Rh4AG119900
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002882
Physical Location & Seq
Forward (+)
25897265 .. 25903330
6066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG119900.1

Sequence Viewer

Length: 390 bp
ATGTGTTATTGTGGTTTGCATTGTTTCTCTGAAAGCTCAATATATATGTTGGCTTTGTGCCACAGGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATCTATGTTGTTGACTCTAGCGACACTGACAGGCTGGTAATAGCTAAAGAGGAGTTTCATGCTATCTTGGAGGAGGAAGAGTTGAAAGGTGCAGTTGTCCTTATTTTTGCCAATAAGCAGGATCTTCCTGGTGCACTTGATGATGCTGCAATAACTGAGGCCTTAGAGTTGCACAAGATAAAAAACCGTCAATGGTCTATCTTTAAAACTTCTGCCATAAAAGGCGAAGGTCTTTTTGAGGGCTTAGACTGGCTGAGTAACACACTGAAGTCTGGAGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

5.12

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 22 - 123 2.7e-41 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 234
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 36, 149
AluI AGCT 2 cut(s) 36, 149
Alw21I GWGCWC 1 cut(s) 241
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 1 cut(s) 234
AoxI GGCC 2 cut(s) 65, 264
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 68, 238
BpuEI CTTGAG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 252, 350
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 2 cut(s) 170, 191
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 2 cut(s) 67, 266
BsiHKAI GWGCWC 1 cut(s) 241
BsnI GGCC 2 cut(s) 67, 266
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 226
BspANI GGCC 2 cut(s) 67, 266
BspCNI CTCAG 2 cut(s) 253, 351
BspPI GGATC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 359
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 4 cut(s) 261, 268, 349, 359
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 2 cut(s) 67, 266
BtsIMutI CAGTG 2 cut(s) 129, 368
CviAII CATG 1 cut(s) 164
DdeI CTNAG 4 cut(s) 261, 268, 349, 359
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 167
FaiI YATR 8 cut(s) 43, 45, 47, 70, 104, 111, 165, 323
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 2 cut(s) 67, 266
Hin1II CATG 1 cut(s) 167
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 118, 239
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 2 cut(s) 118, 239
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 5 cut(s) 19, 197, 239, 254, 277
HpyF3I CTNAG 4 cut(s) 261, 268, 349, 359
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 49, 121, 125, 209, 219, 246, 340, 363
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 68, 238
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 362
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 194, 221
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 241
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 6 cut(s) 148, 169, 172, 256, 337, 374
MseI TTAA 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 167
PceI AGGCCT 1 cut(s) 266
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 226
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 241
SetI ASST 5 cut(s) 38, 151, 196, 337, 385
SfaNI GCATC 2 cut(s) 68, 238
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SseBI AGGCCT 1 cut(s) 266
SspMI CTAG 1 cut(s) 123
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 293
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 136, 375
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 136, 375
VneI GTGCAC 1 cut(s) 237
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.