Rh4CG128100
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002882
Physical Location & Seq
Forward (+)
25131985 .. 25135022
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG128100.1

Sequence Viewer

Length: 336 bp
ATGGGCATTTTGTTCACGAAAATGTTCTCTTCCCTTTTTGGGAACAAGGAGGCTCGGATCCTCGTCCTTGGATTGGACAATGCTGGCAAAACCACTATTCTATATCGGCTGCAGATGGGGGAGGTTGTGTCCACAATTCCAACGATTGGATTCAATGTTGAGACAGTGCAGTACAACAACATCAAATTCCAAGTATGGGATCTCGGTGGACAGACAAGTATCAGGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATCTATGTTGTTGACTCTAGCGACACTGACAGGCTGGTAATAGCTAAAGAGGAGTTTCATGCTATCTTGGAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

112

Amino Acids

12.77

Weight (kDa)

5.78

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 5 - 112 9.6e-52 ADP-ribosylation factor family
SRPRB PF09439 16 - 106 1.6e-08 Signal recognition particle receptor beta subunit
Roc PF08477 19 - 99 1.5e-12 Ras of Complex, Roc, domain of DAPkinase
Gtr1_RagA PF04670 19 - 109 4.2e-08 Gtr1/RagA G protein conserved region
Ras PF00071 19 - 96 1.9e-07 Ras family
G-alpha PF00503 44 - 104 2.8e-09 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AclWI GGATC 3 cut(s) 52, 65, 207
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 39, 73, 146, 196
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 52, 65, 207
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 23
BamHI GGATCC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 59
BmsI GCATC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 73, 146, 196
BseDI CCNNGG 1 cut(s) 67
BseLI CCNNNNNNNGG 4 cut(s) 39, 73, 146, 196
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 188
BshFI GGCC 1 cut(s) 226
BslI CCNNNNNNNGG 4 cut(s) 39, 73, 146, 196
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 57, 199
BspANI GGCC 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 114
BspPI GGATC 3 cut(s) 52, 65, 207
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 57, 199
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 60, 202
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 57, 199
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 57, 199
BstYI RGATCY 2 cut(s) 57, 199
BsuRI GGCC 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 171, 288
Cac8I GCNNGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 323
CviJI RGCY 6 cut(s) 53, 109, 226, 260, 298, 308
CviKI_1 RGCY 6 cut(s) 53, 109, 226, 260, 298, 308
CviQI GTAC 1 cut(s) 172
DpnI GATC 2 cut(s) 59, 201
DpnII GATC 2 cut(s) 57, 199
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 326
FaiI YATR 6 cut(s) 103, 196, 229, 263, 270, 324
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 1 cut(s) 326
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 2 cut(s) 150, 278
Hpy166II GTNNAC 4 cut(s) 15, 132, 209, 277
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 4 cut(s) 15, 132, 209, 277
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 112, 169
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 2 cut(s) 57, 199
LpnPI CCDG 4 cut(s) 69, 208, 280, 284
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 227
MaeI CTAG 1 cut(s) 282
MalI GATC 2 cut(s) 59, 201
MboI GATC 2 cut(s) 57, 199
MboII GAAGA 1 cut(s) 21
MflI RGATCY 2 cut(s) 57, 199
MluCI AATT 2 cut(s) 135, 185
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 4 cut(s) 43, 71, 115, 307
MroXI GAANNNNTTC 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 20
NdeII GATC 2 cut(s) 57, 199
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 146
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 114
PsuI RGATCY 2 cut(s) 57, 199
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 57, 199
SchI GAGTC 1 cut(s) 272
SetI ASST 2 cut(s) 126, 310
SfaNI GCATC 1 cut(s) 227
SfcI CTRYAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 2 cut(s) 135, 185
SspMI CTAG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 166
TasI AATT 2 cut(s) 135, 185
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 2 cut(s) 171, 295
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 2 cut(s) 171, 295
Van91I CCANNNNNTGG 1 cut(s) 146
XapI RAATTY 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.