	13, 315
Eco147I	AGGCCT	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	305
FaiI	YATR	7 cut(s)	82, 175, 208, 242, 249, 303, 461
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	205, 404
Hin1II	CATG	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	129, 257
Hpy166II	GTNNAC	4 cut(s)	111, 188, 256, 377
Hpy188I	TCNGA	2 cut(s)	36, 50
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	4 cut(s)	111, 188, 256, 377
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	2 cut(s)	145, 431
HpyCH4V	TGCA	5 cut(s)	148, 335, 377, 392, 415
HpyF3I	CTNAG	4 cut(s)	399, 406, 487, 497
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	36, 178, 364
LpnPI	CCDG	9 cut(s)	48, 187, 259, 263, 347, 357, 384, 478, 501
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	206, 376
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	38, 180, 366
MboI	GATC	3 cut(s)	36, 178, 364
MboII	GAAGA	2 cut(s)	332, 359
MflI	RGATCY	3 cut(s)	36, 178, 364
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	2 cut(s)	114, 164
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	36, 178, 364
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	129
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	38
PsuI	RGATCY	3 cut(s)	36, 178, 364
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	3 cut(s)	36, 178, 364
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	5 cut(s)	105, 289, 334, 475, 523
SfaNI	GCATC	2 cut(s)	206, 376
SfcI	CTRYAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	2 cut(s)	114, 164
SseBI	AGGCCT	1 cut(s)	404
SspMI	CTAG	1 cut(s)	261
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	145, 431
TasI	AATT	2 cut(s)	114, 164
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	3 cut(s)	150, 274, 513
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	3 cut(s)	150, 274, 513
Van91I	CCANNNNNTGG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.