Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Reverse (-)

8738878 .. 8742946

Gene Structure 4069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G109500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAATTGTTTGTTGGGAAGAAGCGTAATTACACAGTTGCAGGAGAACCCAAAGGAGAGCAGCAGTGTGTGGAAAAGAAAAGAAGAAACTAGGAAAGATTGGAGAAAAGAAGAAAACATGGCGGTGGAAACTGAGGCTGTGACCGTGCCAGAGTTGGCTCTTGCTGACACTGACATCAACTGGGACAGGTTGGACAAGACAAGGTTTCATATTATTGGGGCTATTCTCTTCACAGCGCAGTCAGCCTTACTACATCCAACATCAGTTGTAAAGACTAGAATGCAGGTAGCTGGTTCTGGATTCTCTCACATGGGTGGAATATCAGTATTTAGACATATATTAAAGAGTGATGGCATCCCTGGCATATTCAGAGGTTTTGGCACTTCTGCCATTGGATCGTTGCCTGGTAGGGTCTTGGCTTTGACATCACTTGAAGTATCAAAAGATATGATGTTGAAATACATTGAAGATCTAGACATGCCTGAGGCTACGCGTATTGGAATTGCAAATGCAGTGGCGGGCATGTTCTCAAATTTAGTTTCTTGTGTATACTATGTGCCCTTGGATGTGATTTGCCAGAGACTAATGGTTCAAGGACTTCCTGGGACTACATCCTGCAACAGACCATTTGATGTCATACATAAAGTGATAAAGGCTGAAGGTCTTCGTGGTTTATATAGAGGCTTTGGATTGACAGCTGTGACCCAGTCGCCAGCATCTGCACTTTGGTGGGGTGCCTATGGTTCTGCCCAGCACATCATCTGGAGGAGCTTGGGCTATACCGATGATGCAGAGAAGAAACCATCTCATATGGAGATGGTGACAGTTCAGGCTGCAGCAGGCATGATGGCGGGTGCTTGTTCCTCCATTATAACTACTCCCATTGACACAGTCAAGACACGACTTCAGGTCATGGATAATTATGGTGTTGGACGACCATCAGTATTGAAGACGGCAAAAGCACTCCTTAAAGAGGATGGATGGCGGGGCTTTTATAGAGGATTTGGTCCACGGTTCTTAAATATGTCACTCTATGGAACTACAATGATCGTTACTTATGAATTAATAAAGAGATTATCTGTAAGGCGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

365

Amino Acids

40.22

Weight (kDa)

9.28

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	872
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	1 cut(s)	493
AciI	CCGC	4 cut(s)	122, 518, 851, 985
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	2 cut(s)	678, 890
AfiI	CCNNNNNNNGG	1 cut(s)	973
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	5 cut(s)	434, 457, 467, 593, 949
AhdI	GACNNNNNGTC	1 cut(s)	908
AjnI	CCWGG	3 cut(s)	358, 403, 601
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	2 cut(s)	312, 727
AluBI	AGCT	3 cut(s)	290, 698, 771
AluI	AGCT	3 cut(s)	290, 698, 771
Alw26I	GTCTC	1 cut(s)	574
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	719
ApeKI	GCWGC	3 cut(s)	60, 833, 836
ApoI	RAATTY	1 cut(s)	532
AseI	ATTAAT	1 cut(s)	1064
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	1007
AsuHPI	GGTGA	1 cut(s)	832
AvaII	GGWCC	1 cut(s)	1007
AxyI	CCTNAGG	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	561
BanI	GGYRCC	1 cut(s)	734
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
BbsI	GAAGAC	2 cut(s)	656, 956
BbvI	GCAGC	3 cut(s)	72, 820, 848
BccI	CCATC	7 cut(s)	344, 811, 811, 841, 946, 971, 975
BceAI	ACGGC	1 cut(s)	969
BciT130I	CCWGG	3 cut(s)	360, 405, 603
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	3 cut(s)	90, 276, 473
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	1 cut(s)	274
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	3 cut(s)	61, 834, 837
BlsI	GCNGC	3 cut(s)	62, 835, 838
Bme1390I	CCNGG	3 cut(s)	360, 405, 603
Bme18I	GGWCC	1 cut(s)	1007
BmeRI	GACNNNNNGTC	1 cut(s)	908
BmgT120I	GGNCC	1 cut(s)	1007
BmiI	GGNNCC	1 cut(s)	736
BmrFI	CCNGG	3 cut(s)	360, 405, 603
BmrI	ACTGGG	2 cut(s)	190, 700
BmsI	GCATC	3 cut(s)	363, 725, 778
BmuI	ACTGGG	2 cut(s)	190, 700
BpiI	GAAGAC	2 cut(s)	656, 956
BpmI	CTGGAG	1 cut(s)	784
BsaJI	CCNNGG	4 cut(s)	358, 561, 602, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	973
Bse1I	ACTGG	2 cut(s)	185, 706
Bse21I	CCTNAGG	1 cut(s)	483
BseBI	CCWGG	3 cut(s)	360, 405, 603
BseDI	CCNNGG	4 cut(s)	358, 561, 602, 1010
BseGI	GGATG	6 cut(s)	253, 354, 571, 611, 982, 986
BseLI	CCNNNNNNNGG	1 cut(s)	973
BseMII	CTCAG	2 cut(s)	123, 474
BseNI	ACTGG	2 cut(s)	185, 706
BseRI	GAGGAG	1 cut(s)	781
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	72, 820, 848
BseYI	CCCAGC	1 cut(s)	750
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	493
BshNI	GGYRCC	1 cut(s)	734
BslFI	GGGAC	2 cut(s)	197, 619
BslI	CCNNNNNNNGG	1 cut(s)	973
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	2 cut(s)	197, 619
BsmI	GAATGC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	395, 469, 1047
BspACI	CCGC	4 cut(s)	122, 518, 851, 985
BspCNI	CTCAG	2 cut(s)	124, 475
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	736
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	734
BsrI	ACTGG	2 cut(s)	185, 706
BssECI	CCNNGG	4 cut(s)	358, 561, 602, 1010
BssMI	GATC	3 cut(s)	395, 469, 1047
BssNAI	GTATAC	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	561
Bst1107I	GTATAC	1 cut(s)	550
Bst2UI	CCWGG	3 cut(s)	360, 405, 603
Bst4CI	ACNGT	5 cut(s)	36, 145, 826, 892, 1014
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	520, 714, 841
BstDEI	CTNAG	2 cut(s)	132, 483
BstDSI	CCRYGG	1 cut(s)	1010
BstENI	CCTNNNNNAGG	1 cut(s)	971
BstF5I	GGATG	6 cut(s)	253, 354, 571, 611, 982, 986
BstFNI	CGCG	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	3 cut(s)	398, 472, 1050
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	3 cut(s)	395, 469, 1047
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 360
BstNI	CCWGG	3 cut(s)	360, 405, 603
BstNSI	RCATGY	2 cut(s)	481, 526
BstSCI	CCNGG	3 cut(s)	358, 403, 601
BstSFI	CTRYAG	1 cut(s)	834
BstSLI	GKGCMC	1 cut(s)	561
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	3 cut(s)	72, 820, 848
BstV2I	GAAGAC	2 cut(s)	656, 956
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	1010
BtsCI	GGATG	6 cut(s)	253, 354, 571, 611, 982, 986
BtsI	GCAGTG	2 cut(s)	70, 519
BtsIMutI	CAGTG	3 cut(s)	70, 168, 519
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	520, 714, 841
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	1007
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	6 cut(s)	118, 310, 478, 523, 844, 913
DdeI	CTNAG	2 cut(s)	132, 483
DpnI	GATC	3 cut(s)	397, 471, 1049
DpnII	GATC	3 cut(s)	395, 469, 1047
DriI	GACNNNNNGTC	1 cut(s)	908
Eam1104I	CTCTTC	1 cut(s)	233
Eam1105I	GACNNNNNGTC	1 cut(s)	908
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	1007
Eco57I	CTGAAG	2 cut(s)	678, 890
Eco81I	CCTNAGG	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	971
EcoRII	CCWGG	3 cut(s)	358, 403, 601
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	6 cut(s)	121, 313, 481, 526, 847, 916
FalI	AAGNNNNNCTT	2 cut(s)	951, 983
FaqI	GGGAC	2 cut(s)	197, 619
FatI	CATG	6 cut(s)	117, 309, 477, 522, 843, 912
FauI	CCCGC	3 cut(s)	511, 844, 978
FauNDI	CATATG	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	61, 834, 837
FokI	GGATG	6 cut(s)	240, 341, 578, 598, 989, 993
Fsp4HI	GCNGC	3 cut(s)	61, 834, 837
FspBI	CTAG	3 cut(s)	90, 276, 473
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	3 cut(s)	61, 834, 837
GsaI	CCCAGC	1 cut(s)	754
GsuI	CTGGAG	1 cut(s)	784
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	6 cut(s)	121, 313, 481, 526, 847, 916
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	300
HphI	GGTGA	1 cut(s)	832
Hpy166II	GTNNAC	2 cut(s)	550, 1010
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	4 cut(s)	297, 473, 763, 895
Hpy8I	GTNNAC	2 cut(s)	550, 1010
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	5 cut(s)	36, 145, 826, 892, 1014
HpyCH4V	TGCA	8 cut(s)	40, 283, 506, 512, 618, 722, 791, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 360
HpyF3I	CTNAG	2 cut(s)	132, 483
Hsp92II	CATG	6 cut(s)	121, 313, 481, 526, 847, 916
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	3 cut(s)	395, 469, 1047
LmnI	GCTCC	1 cut(s)	768
Lsp1109I	GCAGC	3 cut(s)	72, 820, 848
LweI	GCATC	3 cut(s)	363, 725, 778
MaeI	CTAG	3 cut(s)	90, 276, 473
MaeIII	GTNAC	5 cut(s)	139, 700, 820, 1026, 1051
MalI	GATC	3 cut(s)	397, 471, 1049
MboI	GATC	3 cut(s)	395, 469, 1047
MboII	GAAGA	8 cut(s)	30, 95, 122, 220, 479, 656, 808, 961
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	6 cut(s)	4, 27, 501, 532, 919, 1061
MluI	ACGCGT	1 cut(s)	491
MmeI	TCCRAC	3 cut(s)	171, 281, 910
MnlI	CCTC	8 cut(s)	127, 365, 478, 674, 759, 874, 967, 992
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	4 cut(s)	341, 969, 1019, 1064
MslI	CAYNNNNRTG	3 cut(s)	122, 312, 727
MspA1I	CMGCKG	1 cut(s)	698
MspR9I	CCNGG	3 cut(s)	360, 405, 603
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	3 cut(s)	360, 405, 603
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	242, 360
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	3 cut(s)	395, 469, 1047
NlaIII	CATG	6 cut(s)	121, 313, 481, 526, 847, 916
NlaIV	GGNNCC	1 cut(s)	736
NmuCI	GTSAC	4 cut(s)	139, 700, 820, 1026
NspI	RCATGY	2 cut(s)	481, 526
OliI	CACNNNNGTG	2 cut(s)	312, 727
PctI	GAATGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	300
PflFI	GACNNNGTC	2 cut(s)	706, 890
PkrI	GCNGC	3 cut(s)	62, 835, 838
PshBI	ATTAAT	1 cut(s)	1064
PsiI	TTATAA	1 cut(s)	872
Psp6I	CCWGG	3 cut(s)	358, 403, 601
PspFI	CCCAGC	1 cut(s)	750
PspGI	CCWGG	3 cut(s)	358, 403, 601
PspN4I	GGNNCC	1 cut(s)	736
PspPI	GGNCC	1 cut(s)	1007
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	469
PsyI	GACNNNGTC	2 cut(s)	706, 890
PvuII	CAGCTG	1 cut(s)	698
RseI	CAYNNNNRTG	3 cut(s)	122, 312, 727
SaqAI	TTAA	4 cut(s)	341, 969, 1019, 1064
SatI	GCNGC	3 cut(s)	61, 834, 837
Sau3AI	GATC	3 cut(s)	395, 469, 1047
Sau96I	GGNCC	1 cut(s)	1007
ScrFI	CCNGG	3 cut(s)	360, 405, 603
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	9 cut(s)	191, 206, 288, 292, 376, 664, 700, 773, 912
SfaNI	GCATC	3 cut(s)	363, 725, 778
SfcI	CTRYAG	1 cut(s)	834
SinI	GGWCC	1 cut(s)	1007
SmiMI	CAYNNNNRTG	3 cut(s)	122, 312, 727
Sse9I	AATT	6 cut(s)	4, 27, 501, 532, 919, 1061
SsiI	CCGC	4 cut(s)	122, 518, 851, 985
SspMI	CTAG	3 cut(s)	90, 276, 473
StyD4I	CCNGG	3 cut(s)	358, 403, 601
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	5 cut(s)	36, 145, 826, 892, 1014
TasI	AATT	6 cut(s)	4, 27, 501, 532, 919, 1061
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	4 cut(s)	341, 969, 1019, 1064
Tru9I	TTAA	4 cut(s)	341, 969, 1019, 1064
TscAI	CASTG	3 cut(s)	70, 175, 519
TseFI	GTSAC	4 cut(s)	139, 700, 820, 1026
TseI	GCWGC	3 cut(s)	60, 833, 836
Tsp45I	GTSAC	4 cut(s)	139, 700, 820, 1026
TspDTI	ATGAA	3 cut(s)	17, 197, 1074
TspRI	CASTG	3 cut(s)	70, 175, 519
Tth111I	GACNNNGTC	2 cut(s)	706, 890
VpaK11BI	GGWCC	1 cut(s)	1007
VspI	ATTAAT	1 cut(s)	1064
XagI	CCTNNNNNAGG	1 cut(s)	971
XapI	RAATTY	1 cut(s)	532
XbaI	TCTAGA	1 cut(s)	472
XceI	RCATGY	2 cut(s)	481, 526
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	3 cut(s)	90, 276, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.