Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Forward (+)

24201007 .. 24204492

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21050.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCGGTGGAAGCAAAGGTTGAGACTGCGGCGGAGTTGGCTCTTGCTGATACTGATGTGAACTGGGACAGGTTGGACAAGGCGAGGTTCCATATAATTGGGGCCATTCTCTTCACCGCACAATCAGCCTTACTACACCCAACATTAGTTGTGAAAACCAGAATGCAAGTAGACACTAGACTCTCTCACATGAGTGCAACATCGGTATTTAAACAGATATTAAAGATGGATGGAATACCTGGAGTCTACAGGGGTTTTGGCACTTCTGCAATTGGATCATTGCCAGGTAGGGTCTTGGCTTTGACATCACTTGAAGTTTCAAAGGATATGATGTTCAAGTACACTGAAGGTTCAAAGATGCCTGACGCTACACGTATTGGTATTGCAAATGGAGTGGCGGGCATGTTCTCAAATCTCATTTCTTGTGCATACTATGTACCCTTGGATGTGACTTGCCAGAGACTAATGGTTCAAGGACTTTCTGGGACTACATCCTGCAACCGACCATTTGAGGTCATACGTAAAGTTATACAGGCTGAAGGTTTTCGTGGTCTGTACAGGGGCTTCGGGCTGACAGCACTGAGCCAGTCGCCAGCATCTGCGCTTTGGTGGGGAGCCTATGGTTCTGTCCAACACATGATCTGGAGGAGTTTGGGCTATAGCGATAAAGACCAACAAAAGCCATCTCATACGGAGATGGCGACAGTTCAGGCAACGGCGGGTATGATGGCTGGTGCTTTGTCCTCTGTCATCACTACTCCTATTGACACAATCAAGACACGACTTCAGGTCATGGATAACTATGGTGCTGGAAGACCAACGGTATTGAAGACAGCAAAGACACTATTTGAAGAAGATGGATGGTGGGGCTTTTACAGAGGATTTGGTCCGCGGTTCTTAAACATGTCACTCTACGGAACTACAATGATAGTCACTTATGAACTAATAAAAAGATTATCTATAAGACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

325

Amino Acids

35.67

Weight (kDa)

9.36

Isoelectric Point (pI)

26.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 114	9.4e-14	Mitochondrial carrier protein
Mito_carr	PF00153	129 - 216	2.6e-17	Mitochondrial carrier protein
Mito_carr	PF00153	236 - 319	8.5e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	171, 246
AccII	CGCG	1 cut(s)	892
AciI	CCGC	7 cut(s)	29, 32, 117, 398, 719, 890, 892
AclWI	GGATC	1 cut(s)	283
AcuI	CTGAAG	3 cut(s)	366, 558, 770
AfaI	GTAC	3 cut(s)	341, 438, 557
AflIII	ACRYGT	2 cut(s)	371, 903
AgsI	TTSAA	7 cut(s)	314, 321, 337, 354, 473, 829, 851
AhdI	GACNNNNNGTC	1 cut(s)	788
AjnI	CCWGG	2 cut(s)	238, 283
AleI	CACNNNNGTG	1 cut(s)	192
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
Alw26I	GTCTC	2 cut(s)	17, 454
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	102, 887
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	887
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
BbsI	GAAGAC	2 cut(s)	820, 836
BccI	CCATC	7 cut(s)	220, 224, 691, 691, 721, 851, 855
BceAI	ACGGC	1 cut(s)	732
BciT130I	CCWGG	2 cut(s)	240, 285
BcoDI	GTCTC	2 cut(s)	17, 454
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	2 cut(s)	247, 658
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	240, 285
Bme18I	GGWCC	1 cut(s)	887
BmeRI	GACNNNNNGTC	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	102, 887
BmiI	GGNNCC	3 cut(s)	89, 103, 616
BmrFI	CCNGG	2 cut(s)	240, 285
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	348, 605
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	2 cut(s)	820, 836
BpmI	CTGGAG	2 cut(s)	261, 664
BsaAI	YACGTR	2 cut(s)	374, 521
BsaJI	CCNNGG	2 cut(s)	441, 890
Bse1I	ACTGG	2 cut(s)	68, 586
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	240, 285
BseDI	CCNNGG	2 cut(s)	441, 890
BseGI	GGATG	4 cut(s)	235, 451, 491, 866
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	2 cut(s)	68, 586
BseRI	GAGGAG	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	892
BshFI	GGCC	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	80, 499
BsmAI	GTCTC	2 cut(s)	17, 454
BsmFI	GGGAC	2 cut(s)	80, 499
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	275, 639
BspACI	CCGC	7 cut(s)	29, 32, 117, 398, 719, 890, 892
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	892
BspLI	GGNNCC	3 cut(s)	89, 103, 616
BspPI	GGATC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	68, 586
BssECI	CCNNGG	2 cut(s)	441, 890
BssMI	GATC	2 cut(s)	275, 639
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	240, 285
Bst4CI	ACNGT	2 cut(s)	706, 823
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	555
BstBAI	YACGTR	2 cut(s)	374, 521
BstC8I	GCNNGC	2 cut(s)	400, 594
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	890
BstF5I	GGATG	4 cut(s)	235, 451, 491, 866
BstFNI	CGCG	1 cut(s)	892
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	2 cut(s)	278, 642
BstMAI	GTCTC	2 cut(s)	17, 454
BstMBI	GATC	2 cut(s)	275, 639
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 125
BstNI	CCWGG	2 cut(s)	240, 285
BstNSI	RCATGY	2 cut(s)	406, 907
BstSCI	CCNGG	2 cut(s)	238, 283
BstSFI	CTRYAG	2 cut(s)	247, 658
BstSNI	TACGTA	1 cut(s)	521
BstUI	CGCG	1 cut(s)	892
BstV2I	GAAGAC	2 cut(s)	820, 836
BstXI	CCANNNNNNTGG	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	890
BtsCI	GGATG	4 cut(s)	235, 451, 491, 866
BtsIMutI	CAGTG	2 cut(s)	342, 578
Cac8I	GCNNGC	2 cut(s)	400, 594
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	102, 887
Cfr42I	CCGCGG	1 cut(s)	893
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	340, 437, 556
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	5 cut(s)	190, 403, 637, 793, 904
CviQI	GTAC	3 cut(s)	340, 437, 556
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	2 cut(s)	277, 641
DpnII	GATC	2 cut(s)	275, 639
DraI	TTTAAA	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	788
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	47
Eco105I	TACGTA	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	887
Eco57I	CTGAAG	3 cut(s)	366, 558, 770
EcoRII	CCWGG	2 cut(s)	238, 283
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	5 cut(s)	193, 406, 640, 796, 907
FaqI	GGGAC	2 cut(s)	80, 499
FatI	CATG	5 cut(s)	189, 402, 636, 792, 903
FauI	CCCGC	2 cut(s)	391, 712
FblI	GTMKAC	2 cut(s)	171, 246
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	4 cut(s)	242, 458, 478, 873
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	2 cut(s)	261, 664
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	5 cut(s)	193, 406, 640, 796, 907
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	2 cut(s)	180, 243
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	4 cut(s)	61, 172, 247, 342
Hpy188III	TCNNGA	2 cut(s)	643, 775
Hpy8I	GTNNAC	4 cut(s)	61, 172, 247, 342
HpyAV	CCTTC	2 cut(s)	341, 533
HpyCH4III	ACNGT	2 cut(s)	706, 823
HpyCH4IV	ACGT	2 cut(s)	373, 520
HpyCH4V	TGCA	6 cut(s)	166, 197, 269, 386, 428, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 125
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	2 cut(s)	373, 520
Hsp92II	CATG	5 cut(s)	193, 406, 640, 796, 907
HspAI	GCGC	1 cut(s)	602
KspI	CCGCGG	1 cut(s)	893
Kzo9I	GATC	2 cut(s)	275, 639
LmnI	GCTCC	1 cut(s)	614
LweI	GCATC	2 cut(s)	348, 605
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	373, 520
MaeIII	GTNAC	3 cut(s)	448, 906, 931
MalI	GATC	2 cut(s)	277, 641
MboI	GATC	2 cut(s)	275, 639
MboII	GAAGA	5 cut(s)	103, 825, 841, 863, 866
MfeI	CAATTG	1 cut(s)	270
MluCI	AATT	2 cut(s)	96, 270
MlyI	GAGTC	2 cut(s)	174, 252
MmeI	TCCRAC	2 cut(s)	54, 655
MnlI	CCTC	5 cut(s)	78, 505, 639, 754, 872
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	3 cut(s)	210, 221, 899
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	892
MspR9I	CCNGG	2 cut(s)	240, 285
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	2 cut(s)	240, 285
MvnI	CGCG	1 cut(s)	892
MwoI	GCNNNNNNNGC	2 cut(s)	38, 125
NdeII	GATC	2 cut(s)	275, 639
NlaIII	CATG	5 cut(s)	193, 406, 640, 796, 907
NlaIV	GGNNCC	3 cut(s)	89, 103, 616
NmuCI	GTSAC	3 cut(s)	448, 906, 931
NspI	RCATGY	2 cut(s)	406, 907
OliI	CACNNNNGTG	1 cut(s)	192
PciI	ACATGT	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	1 cut(s)	698
PctI	GAATGC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	543
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	2 cut(s)	174, 251
PpsI	GAGTC	2 cut(s)	174, 251
Ppu21I	YACGTR	2 cut(s)	374, 521
PscI	ACATGT	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	238, 283
PspGI	CCWGG	2 cut(s)	238, 283
PspN4I	GGNNCC	3 cut(s)	89, 103, 616
PspPI	GGNCC	2 cut(s)	102, 887
PstNI	CAGNNNCTG	1 cut(s)	599
RsaI	GTAC	3 cut(s)	341, 438, 557
RsaNI	GTAC	3 cut(s)	340, 437, 556
RseI	CAYNNNNRTG	1 cut(s)	192
SacII	CCGCGG	1 cut(s)	893
SaqAI	TTAA	3 cut(s)	210, 221, 899
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	275, 639
Sau96I	GGNCC	2 cut(s)	102, 887
SchI	GAGTC	2 cut(s)	174, 252
ScrFI	CCNGG	2 cut(s)	240, 285
SfaNI	GCATC	2 cut(s)	348, 605
SfcI	CTRYAG	2 cut(s)	247, 658
Sfr303I	CCGCGG	1 cut(s)	893
SgrBI	CCGCGG	1 cut(s)	893
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	1 cut(s)	192
SnaBI	TACGTA	1 cut(s)	521
Sse9I	AATT	2 cut(s)	96, 270
SsiI	CCGC	7 cut(s)	29, 32, 117, 398, 719, 890, 892
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	238, 283
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	706, 823
TaiI	ACGT	2 cut(s)	376, 523
TasI	AATT	2 cut(s)	96, 270
TatI	WGTACW	2 cut(s)	339, 555
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	210, 221, 899
Tru9I	TTAA	3 cut(s)	210, 221, 899
TscAI	CASTG	2 cut(s)	349, 585
TseFI	GTSAC	3 cut(s)	448, 906, 931
Tsp45I	GTSAC	3 cut(s)	448, 906, 931
TspDTI	ATGAA	1 cut(s)	954
TspGWI	ACGGA	2 cut(s)	707, 930
TspRI	CASTG	2 cut(s)	349, 585
VpaK11BI	GGWCC	1 cut(s)	887
XceI	RCATGY	2 cut(s)	406, 907
XmiI	GTMKAC	2 cut(s)	171, 246
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.