Rmu_sc0026566.1_g000001
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026566.1
OG0002882
Physical Location & Seq
Reverse (-)
1 .. 1962
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026566.1_g000001.1.cds

Sequence Viewer

Length: 311 bp
atgttggctttgtgccacaggccatattggagatgctattttccaaatactcaagccataatctatgttgttgactctagcgacactgacaggctggtaatagctaaagaggagtttcatgctatcttggaggaggaagagctgaaaggtgcagttgtccttatttttgccaataagcaggatcttcctggtgcacttgatgatgctgcaataactgaggccttagagttgcacaagataaaaaaccgtcaatggtctatctttaaaacttctgccataaaaggcgaaggtctttttgagggcttagactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

103

Amino Acids

11.69

Weight (kDa)

4.98

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 104, 142
AluI AGCT 2 cut(s) 104, 142
Alw21I GWGCWC 1 cut(s) 196
Alw44I GTGCAC 1 cut(s) 192
AlwI GGATC 1 cut(s) 189
AoxI GGCC 2 cut(s) 20, 219
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 78
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 23, 193
BpuEI CTTGAG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 125, 146
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 2 cut(s) 22, 221
BsiHKAI GWGCWC 1 cut(s) 196
BsnI GGCC 2 cut(s) 22, 221
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 2 cut(s) 22, 221
BspCNI CTCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 132
BssMI GATC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 216, 223, 304
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 2 cut(s) 22, 221
BtsIMutI CAGTG 1 cut(s) 84
CviAII CATG 1 cut(s) 119
CviJI RGCY 8 cut(s) 8, 22, 56, 94, 104, 142, 221, 303
CviKI_1 RGCY 8 cut(s) 8, 22, 56, 94, 104, 142, 221, 303
DdeI CTNAG 3 cut(s) 216, 223, 304
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraI TTTAAA 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 25, 59, 66, 120, 278
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 2 cut(s) 22, 221
Hin1II CATG 1 cut(s) 122
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 73, 194
Hpy8I GTNNAC 2 cut(s) 73, 194
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 152, 194, 209, 232
HpyF3I CTNAG 3 cut(s) 216, 223, 304
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 4, 76, 80, 164, 174, 201
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 23, 193
MaeI CTAG 1 cut(s) 78
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 149, 176
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 196
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 103, 124, 127, 211, 292
MseI TTAA 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 122
PceI AGGCCT 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 181
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 196
SetI ASST 4 cut(s) 106, 144, 151, 292
SfaNI GCATC 2 cut(s) 23, 193
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
SseBI AGGCCT 1 cut(s) 221
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 248
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 192
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.