Rorug04G0044900
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002882
Physical Location & Seq
Forward (+)
6989590 .. 6990191
602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0044900.1

Sequence Viewer

Length: 294 bp
ATGTCTGCAGTTCAAGCTGAAAAGCCCGGCGATGTGACATGTCTGGCTACCATTCCATCTGAGATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATGGTATAGTTGCTGGAATTGCACTTGCAGAGATAGTATTTTATGAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGATGGAGACTCCGTACATAAAGGCTTAGAGTCTGGAAAAGTTTATGGTAACTCCGGAGTATCAGTAATCTTTCTTGTCCTAGTTGTTTATGGGGATTTTGCTATAGACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

97

Amino Acids

10.33

Weight (kDa)

4.36

Isoelectric Point (pI)

13.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QRPTase_N PF02749 11 - 76 5e-12 Quinolinate phosphoribosyl transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 233
AclWI GGATC 1 cut(s) 143
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 2 cut(s) 17, 291
AluI AGCT 2 cut(s) 17, 291
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 27
BccI CCATC 3 cut(s) 58, 64, 176
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 260, 292
BfmI CTRYAG 2 cut(s) 6, 282
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseAI TCCGGA 1 cut(s) 233
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 51
BsiSI CCGG 2 cut(s) 27, 234
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 52
BspEI TCCGGA 1 cut(s) 233
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 143
BssMI GATC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 60, 205
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 14, 116
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 2 cut(s) 6, 282
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 187
Csp6I GTAC 1 cut(s) 194
CviAII CATG 1 cut(s) 39
CviJI RGCY 6 cut(s) 17, 25, 47, 77, 204, 291
CviKI_1 RGCY 6 cut(s) 17, 25, 47, 77, 204, 291
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 2 cut(s) 60, 205
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
FaeI CATG 1 cut(s) 42
FaiI YATR 7 cut(s) 40, 104, 141, 198, 225, 270, 284
FatI CATG 1 cut(s) 38
FokI GGATG 1 cut(s) 194
FspBI CTAG 2 cut(s) 260, 292
HapII CCGG 2 cut(s) 27, 234
Hin1II CATG 1 cut(s) 42
HinfI GANTC 2 cut(s) 188, 209
HpaII CCGG 2 cut(s) 27, 234
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 213, 234
HpyCH4V TGCA 3 cut(s) 8, 119, 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 116
HpyF3I CTNAG 2 cut(s) 60, 205
Hsp92II CATG 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 29, 40, 96, 198, 247
MaeI CTAG 2 cut(s) 260, 292
MaeIII GTNAC 3 cut(s) 34, 171, 227
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MluCI AATT 1 cut(s) 114
MlyI GAGTC 2 cut(s) 182, 218
MroI TCCGGA 1 cut(s) 233
MspI CCGG 2 cut(s) 27, 234
MspR9I CCNGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 14, 116
NciI CCSGG 1 cut(s) 27
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 34, 171
NspI RCATGY 1 cut(s) 42
PciI ACATGT 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 85
PleI GAGTC 2 cut(s) 182, 217
PpsI GAGTC 2 cut(s) 182, 217
PscI ACATGT 1 cut(s) 38
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 2 cut(s) 182, 218
ScrFI CCNGG 1 cut(s) 27
SetI ASST 3 cut(s) 19, 165, 293
SfcI CTRYAG 2 cut(s) 6, 282
Sse9I AATT 1 cut(s) 114
SspMI CTAG 2 cut(s) 260, 292
StyD4I CCNGG 1 cut(s) 25
TasI AATT 1 cut(s) 114
TseFI GTSAC 2 cut(s) 34, 171
Tsp45I GTSAC 2 cut(s) 34, 171
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 85
XceI RCATGY 1 cut(s) 42
XspI CTAG 2 cut(s) 260, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.