Rroxscaffold_5G00348260
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002882
Physical Location & Seq
Forward (+)
20307109 .. 20335520
28412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348260.1

Sequence Viewer

Length: 861 bp
ATGGGGGAGGTTGTCTCCACAATTCCAATTCTGATAGTTTTTGCACTGTTTGTTGCTACAGGTGGACAGACAAGTATCAGGCCATATTGGAGATGCTATTTTCCAAACACTCAAGCCATAATCTATGTTGTTGACTCTAGTGACACTGACAGGCTGGTAATAGCTAAAGAGGAGTTTCATGCTATCTTGGAGGATCTTCCTGGTGCACTTGATGATGCTGCAATAACTGAGGCCTTAGAGTTGCACAAGATAAAAAACCGTCAATGGTCTATCTTTAAAACTTCTGCCATAAAAGGCGAAGGACTTTTTGAGGGCTTAGACTGTTTTTGTGTTGTTGGTATTCTGCTGTGGGGTTATCTTCCTCCTCTAAGGCTGGACGTGGAAAGTGTCATGTTGCTCCTTTTAGTGCTTGGTACAAAAGACCTCAGCATTAAGAGGCACATAGGCCCCAGCAACAAGAGCCATATAGGCCCAGCAATAGAGGCACTTAGACCCAGCATAAACAAAATTCAACCCATAATGGGTGTGGCCAAATTACAAGTCAGAAGCCTAAAGAAGAAGTTCGGTTTCGCGAGTTATAATCTTCGAGGAATGGAAACCTCTGGATTTAGCTCGACAAGAATGGTTTGGTGGAAAGTGAGAGCTCGCCCAGTCATGGCAAAGCTCATGATGGCAGTAGCATGTGATGGGTGGATGGAGACCTTGAAGGAAATAGAGGGAAGAGAAAGAGAAGGAAACTCGAAGGAAAAGGGCAGATCTAGTCAAGAAAAAGACTGGGTGGATGGAGTGGAGATGGAGATAAAAGTAGTGGTGGTGGTGGTGGTGGTGGAAACGGAGGTGATACAGCGCTACACACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

286

Amino Acids

32.11

Weight (kDa)

8.57

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 20 - 108 1e-24 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AccII CGCG 1 cut(s) 572
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 1 cut(s) 415
AfeI AGCGCT 1 cut(s) 848
AfiI CCNNNNNNNGG 2 cut(s) 521, 655
AgsI TTSAA 2 cut(s) 512, 706
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 4 cut(s) 164, 612, 644, 664
AluI AGCT 4 cut(s) 164, 612, 644, 664
Alw21I GWGCWC 2 cut(s) 208, 646
Alw26I GTCTC 2 cut(s) 19, 692
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 1 cut(s) 201
Aor51HI AGCGCT 1 cut(s) 848
AoxI GGCC 5 cut(s) 80, 231, 445, 469, 528
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 507
ArsI GACNNNNNNTTYG 2 cut(s) 525, 557
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 1 cut(s) 849
AspS9I GGNCC 2 cut(s) 446, 470
AsuHPI GGTGA 1 cut(s) 850
BaeGI GKGCMC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 530
BanII GRGCYC 1 cut(s) 646
Bbv12I GWGCWC 2 cut(s) 208, 646
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 205
BccI CCATC 5 cut(s) 664, 680, 688, 776, 787
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 19, 692
BfaI CTAG 2 cut(s) 138, 759
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 468
BglII AGATCT 1 cut(s) 755
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 446, 470
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 201
BmrI ACTGGG 2 cut(s) 644, 784
BmsI GCATC 2 cut(s) 83, 205
BmuI ACTGGG 2 cut(s) 644, 784
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 692
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 655
Bse1I ACTGG 2 cut(s) 650, 779
BseBI CCWGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 699, 787
BseLI CCNNNNNNNGG 2 cut(s) 521, 655
BseMII CTCAG 2 cut(s) 219, 439
BseNI ACTGG 2 cut(s) 650, 779
BseRI GAGGAG 2 cut(s) 185, 354
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 3 cut(s) 449, 472, 494
Bsh1236I CGCG 1 cut(s) 572
BshFI GGCC 5 cut(s) 82, 233, 447, 471, 530
BsiHKAI GWGCWC 2 cut(s) 208, 646
BslI CCNNNNNNNGG 2 cut(s) 521, 655
BsmAI GTCTC 2 cut(s) 19, 692
BsnI GGCC 5 cut(s) 82, 233, 447, 471, 530
Bso31I GGTCTC 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 208, 646
Bsp143I GATC 2 cut(s) 193, 755
Bsp68I TCGCGA 1 cut(s) 572
BspANI GGCC 5 cut(s) 82, 233, 447, 471, 530
BspCNI CTCAG 2 cut(s) 220, 438
BspFNI CGCG 1 cut(s) 572
BspHI TCATGA 1 cut(s) 666
BspLI GGNNCC 1 cut(s) 448
BspPI GGATC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 692
BsrI ACTGG 2 cut(s) 650, 779
BssMI GATC 2 cut(s) 193, 755
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 48, 260, 323
Bst6I CTCTTC 1 cut(s) 715
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 6 cut(s) 228, 235, 316, 368, 425, 488
BstF5I GGATG 2 cut(s) 699, 787
BstFNI CGCG 1 cut(s) 572
BstH2I RGCGCY 1 cut(s) 850
BstHHI GCGC 1 cut(s) 849
BstKTI GATC 2 cut(s) 196, 758
BstMAI GTCTC 2 cut(s) 19, 692
BstMBI GATC 2 cut(s) 193, 755
BstMWI GCNNNNNNNGC 3 cut(s) 459, 468, 482
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 684
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 2 cut(s) 193, 755
BstYI RGATCY 2 cut(s) 193, 755
BsuRI GGCC 5 cut(s) 82, 233, 447, 471, 530
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 699, 787
BtsIMutI CAGTG 2 cut(s) 44, 144
BtuMI TCGCGA 1 cut(s) 572
Cac8I GCNNGC 1 cut(s) 646
CciI TCATGA 1 cut(s) 666
CfoI GCGC 1 cut(s) 849
Cfr13I GGNCC 2 cut(s) 446, 470
Csp6I GTAC 1 cut(s) 414
CviAII CATG 5 cut(s) 179, 391, 655, 667, 681
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 6 cut(s) 228, 235, 316, 368, 425, 488
DpnI GATC 2 cut(s) 195, 757
DpnII GATC 2 cut(s) 193, 755
DraI TTTAAA 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 715
EarI CTCTTC 1 cut(s) 715
Ecl136II GAGCTC 1 cut(s) 644
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 692
Eco47III AGCGCT 1 cut(s) 848
Eco53kI GAGCTC 1 cut(s) 644
EcoICRI GAGCTC 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 646
FaeI CATG 5 cut(s) 182, 394, 658, 670, 684
FatI CATG 5 cut(s) 178, 390, 654, 666, 680
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 706, 794
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 138, 759
GlaI GCGC 1 cut(s) 848
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 3 cut(s) 453, 476, 498
HaeII RGCGCY 1 cut(s) 850
HaeIII GGCC 5 cut(s) 82, 233, 447, 471, 530
HhaI GCGC 1 cut(s) 849
Hin1II CATG 5 cut(s) 182, 394, 658, 670, 684
Hin6I GCGC 1 cut(s) 847
HinP1I GCGC 1 cut(s) 847
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 850
Hpy166II GTNNAC 3 cut(s) 65, 133, 206
Hpy188I TCNGA 2 cut(s) 33, 545
Hpy188III TCNNGA 4 cut(s) 571, 603, 667, 764
Hpy8I GTNNAC 3 cut(s) 65, 133, 206
HpyAV CCTTC 4 cut(s) 293, 700, 725, 736
HpyCH4III ACNGT 3 cut(s) 48, 260, 323
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 44, 206, 221, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 459, 468, 482
HpyF3I CTNAG 6 cut(s) 228, 235, 316, 368, 425, 488
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 5 cut(s) 182, 394, 658, 670, 684
HspAI GCGC 1 cut(s) 847
Kzo9I GATC 2 cut(s) 193, 755
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 2 cut(s) 83, 205
MaeI CTAG 2 cut(s) 138, 759
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 195, 757
MboI GATC 2 cut(s) 193, 755
MboII GAAGA 5 cut(s) 188, 350, 568, 575, 732
MflI RGATCY 2 cut(s) 193, 755
MhlI GDGCHC 2 cut(s) 208, 646
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 4 cut(s) 21, 27, 507, 533
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 560
MscI TGGCCA 1 cut(s) 530
MseI TTAA 2 cut(s) 276, 432
Msp20I TGGCCA 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 3 cut(s) 459, 468, 482
NdeII GATC 2 cut(s) 193, 755
NlaIII CATG 5 cut(s) 182, 394, 658, 670, 684
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 140
NruI TCGCGA 1 cut(s) 572
NspI RCATGY 1 cut(s) 684
PagI TCATGA 1 cut(s) 666
PceI AGGCCT 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 560
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PsiI TTATAA 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 3 cut(s) 449, 472, 494
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 2 cut(s) 446, 470
PsuI RGATCY 2 cut(s) 193, 755
RruI TCGCGA 1 cut(s) 572
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 2 cut(s) 276, 432
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 193, 755
Sau96I GGNCC 2 cut(s) 446, 470
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 2 cut(s) 208, 646
SfaNI GCATC 2 cut(s) 83, 205
SfcI CTRYAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 4 cut(s) 21, 27, 507, 533
SseBI AGGCCT 1 cut(s) 233
SspMI CTAG 2 cut(s) 138, 759
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 3 cut(s) 48, 260, 323
TaiI ACGT 1 cut(s) 381
TaqI TCGA 3 cut(s) 586, 614, 740
TasI AATT 4 cut(s) 21, 27, 507, 533
Tru1I TTAA 2 cut(s) 276, 432
Tru9I TTAA 2 cut(s) 276, 432
TscAI CASTG 2 cut(s) 51, 151
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 848
TspRI CASTG 2 cut(s) 51, 151
VneI GTGCAC 1 cut(s) 204
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 684
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 2 cut(s) 138, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.