Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Forward (+)

37096754 .. 37097907

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0213700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGACATCACTCAAAGCTTTGTTCATTTTCTCTCTTTTCCTTGCCTCCATCTCTTTCTCTCTTAGCTATCAGGATGACCCTCAGCAGCAACAGCAGCAGTGCCATCAAGAATGCCTAGTCCTAGAGCAGATGGAGGAGCAGCAGCAGAAAGGCATCGGCGGAGAAGGACATGGAGGTGAACCACAGATTAGGGAGTGCCAGCGGAGCTGCGACAAACAGCATACCTGGCGCCCAGATATATCCTACGAGGAAGGGAGTAAAAAACACGGACAATGTCGTGCACAATGCGGGCAGCAGTGCCTGCGGAGGTGCGACGAACAGCAACACCTCGAACATGAGATTCAGGACCTACACTGTCGTCAACAATGCGGGCGGTACTTAACACATAATGAGCGTGGACAAATATGCCAGCAGCGTTGTCAGAGTCAACAAAGTGGCGATCGGCAACAGCAACGACAGTGCCAATCAAGTTGCCTGCAGCAATTGCAGGATCCTGAAACGAAATTTGGGGAATGCCAGGATAGATGTATATTGTCTGGGCAACGCCAACAACAATGTTTTCACCAGTGCAAAGAGCAATTGAGCGAACAGGAACGTCGGCAGATCTGCCTGCGGCTTTGTCTTAGGAATTTACAGTGTAGTGAACGGCAGGCAGTGCGACAATATTGCCAGAGAATGTGCTGCTGCGAGAACCAACTACAACCTGGAGAACAAGACTTCAATCGGCAATCAAGAGATCCCGAGCAGAAATTTGAGCTATGCAAGCAAAGGTGCCAATCCAGGCAACATGGACCACAAGGTCAACAACAACAGCAGCAGTGCGGTCAACAATGCGGACAACAATTGAGCCAATATGAGCGTCAACAGGTGTGCCAACAACGTTGCCAGAGGCGACAAGGTGGGGATTTGAAACAACAACAACATTGCCAAAGAAGGTGCGAGCAACAACTTGAACAAGGAAAACAAGATGAGGGTCAATTTGACATGCAACAATTTGAGCAAGAACAGGGTCAACAGGGTCAGAGCCTACTCATATCTTCAAGTTTGGGCTTCGCAGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

355

Amino Acids

41.74

Weight (kDa)

6.8

Isoelectric Point (pI)

80.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	801
AccB1I	GGYRCC	2 cut(s)	231, 774
AciI	CCGC	9 cut(s)	162, 205, 291, 307, 372, 376, 616, 825, 837
AclI	AACGTT	1 cut(s)	883
AclWI	GGATC	3 cut(s)	488, 501, 734
AcsI	RAATTY	3 cut(s)	506, 631, 752
AcyI	GRCGYC	1 cut(s)	232
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	4 cut(s)	724, 913, 956, 1044
AjnI	CCWGG	4 cut(s)	227, 519, 706, 782
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	4 cut(s)	20, 69, 210, 760
AluI	AGCT	4 cut(s)	20, 69, 210, 760
Alw21I	GWGCWC	1 cut(s)	286
Alw44I	GTGCAC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	488, 501, 734
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	743
ApaLI	GTGCAC	1 cut(s)	282
ApoI	RAATTY	3 cut(s)	506, 631, 752
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	349, 794
AsuHPI	GGTGA	2 cut(s)	191, 557
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	2 cut(s)	349, 794
BaeGI	GKGCMC	1 cut(s)	286
BamHI	GGATCC	1 cut(s)	493
BanI	GGYRCC	2 cut(s)	231, 774
Bbv12I	GWGCWC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	84
BccI	CCATC	3 cut(s)	59, 114, 127
BceAI	ACGGC	1 cut(s)	665
BcgI	CGANNNNNNTGC	2 cut(s)	651, 685
BciT130I	CCWGG	4 cut(s)	229, 521, 708, 784
BfaI	CTAG	2 cut(s)	119, 125
BfmI	CTRYAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	235
BglII	AGATCT	1 cut(s)	606
Bme1390I	CCNGG	4 cut(s)	229, 521, 708, 784
Bme18I	GGWCC	2 cut(s)	349, 794
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	349, 794
BmiI	GGNNCC	3 cut(s)	233, 495, 776
BmrFI	CCNGG	4 cut(s)	229, 521, 708, 784
BmsI	GCATC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	729
Bpu10I	CCTNAGC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	925
BseBI	CCWGG	4 cut(s)	229, 521, 708, 784
BseGI	GGATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	925
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	445
BshNI	GGYRCC	2 cut(s)	231, 774
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	743
BsmI	GAATGC	2 cut(s)	119, 521
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	442, 493, 606, 739
BspACI	CCGC	9 cut(s)	162, 205, 291, 307, 372, 376, 616, 825, 837
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	233, 495, 776
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	3 cut(s)	488, 501, 734
BspT107I	GGYRCC	2 cut(s)	231, 774
BsrDI	GCAATG	1 cut(s)	925
BsrI	ACTGG	1 cut(s)	568
BssMI	GATC	4 cut(s)	442, 493, 606, 739
BssNI	GRCGYC	1 cut(s)	232
Bst2UI	CCWGG	4 cut(s)	229, 521, 708, 784
Bst4CI	ACNGT	3 cut(s)	359, 462, 639
BstACI	GRCGYC	1 cut(s)	232
BstAPI	GCANNNNNTGC	3 cut(s)	304, 487, 658
BstDEI	CTNAG	3 cut(s)	65, 84, 626
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	4 cut(s)	445, 496, 609, 742
BstMBI	GATC	4 cut(s)	442, 493, 606, 739
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	9 cut(s)	94, 97, 207, 229, 304, 487, 658, 766, 1059
BstNI	CCWGG	4 cut(s)	229, 521, 708, 784
BstNSI	RCATGY	1 cut(s)	991
BstSCI	CCNGG	4 cut(s)	227, 519, 706, 782
BstSFI	CTRYAG	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	286
BstX2I	RGATCY	3 cut(s)	493, 606, 739
BstYI	RGATCY	3 cut(s)	493, 606, 739
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	4 cut(s)	107, 305, 663, 827
BtsIMutI	CAGTG	8 cut(s)	107, 305, 355, 467, 575, 644, 663, 827
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	349, 794
CseI	GACGC	1 cut(s)	851
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	4 cut(s)	173, 338, 791, 988
CviJI	RGCY	9 cut(s)	20, 69, 210, 619, 760, 852, 1029, 1053, 1062
CviKI_1	RGCY	9 cut(s)	20, 69, 210, 619, 760, 852, 1029, 1053, 1062
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	65, 84, 626
DinI	GGCGCC	1 cut(s)	233
DpnI	GATC	4 cut(s)	444, 495, 608, 741
DpnII	GATC	4 cut(s)	442, 493, 606, 739
DrdI	GACNNNNNNGTC	1 cut(s)	801
DseDI	GACNNNNNNGTC	1 cut(s)	801
EciI	GGCGGA	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	349, 794
Eco88I	CYCGRG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	4 cut(s)	227, 519, 706, 782
EgeI	GGCGCC	1 cut(s)	233
EheI	GGCGCC	1 cut(s)	233
FaeI	CATG	4 cut(s)	176, 341, 794, 991
FatI	CATG	4 cut(s)	172, 337, 790, 987
FauI	CCCGC	2 cut(s)	284, 365
FokI	GGATG	1 cut(s)	89
FspBI	CTAG	2 cut(s)	119, 125
GlaI	GCGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	729
HaeII	RGCGCY	1 cut(s)	235
HgaI	GACGC	1 cut(s)	851
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	4 cut(s)	176, 341, 794, 991
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	6 cut(s)	365, 431, 806, 830, 866, 1016
HindII	GTYRAC	6 cut(s)	365, 431, 806, 830, 866, 1016
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	343, 427
HphI	GGTGA	2 cut(s)	191, 557
Hpy188I	TCNGA	2 cut(s)	426, 1026
Hpy188III	TCNNGA	6 cut(s)	74, 110, 347, 497, 735, 743
Hpy99I	CGWCG	2 cut(s)	320, 603
HpyAV	CCTTC	3 cut(s)	161, 248, 930
HpyCH4III	ACNGT	3 cut(s)	359, 462, 639
HpyCH4IV	ACGT	2 cut(s)	598, 883
HpyCH4V	TGCA	6 cut(s)	284, 481, 490, 573, 765, 991
HpyF10VI	GCNNNNNNNGC	9 cut(s)	94, 97, 207, 229, 304, 487, 658, 766, 1059
HpyF3I	CTNAG	3 cut(s)	65, 84, 626
HpySE526I	ACGT	2 cut(s)	598, 883
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	176, 341, 794, 991
HspAI	GCGC	1 cut(s)	232
KasI	GGCGCC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	442, 493, 606, 739
LmnI	GCTCC	2 cut(s)	139, 207
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	119, 125
MaeII	ACGT	2 cut(s)	598, 883
MalI	GATC	4 cut(s)	444, 495, 608, 741
MboI	GATC	4 cut(s)	442, 493, 606, 739
MboII	GAAGA	1 cut(s)	1032
MfeI	CAATTG	3 cut(s)	485, 581, 845
MflI	RGATCY	3 cut(s)	493, 606, 739
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	8 cut(s)	485, 506, 581, 631, 752, 845, 980, 995
Mly113I	GGCGCC	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	9 cut(s)	58, 93, 130, 170, 244, 303, 341, 885, 967
MseI	TTAA	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	205
MspR9I	CCNGG	4 cut(s)	229, 521, 708, 784
MunI	CAATTG	3 cut(s)	485, 581, 845
Mva1269I	GAATGC	2 cut(s)	119, 521
MvaI	CCWGG	4 cut(s)	229, 521, 708, 784
MwoI	GCNNNNNNNGC	9 cut(s)	94, 97, 207, 229, 304, 487, 658, 766, 1059
NarI	GGCGCC	1 cut(s)	232
NdeII	GATC	4 cut(s)	442, 493, 606, 739
NlaIII	CATG	4 cut(s)	176, 341, 794, 991
NlaIV	GGNNCC	3 cut(s)	233, 495, 776
NspI	RCATGY	1 cut(s)	991
PctI	GAATGC	2 cut(s)	119, 521
PfeI	GAWTC	1 cut(s)	343
PflFI	GACNNNGTC	1 cut(s)	276
Ple19I	CGATCG	1 cut(s)	445
PleI	GAGTC	1 cut(s)	435
PluTI	GGCGCC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	349
Psp1406I	AACGTT	1 cut(s)	883
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	4 cut(s)	227, 519, 706, 782
PspGI	CCWGG	4 cut(s)	227, 519, 706, 782
PspN4I	GGNNCC	3 cut(s)	233, 495, 776
PspPI	GGNCC	2 cut(s)	349, 794
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	3 cut(s)	493, 606, 739
PsyI	GACNNNGTC	1 cut(s)	276
PvuI	CGATCG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	383
Sau3AI	GATC	4 cut(s)	442, 493, 606, 739
Sau96I	GGNCC	2 cut(s)	349, 794
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	4 cut(s)	229, 521, 708, 784
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	479
SfoI	GGCGCC	1 cut(s)	233
SinI	GGWCC	2 cut(s)	349, 794
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	8 cut(s)	485, 506, 581, 631, 752, 845, 980, 995
SsiI	CCGC	9 cut(s)	162, 205, 291, 307, 372, 376, 616, 825, 837
SspDI	GGCGCC	1 cut(s)	231
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	2 cut(s)	119, 125
StyD4I	CCNGG	4 cut(s)	227, 519, 706, 782
TaaI	ACNGT	3 cut(s)	359, 462, 639
TaiI	ACGT	2 cut(s)	601, 886
TaqI	TCGA	1 cut(s)	333
TasI	AATT	8 cut(s)	485, 506, 581, 631, 752, 845, 980, 995
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	8 cut(s)	107, 305, 362, 467, 575, 644, 663, 827
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	8 cut(s)	107, 305, 362, 467, 575, 644, 663, 827
Tth111I	GACNNNGTC	1 cut(s)	276
VneI	GTGCAC	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	349, 794
XapI	RAATTY	3 cut(s)	506, 631, 752
XceI	RCATGY	1 cut(s)	991
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XspI	CTAG	2 cut(s)	119, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.