Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024048.1

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Forward (+)

5931 .. 11348

Gene Structure 5418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024048.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgtcggtggaagctgaggttgagacagcggcggagttggcccttgccgatactaatgtcaactgggacaggttggacaagacgaggttccatataattggggctattctcttcaccgtgcaatcagccttactacacccaacatcagttgtgaaaaccagaatgcaagtagactctggactctctcacatgagtggaacatcagtatttaagcagatattaaagacagatggaatccctggagtcttcaggggttttggcacttctgcaattggatcattgcctggtagggtcttggctttgacatcgcttgaagtatcaaaggatatgatgttcaagtacactgaaggactaaagatgcctgaagctacacgtattggtattgcaaatggagtggcgggcatgttctcaaatttcatttcttgtgcatactatgtacccttggatgtgacttgccagagactaatggttcaaggactttctgggactacatcctgcaaccgaccatttgaaatcataagtaaagttatagaggctgaaggttttcgtggtctgtacagaggcttttggttgacagctctgagccagtcgccggcatctgcgctttggtggggagcctatggttctgcccaacacatgatctggaggagtttgggctatagtgataaagaccaacaaaagccatctcatatggagatggtgacagttcaggctacagctggtatgatggctggtgctttgtcctctgtcatcactactcctattgacacaatcaagacacgacttcagaaagatatgcgtattcttatggtgggtcttgatgctgctggtaaaaccaccattttgtataagctcaagttaggcgaaatcgttaccaccattcctaccattggatttaatgtggaaactgtggaatacaaaaacatcagcttcacagtgtgggatgttgggggccaagacaagattcgaccactatggagacactacttccaaaacacacaagggcttgtctttgtgattgacagcaatgatcgagatcgtgttgttgaggctaaagatgagctgcacaggatgttgaatgaggacgagttgagggatgctgtgcttcttgtgtttgcaaacaagcaagatcttccaaatgcaatgaatgctgctgagatcaccgataagcttggccttcattctcttcgacaacgccattggtatatccagagtacatgtgctacttccggtgaaggattgtacgagggattggactggctttcaaacaacattgctaacaaggcatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

430

Amino Acids

47.6

Weight (kDa)

6.52

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	3 cut(s)	29, 32, 398
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	5 cut(s)	232, 366, 384, 558, 770
AdeI	CACNNNGTG	1 cut(s)	939
AfaI	GTAC	5 cut(s)	341, 438, 557, 1216, 1244
AfiI	CCNNNNNNNGG	2 cut(s)	592, 890
AflIII	ACRYGT	2 cut(s)	371, 1217
AgsI	TTSAA	6 cut(s)	314, 337, 473, 512, 1078, 1266
AjnI	CCWGG	2 cut(s)	238, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	948, 980
AleI	CACNNNNGTG	1 cut(s)	192
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	8 cut(s)	14, 368, 578, 719, 853, 930, 1063, 1171
AluI	AGCT	8 cut(s)	14, 368, 578, 719, 853, 930, 1063, 1171
Alw26I	GTCTC	3 cut(s)	17, 454, 973
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	3 cut(s)	39, 952, 1174
ApeKI	GCWGC	3 cut(s)	824, 1063, 1151
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	40, 952
AsuHPI	GGTGA	4 cut(s)	106, 712, 1153, 1244
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BbsI	GAAGAC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	811, 1050, 1138
BccI	CCATC	4 cut(s)	224, 691, 691, 721
BciT130I	CCWGG	2 cut(s)	240, 285
BcoDI	GTCTC	3 cut(s)	17, 454, 973
BfmI	CTRYAG	2 cut(s)	658, 714
BglII	AGATCT	1 cut(s)	1129
BisI	GCNGC	4 cut(s)	30, 825, 1064, 1152
BlsI	GCNGC	4 cut(s)	31, 826, 1065, 1153
Bme1390I	CCNGG	2 cut(s)	240, 285
BmgT120I	GGNCC	2 cut(s)	40, 952
BmiI	GGNNCC	3 cut(s)	89, 616, 953
BmrFI	CCNGG	2 cut(s)	240, 285
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	4 cut(s)	348, 605, 811, 1087
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	2 cut(s)	261, 664
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	839
BsaAI	YACGTR	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaJI	CCNNGG	2 cut(s)	238, 441
BsaWI	WCCGGW	1 cut(s)	1229
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 890
Bse118I	RCCGGY	1 cut(s)	592
Bse1I	ACTGG	3 cut(s)	68, 586, 1262
Bse3DI	GCAATG	4 cut(s)	278, 1033, 1149, 1272
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	240, 285
BseDI	CCNNGG	2 cut(s)	238, 441
BseGI	GGATG	5 cut(s)	451, 491, 949, 1077, 1102
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	2 cut(s)	592, 890
BseMI	GCAATG	4 cut(s)	278, 1033, 1149, 1272
BseMII	CTCAG	3 cut(s)	6, 572, 1146
BseNI	ACTGG	3 cut(s)	68, 586, 1262
BseRI	GAGGAG	1 cut(s)	661
BseXI	GCAGC	3 cut(s)	811, 1050, 1138
BsgI	GTGCAG	1 cut(s)	1049
BshFI	GGCC	3 cut(s)	41, 954, 1176
BsiSI	CCGG	2 cut(s)	593, 1230
BslFI	GGGAC	2 cut(s)	80, 499
BslI	CCNNNNNNNGG	2 cut(s)	592, 890
BsmAI	GTCTC	3 cut(s)	17, 454, 973
BsmFI	GGGAC	2 cut(s)	80, 499
BsmI	GAATGC	2 cut(s)	168, 1153
BsnI	GGCC	3 cut(s)	41, 954, 1176
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
BspACI	CCGC	3 cut(s)	29, 32, 398
BspANI	GGCC	3 cut(s)	41, 954, 1176
BspCNI	CTCAG	3 cut(s)	7, 573, 1147
BspLI	GGNNCC	3 cut(s)	89, 616, 953
BspPI	GGATC	1 cut(s)	283
BsrDI	GCAATG	4 cut(s)	278, 1033, 1149, 1272
BsrFI	RCCGGY	1 cut(s)	592
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	68, 586, 1262
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	238, 441
BssMI	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	240, 285
Bst4CI	ACNGT	4 cut(s)	118, 706, 910, 937
Bst6I	CTCTTC	2 cut(s)	116, 1191
BstAPI	GCANNNNNTGC	1 cut(s)	1148
BstAUI	TGTACA	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	400, 594
BstDEI	CTNAG	3 cut(s)	15, 581, 1155
BstF5I	GGATG	5 cut(s)	451, 491, 949, 1077, 1102
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	6 cut(s)	278, 642, 1033, 1039, 1132, 1161
BstMAI	GTCTC	3 cut(s)	17, 454, 973
BstMBI	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 1148, 1283
BstNI	CCWGG	2 cut(s)	240, 285
BstNSI	RCATGY	3 cut(s)	406, 1221, 1290
BstSCI	CCNGG	2 cut(s)	238, 283
BstSFI	CTRYAG	2 cut(s)	658, 714
BstV1I	GCAGC	3 cut(s)	811, 1050, 1138
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	1129
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	1129
BsuRI	GGCC	3 cut(s)	41, 954, 1176
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	5 cut(s)	451, 491, 949, 1077, 1102
BtsIMutI	CAGTG	2 cut(s)	342, 942
Cac8I	GCNNGC	2 cut(s)	400, 594
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	40, 952
Csp6I	GTAC	5 cut(s)	340, 437, 556, 1215, 1243
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	5 cut(s)	190, 403, 637, 1218, 1287
CviQI	GTAC	5 cut(s)	340, 437, 556, 1215, 1243
DdeI	CTNAG	3 cut(s)	15, 581, 1155
DpnI	GATC	6 cut(s)	277, 641, 1032, 1038, 1131, 1160
DpnII	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
DraIII	CACNNNGTG	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	116, 1191
EarI	CTCTTC	2 cut(s)	116, 1191
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	441
Eco57I	CTGAAG	5 cut(s)	232, 366, 384, 558, 770
EcoRII	CCWGG	2 cut(s)	238, 283
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	5 cut(s)	193, 406, 640, 1221, 1290
FaqI	GGGAC	2 cut(s)	80, 499
FatI	CATG	5 cut(s)	189, 402, 636, 1217, 1286
FauI	CCCGC	1 cut(s)	391
FauNDI	CATATG	1 cut(s)	690
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	4 cut(s)	30, 825, 1064, 1152
FokI	GGATG	5 cut(s)	458, 478, 956, 1084, 1109
Fsp4HI	GCNGC	4 cut(s)	30, 825, 1064, 1152
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	4 cut(s)	30, 825, 1064, 1152
GsuI	CTGGAG	2 cut(s)	261, 664
HaeIII	GGCC	3 cut(s)	41, 954, 1176
HapII	CCGG	2 cut(s)	593, 1230
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	5 cut(s)	193, 406, 640, 1221, 1290
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HincII	GTYRAC	2 cut(s)	61, 573
HindII	GTYRAC	2 cut(s)	61, 573
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	5 cut(s)	173, 180, 234, 243, 964
HpaII	CCGG	2 cut(s)	593, 1230
HphI	GGTGA	4 cut(s)	106, 712, 1153, 1244
Hpy166II	GTNNAC	4 cut(s)	61, 172, 342, 573
Hpy188I	TCNGA	2 cut(s)	582, 789
Hpy188III	TCNNGA	6 cut(s)	177, 643, 775, 818, 1034, 1210
Hpy8I	GTNNAC	4 cut(s)	61, 172, 342, 573
HpyAV	CCTTC	4 cut(s)	341, 533, 1187, 1229
HpyCH4III	ACNGT	4 cut(s)	118, 706, 910, 937
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	9 cut(s)	121, 166, 269, 386, 428, 498, 1066, 1118, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 1148, 1283
HpyF3I	CTNAG	3 cut(s)	15, 581, 1155
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	5 cut(s)	193, 406, 640, 1221, 1290
HspAI	GCGC	1 cut(s)	602
KroI	GCCGGC	1 cut(s)	592
KroNI	GCCGGC	1 cut(s)	594
Kzo9I	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	3 cut(s)	811, 1050, 1138
LweI	GCATC	4 cut(s)	348, 605, 811, 1087
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	3 cut(s)	448, 700, 871
MalI	GATC	6 cut(s)	277, 641, 1032, 1038, 1131, 1160
MboI	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
MboII	GAAGA	4 cut(s)	103, 238, 1124, 1178
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	1129
MluCI	AATT	3 cut(s)	96, 270, 412
MlyI	GAGTC	3 cut(s)	167, 174, 252
MmeI	TCCRAC	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	3 cut(s)	210, 221, 897
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	29, 719
MspI	CCGG	2 cut(s)	593, 1230
MspR9I	CCNGG	2 cut(s)	240, 285
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	2 cut(s)	168, 1153
MvaI	CCWGG	2 cut(s)	240, 285
MwoI	GCNNNNNNNGC	3 cut(s)	38, 1148, 1283
NaeI	GCCGGC	1 cut(s)	594
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
NgoMIV	GCCGGC	1 cut(s)	592
NlaIII	CATG	5 cut(s)	193, 406, 640, 1221, 1290
NlaIV	GGNNCC	3 cut(s)	89, 616, 953
NmuCI	GTSAC	2 cut(s)	448, 700
NspI	RCATGY	3 cut(s)	406, 1221, 1290
OliI	CACNNNNGTG	1 cut(s)	192
PciI	ACATGT	1 cut(s)	1217
PctI	GAATGC	2 cut(s)	168, 1153
PdiI	GCCGGC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	234, 964
PkrI	GCNGC	4 cut(s)	31, 826, 1065, 1153
PleI	GAGTC	3 cut(s)	167, 174, 251
PpsI	GAGTC	3 cut(s)	167, 174, 251
Ppu21I	YACGTR	1 cut(s)	374
PscI	ACATGT	1 cut(s)	1217
Psp6I	CCWGG	2 cut(s)	238, 283
PspGI	CCWGG	2 cut(s)	238, 283
PspN4I	GGNNCC	3 cut(s)	89, 616, 953
PspPI	GGNCC	2 cut(s)	40, 952
PsuI	RGATCY	1 cut(s)	1129
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	5 cut(s)	341, 438, 557, 1216, 1244
RsaNI	GTAC	5 cut(s)	340, 437, 556, 1215, 1243
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	210, 221, 897
SatI	GCNGC	4 cut(s)	30, 825, 1064, 1152
Sau3AI	GATC	6 cut(s)	275, 639, 1030, 1036, 1129, 1158
Sau96I	GGNCC	2 cut(s)	40, 952
SchI	GAGTC	3 cut(s)	167, 174, 252
ScrFI	CCNGG	2 cut(s)	240, 285
SfaNI	GCATC	4 cut(s)	348, 605, 811, 1087
SfcI	CTRYAG	2 cut(s)	658, 714
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	3 cut(s)	96, 270, 412
SsiI	CCGC	3 cut(s)	29, 32, 398
StyD4I	CCNGG	2 cut(s)	238, 283
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	118, 706, 910, 937
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	3 cut(s)	967, 1033, 1189
TasI	AATT	3 cut(s)	96, 270, 412
TatI	WGTACW	3 cut(s)	339, 555, 1214
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	234, 964
Tru1I	TTAA	3 cut(s)	210, 221, 897
Tru9I	TTAA	3 cut(s)	210, 221, 897
TscAI	CASTG	2 cut(s)	349, 942
TseFI	GTSAC	2 cut(s)	448, 700
TseI	GCWGC	3 cut(s)	824, 1063, 1151
Tsp45I	GTSAC	2 cut(s)	448, 700
TspDTI	ATGAA	3 cut(s)	406, 1160, 1169
TspRI	CASTG	2 cut(s)	349, 942
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	3 cut(s)	406, 1221, 1290
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.