Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007424.1

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Forward (+)

13652 .. 14167

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007424.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggttcttcaagttctcagtccacaagattgcctcagaaaccgtctcacctcacgacaagctccactccctcctttgataaaatatccacctaaacctaaccctagccctaaccctaaacctaaccataagcctaaccctaaccagaccatccgtgcccagcccgaccgtcaaaagaagcggaagccaagccggtcaaacaacaccaactctctgccggcaagatcagatttccagaaaattcatgtggccaatgaccagctgagtggtcaggtcaaaatcttgaagcgcggtgagggactgaccaaacctgcagctccgcatcagccatcaccggctcctaaaaagaaacgcccatctcagaaagttcaagaactcaggttctacgcggggtcgtgcacctctagcgcctccccgcctccaagttcgcttcctctgccatcgtttcttgctaagaagagagtggtttcaaacaccggggaagtgcaaggagttgctaaagcttctacggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

171

Amino Acids

18.66

Weight (kDa)

11.12

Isoelectric Point (pI)

75.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	2 cut(s)	291, 389
AciI	CCGC	5 cut(s)	181, 291, 320, 389, 416
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	240
AgsI	TTSAA	4 cut(s)	11, 286, 371, 471
AluBI	AGCT	4 cut(s)	62, 262, 317, 503
AluI	AGCT	4 cut(s)	62, 262, 317, 503
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	50
Alw44I	GTGCAC	1 cut(s)	397
AoxI	GGCC	1 cut(s)	249
ApaLI	GTGCAC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	291, 410
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	3 cut(s)	40, 305, 324
BaeGI	GKGCMC	2 cut(s)	160, 401
BalI	TGGCCA	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	4 cut(s)	158, 337, 364, 448
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	105, 405
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	477
Bse118I	RCCGGY	3 cut(s)	192, 217, 334
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	1 cut(s)	150
BseMII	CTCAG	5 cut(s)	31, 49, 254, 374, 391
BseSI	GKGCMC	2 cut(s)	160, 401
BseXI	GCAGC	1 cut(s)	326
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	291, 389
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	193, 218, 335, 477
BslFI	GGGAC	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	160, 401
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	5 cut(s)	181, 291, 320, 389, 416
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	5 cut(s)	30, 48, 255, 373, 390
BspFNI	CGCG	2 cut(s)	291, 389
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	319
BsrFI	RCCGGY	3 cut(s)	192, 217, 334
BssAI	RCCGGY	3 cut(s)	192, 217, 334
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	44, 170
Bst6I	CTCTTC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	6 cut(s)	17, 35, 263, 360, 377, 453
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	2 cut(s)	291, 389
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	291, 410
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	224
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 436, 509
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	2 cut(s)	160, 401
BstUI	CGCG	2 cut(s)	291, 389
BstV1I	GCAGC	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	2 cut(s)	291, 410
Cfr10I	RCCGGY	3 cut(s)	192, 217, 334
CviAII	CATG	1 cut(s)	245
DdeI	CTNAG	6 cut(s)	17, 35, 263, 360, 377, 453
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	129, 246
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	244
FauI	CCCGC	2 cut(s)	382, 423
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	105, 405
GlaI	GCGC	2 cut(s)	290, 409
GluI	GCNGC	1 cut(s)	315
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	4 cut(s)	193, 218, 335, 477
HhaI	GCGC	2 cut(s)	291, 410
Hin1II	CATG	1 cut(s)	248
Hin6I	GCGC	2 cut(s)	289, 408
HinP1I	GCGC	2 cut(s)	289, 408
HindIII	AAGCTT	1 cut(s)	501
HpaII	CCGG	4 cut(s)	193, 218, 335, 477
HphI	GGTGA	3 cut(s)	40, 305, 324
Hpy166II	GTNNAC	2 cut(s)	23, 399
Hpy188I	TCNGA	3 cut(s)	38, 229, 363
Hpy188III	TCNNGA	4 cut(s)	54, 235, 283, 371
Hpy8I	GTNNAC	2 cut(s)	23, 399
HpyCH4III	ACNGT	2 cut(s)	44, 170
HpyCH4V	TGCA	3 cut(s)	314, 399, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 436, 509
HpyF3I	CTNAG	6 cut(s)	17, 35, 263, 360, 377, 453
Hsp92II	CATG	1 cut(s)	248
HspAI	GCGC	2 cut(s)	289, 408
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	3 cut(s)	67, 322, 343
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	105, 405
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	1 cut(s)	469
MhlI	GDGCHC	2 cut(s)	160, 401
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	1 cut(s)	240
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	8 cut(s)	44, 61, 81, 289, 412, 421, 429, 444
Mox20I	TGGCCA	1 cut(s)	251
MroNI	GCCGGC	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	514
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	4 cut(s)	193, 218, 335, 477
MspR9I	CCNGG	1 cut(s)	478
MvnI	CGCG	2 cut(s)	291, 389
MwoI	GCNNNNNNNGC	3 cut(s)	405, 436, 509
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	1 cut(s)	224
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	514
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	160, 401
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	5 cut(s)	181, 291, 320, 389, 416
SspMI	CTAG	2 cut(s)	105, 405
StyD4I	CCNGG	1 cut(s)	476
TaaI	ACNGT	2 cut(s)	44, 170
TasI	AATT	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	514
Tru9I	TTAA	1 cut(s)	514
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	240
XspI	CTAG	2 cut(s)	105, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.