Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Forward (+)

10753602 .. 10754935

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGAGTCGCTGTTCTTCATCCTCATGATTCTATAATCAATCATTTCTCCACAAACACGTCCCCTCCTCTCCGTCATAAAAAACCGATCACCAATCGCCGTCGCCGGAGTCCGTCAAGTCACCAATCCCAGATCTCTCATCCTCCTCCGTCTCCTCATAACCACACCAATCATGTACGAATTCTGAAGCGTGGCGAAGATATCAACGTTAAGATACCGATTGAAAAACCAGATCTGAAATCTAATCGTCAGATCGGATCAGATCCGATGAAAATTTCGACTCCGATCAGAATTTCAAATCGGAAATCCATGCCGGCTTTGTTTTACGCTGGTCCAGTCACATCAACATCTCCGCCGCCGAGTGAAGTCCCTTTACCGGCTTTCTTCGCTAATAAAACCGTCGCCGGATTCAAACCGACCGATGCAACCAACGATCTGATCAAAATCCTGCGATTAGATATCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

155

Amino Acids

17.19

Weight (kDa)

10.8

Isoelectric Point (pI)

69.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	353, 356
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	2 cut(s)	257, 265
AcsI	RAATTY	3 cut(s)	180, 273, 291
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	224, 297, 412
AjiI	CACGTC	1 cut(s)	60
AloI	GAACNNNNNNTCC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	257, 265
ApoI	RAATTY	3 cut(s)	180, 273, 291
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	82, 113
AvaII	GGWCC	1 cut(s)	332
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
BceAI	ACGGC	1 cut(s)	84
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	156
BglII	AGATCT	2 cut(s)	132, 232
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	332
BmsI	GCATC	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	443
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse118I	RCCGGY	2 cut(s)	313, 376
Bse1I	ACTGG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	443
BseGI	GGATG	2 cut(s)	19, 139
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	3 cut(s)	57, 135, 144
Bsh1285I	CGRYCG	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	420
BsiSI	CCGG	4 cut(s)	106, 314, 377, 405
BslFI	GGGAC	2 cut(s)	46, 353
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	46, 353
Bsp143I	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
BspACI	CCGC	2 cut(s)	353, 356
BspHI	TCATGA	1 cut(s)	25
BspPI	GGATC	2 cut(s)	257, 265
BsrFI	RCCGGY	2 cut(s)	313, 376
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	2 cut(s)	313, 376
BssMI	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
Bst4CI	ACNGT	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	19, 139
BstKTI	GATC	9 cut(s)	90, 135, 235, 255, 260, 265, 288, 436, 441
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstX2I	RGATCY	3 cut(s)	132, 232, 262
BstYI	RGATCY	3 cut(s)	132, 232, 262
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	19, 139
Cac8I	GCNNGC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	313, 376
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	4 cut(s)	26, 173, 310, 465
CviJI	RGCY	2 cut(s)	317, 380
CviKI_1	RGCY	2 cut(s)	317, 380
CviQI	GTAC	1 cut(s)	176
DpnI	GATC	9 cut(s)	89, 134, 234, 254, 259, 264, 287, 435, 440
DpnII	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
EciI	GGCGGA	1 cut(s)	342
Eco32I	GATATC	2 cut(s)	202, 460
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	180
EcoRV	GATATC	2 cut(s)	202, 460
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	4 cut(s)	29, 176, 313, 468
FaiI	YATR	7 cut(s)	27, 35, 78, 159, 174, 311, 466
FaqI	GGGAC	2 cut(s)	46, 353
FatI	CATG	4 cut(s)	25, 172, 309, 464
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	2 cut(s)	6, 126
Fsp4HI	GCNGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	356
HapII	CCGG	4 cut(s)	106, 314, 377, 405
Hin1II	CATG	4 cut(s)	29, 176, 313, 468
HinfI	GANTC	5 cut(s)	6, 29, 109, 280, 408
HpaII	CCGG	4 cut(s)	106, 314, 377, 405
HphI	GGTGA	2 cut(s)	82, 113
Hpy188III	TCNNGA	1 cut(s)	26
Hpy99I	CGWCG	2 cut(s)	105, 404
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	2 cut(s)	59, 207
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpySE526I	ACGT	2 cut(s)	59, 207
Hsp92II	CATG	4 cut(s)	29, 176, 313, 468
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
LpnPI	CCDG	9 cut(s)	119, 143, 243, 315, 327, 348, 390, 418, 461
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	2 cut(s)	59, 207
MaeIII	GTNAC	2 cut(s)	119, 337
MalI	GATC	9 cut(s)	89, 134, 234, 254, 259, 264, 287, 435, 440
MboI	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
MboII	GAAGA	3 cut(s)	8, 209, 376
MflI	RGATCY	3 cut(s)	132, 232, 262
MluCI	AATT	3 cut(s)	180, 273, 291
MlyI	GAGTC	3 cut(s)	15, 118, 274
MnlI	CCTC	6 cut(s)	33, 75, 78, 153, 156, 165
MroNI	GCCGGC	1 cut(s)	313
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	4 cut(s)	106, 314, 377, 405
MwoI	GCNNNNNNNGC	1 cut(s)	386
NaeI	GCCGGC	1 cut(s)	315
NdeII	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
NgoMIV	GCCGGC	1 cut(s)	313
NlaIII	CATG	4 cut(s)	29, 176, 313, 468
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	119, 337
PagI	TCATGA	1 cut(s)	25
PdiI	GCCGGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	29, 408
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	3 cut(s)	14, 117, 274
PpsI	GAGTC	3 cut(s)	14, 117, 274
Psp1406I	AACGTT	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	3 cut(s)	132, 232, 262
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	9 cut(s)	87, 132, 232, 252, 257, 262, 285, 433, 438
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	3 cut(s)	15, 118, 274
SetI	ASST	2 cut(s)	62, 210
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	3 cut(s)	180, 273, 291
SsiI	CCGC	2 cut(s)	353, 356
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	2 cut(s)	62, 210
TaqI	TCGA	1 cut(s)	278
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	180, 273, 291
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	29, 408
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	119, 337
Tsp45I	GTSAC	2 cut(s)	119, 337
TspDTI	ATGAA	2 cut(s)	8, 284
TspGWI	ACGGA	3 cut(s)	62, 102, 138
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	3 cut(s)	180, 273, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.