Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002882

Physical Location & Seq

Genomic Coordinates Forward (+)

58549865 .. 58553301

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCGGTGGAAGCTGAGGTTGAGACAGCGGCGGAGTTGGCCCTTGCCGATACTAATGTCAACTGGGACAGGTTGGACAAGACGAGGTTCCATATAATTGGGGCTATTCTCTTCACCGTGCAATCAGCCTTACTACACCCAACATCAGTTGTGAAAACCAGAATGCAAGTAGACTCTGGACTCTCTCACATGAGTGGAACATCAGTATTTAAACAGATATTAAAGACAGATGGAATCCCTGGAGTCTTCAGGGGTTTTGGCACTTCTGCAATTGGATCATTGCCTGGTAGGGTCTTGGCTTTGACATCGCTTGAAGTATCAAAGGATATGATGTTCAAGTACACTGAAGGTCTAAAGATGCCTGAAGCTACACGTATTGGTATTGCAAATGGAGTGGCGGGCATGTTCTCAAATTTCATTTCTTGTGCATACTATGTACCCTTGGATGTGACTTGCCAGAGACTAATGGTTCAAGGACCTTCTGGGACTACATCCTGCAACCGACCATTTGAAATCGTAAGTAAAGTTATAGAGGCTGAAGGTTTTCGTGGTCTGTACAGAGGCTTTGGGTTGACAGCTCTGAGCCAGTCGCCAGCATCTGCGCTTTGGTGGGGAGCCTATGGTTCTGCCCAACACATGATCTGGAGGAGTTTGGGCTATAGTGATAAAGACCAACAAAAGCCATCTCATATGGAGATGGTGACAGTTCAGGCTACAGCTGGTATGATGGCTGGTGCTTTGTCCTCTGTCATCACTACTCCTATTGACACAATCAAGACACGACTTCAGGTCATGGATAACTATGGTGCTGGAAGACCAACAGTATTGAAGACAGCAAAGACACTCCTTGAAGAAGATGGATGGTGGGGCTTTTACAGAGGATTTGGTCCGCGGTTCTTAAATATGTCACTCTATGGAACTACAATGATAGTCACTTATGAACTGATCAGTAAGTTAGCCTCTCCATTACTTTTCTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

327

Amino Acids

35.72

Weight (kDa)

8.67

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 114	4e-14	Mitochondrial carrier protein
Mito_carr	PF00153	129 - 216	5.8e-16	Mitochondrial carrier protein
Mito_carr	PF00153	236 - 319	5.7e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24765 AT2G24765
fragaria_vesca	FvH4_4g08930 FvH4_4g08930 FvH4_4g08930 FvH4_4g21050 FvH4_4g21050
malus_domestica	MD13G1144600.v1.1 MD13G1264600.v1.1 MD16G1265400.v1.1
prunus_persica	Prupe.1G092100_v2.0.a1 Prupe.1G109500_v2.0.a1 Prupe.1G109500_v2.0.a1
pyrus_communis	pycom13g12510 pycom13g23760 pycom16g23490
rosa_chinensis	RchiOBHm_Chr4g0403661 RchiOBHm_Chr4g0426581
rosa_laevigata	RLG00000007288 RLG00000008961
rosa_multiflora	Rmu_sc0006376.1_g000005 Rmu_sc0024048.1_g000002 Rmu_sc0026566.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348260 Rroxscaffold_5G00368620
rosa_rugosa	Rorug04G0044900 Rorug04G0045000 Rorug04G0213600 Rorug04G0213700
rosa_samantha	Rh4AG119900 Rh4AG268800 Rh4BG275100 Rh4CG128100 Rh4CG289400 Rh4DG112600 Rh4DG271900
rosa_wichuraiana	Rw4G009740 Rw4G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	892
AciI	CCGC	5 cut(s)	29, 32, 398, 890, 892
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	5 cut(s)	232, 366, 384, 558, 770
AfaI	GTAC	3 cut(s)	341, 438, 557
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	6 cut(s)	314, 337, 473, 512, 829, 851
AhdI	GACNNNNNGTC	1 cut(s)	788
AjnI	CCWGG	2 cut(s)	238, 283
AleI	CACNNNNGTG	1 cut(s)	192
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	4 cut(s)	14, 368, 578, 719
AluI	AGCT	4 cut(s)	14, 368, 578, 719
Alw26I	GTCTC	2 cut(s)	17, 454
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	3 cut(s)	40, 476, 887
AsuHPI	GGTGA	2 cut(s)	106, 712
AvaII	GGWCC	2 cut(s)	476, 887
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BbsI	GAAGAC	3 cut(s)	238, 820, 836
BbvCI	CCTCAGC	1 cut(s)	15
BccI	CCATC	6 cut(s)	224, 691, 691, 721, 851, 855
BciT130I	CCWGG	2 cut(s)	240, 285
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	2 cut(s)	17, 454
BfmI	CTRYAG	2 cut(s)	658, 714
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	240, 285
Bme18I	GGWCC	2 cut(s)	476, 887
BmeRI	GACNNNNNGTC	1 cut(s)	788
BmgT120I	GGNCC	3 cut(s)	40, 476, 887
BmiI	GGNNCC	2 cut(s)	89, 616
BmrFI	CCNGG	2 cut(s)	240, 285
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	348, 605
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	3 cut(s)	238, 820, 836
BpmI	CTGGAG	2 cut(s)	261, 664
Bpu10I	CCTNAGC	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	238, 441, 890
Bse1I	ACTGG	2 cut(s)	68, 586
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	240, 285
BseDI	CCNNGG	3 cut(s)	238, 441, 890
BseGI	GGATG	3 cut(s)	451, 491, 866
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	6, 572
BseNI	ACTGG	2 cut(s)	68, 586
BseRI	GAGGAG	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	892
BshFI	GGCC	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	80, 499
BsmAI	GTCTC	2 cut(s)	17, 454
BsmFI	GGGAC	2 cut(s)	80, 499
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	275, 639, 945
BspACI	CCGC	5 cut(s)	29, 32, 398, 890, 892
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	7, 573
BspFNI	CGCG	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	89, 616
BspPI	GGATC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	68, 586
BssECI	CCNNGG	3 cut(s)	238, 441, 890
BssMI	GATC	3 cut(s)	275, 639, 945
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	240, 285
Bst4CI	ACNGT	3 cut(s)	118, 706, 823
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	400, 594
BstDEI	CTNAG	2 cut(s)	15, 581
BstDSI	CCRYGG	1 cut(s)	890
BstF5I	GGATG	3 cut(s)	451, 491, 866
BstFNI	CGCG	1 cut(s)	892
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	3 cut(s)	278, 642, 948
BstMAI	GTCTC	2 cut(s)	17, 454
BstMBI	GATC	3 cut(s)	275, 639, 945
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	2 cut(s)	240, 285
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	238, 283
BstSFI	CTRYAG	2 cut(s)	658, 714
BstUI	CGCG	1 cut(s)	892
BstV2I	GAAGAC	3 cut(s)	238, 820, 836
BstXI	CCANNNNNNTGG	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	890
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	451, 491, 866
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	400, 594
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	3 cut(s)	40, 476, 887
Cfr42I	CCGCGG	1 cut(s)	893
Csp6I	GTAC	3 cut(s)	340, 437, 556
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	4 cut(s)	190, 403, 637, 793
CviQI	GTAC	3 cut(s)	340, 437, 556
DdeI	CTNAG	2 cut(s)	15, 581
DpnI	GATC	3 cut(s)	277, 641, 947
DpnII	GATC	3 cut(s)	275, 639, 945
DraI	TTTAAA	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	788
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	476, 887
Eco57I	CTGAAG	5 cut(s)	232, 366, 384, 558, 770
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	238, 283
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	4 cut(s)	193, 406, 640, 796
FaqI	GGGAC	2 cut(s)	80, 499
FatI	CATG	4 cut(s)	189, 402, 636, 792
FauI	CCCGC	1 cut(s)	391
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	3 cut(s)	458, 478, 873
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	2 cut(s)	261, 664
HaeIII	GGCC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	4 cut(s)	193, 406, 640, 796
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HincII	GTYRAC	2 cut(s)	61, 573
HindII	GTYRAC	2 cut(s)	61, 573
HinfI	GANTC	4 cut(s)	173, 180, 234, 243
HphI	GGTGA	2 cut(s)	106, 712
Hpy166II	GTNNAC	4 cut(s)	61, 172, 342, 573
Hpy188I	TCNGA	1 cut(s)	582
Hpy188III	TCNNGA	3 cut(s)	177, 643, 775
Hpy8I	GTNNAC	4 cut(s)	61, 172, 342, 573
HpyAV	CCTTC	3 cut(s)	341, 489, 533
HpyCH4III	ACNGT	3 cut(s)	118, 706, 823
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	6 cut(s)	121, 166, 269, 386, 428, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	15, 581
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	193, 406, 640, 796
HspAI	GCGC	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	945
KspI	CCGCGG	1 cut(s)	893
Kzo9I	GATC	3 cut(s)	275, 639, 945
LmnI	GCTCC	1 cut(s)	614
LweI	GCATC	2 cut(s)	348, 605
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	4 cut(s)	448, 700, 906, 931
MalI	GATC	3 cut(s)	277, 641, 947
MboI	GATC	3 cut(s)	275, 639, 945
MboII	GAAGA	6 cut(s)	103, 238, 825, 841, 863, 866
MfeI	CAATTG	1 cut(s)	270
MluCI	AATT	3 cut(s)	96, 270, 412
MlyI	GAGTC	3 cut(s)	167, 174, 252
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	8 cut(s)	10, 78, 526, 554, 639, 754, 872, 970
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	4 cut(s)	210, 221, 899, 982
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	3 cut(s)	29, 719, 892
MspR9I	CCNGG	2 cut(s)	240, 285
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	2 cut(s)	240, 285
MvnI	CGCG	1 cut(s)	892
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	3 cut(s)	275, 639, 945
NlaIII	CATG	4 cut(s)	193, 406, 640, 796
NlaIV	GGNNCC	2 cut(s)	89, 616
NmuCI	GTSAC	4 cut(s)	448, 700, 906, 931
NspI	RCATGY	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	192
PctI	GAATGC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	3 cut(s)	167, 174, 251
PpsI	GAGTC	3 cut(s)	167, 174, 251
Ppu21I	YACGTR	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	238, 283
PspGI	CCWGG	2 cut(s)	238, 283
PspN4I	GGNNCC	2 cut(s)	89, 616
PspPI	GGNCC	3 cut(s)	40, 476, 887
PspPPI	RGGWCCY	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	341, 438, 557
RsaNI	GTAC	3 cut(s)	340, 437, 556
RseI	CAYNNNNRTG	1 cut(s)	192
SacII	CCGCGG	1 cut(s)	893
SaqAI	TTAA	4 cut(s)	210, 221, 899, 982
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	275, 639, 945
Sau96I	GGNCC	3 cut(s)	40, 476, 887
SchI	GAGTC	3 cut(s)	167, 174, 252
ScrFI	CCNGG	2 cut(s)	240, 285
SfaNI	GCATC	2 cut(s)	348, 605
SfcI	CTRYAG	2 cut(s)	658, 714
Sfr303I	CCGCGG	1 cut(s)	893
SgrBI	CCGCGG	1 cut(s)	893
SinI	GGWCC	2 cut(s)	476, 887
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	96, 270, 412
SsiI	CCGC	5 cut(s)	29, 32, 398, 890, 892
StyD4I	CCNGG	2 cut(s)	238, 283
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	118, 706, 823
TaiI	ACGT	1 cut(s)	376
TasI	AATT	3 cut(s)	96, 270, 412
TatI	WGTACW	2 cut(s)	339, 555
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	4 cut(s)	210, 221, 899, 982
Tru9I	TTAA	4 cut(s)	210, 221, 899, 982
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	4 cut(s)	448, 700, 906, 931
Tsp45I	GTSAC	4 cut(s)	448, 700, 906, 931
TspDTI	ATGAA	2 cut(s)	406, 954
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	476, 887
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.