Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Reverse (-)

9496600 .. 9497181

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1131400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGTTGAAGTTCTCAGTCCCAGAGATTGCCACAAAGACTCGCTCTCACGCCAATCAGTAATGAATTTCAATCGGAACCCTAACCCTAACCCTAGCCGCCTCGGCCGCCCCAGCCGCCCCCAGAACGACGGCAAGAACCGAAGGCCCACCCGGCCCAATAACCTACCTCGCCCGGTCCAGAAGTCCCCGGCTCCCCAAAACCTCGTCATGGGCCAGGTCAAAATCCTCAAGCGCGGCGAAGAAATCCCCAAAACGGTGCCGGCTCCACCCCCACAGAAGCAAAATTTCAAGCCCCAAGTGCCGGCTCCGCCACCACAGAAGCAGAATCCCAAGCCCCAGGTTCCGGATCTAGGAAACACGAACCTGATGGGTCCGGCACCCAAGCGGGTTCCGAAGCAGACCAAAAACAAGGACTCGAACTTGACTGCCGGGTTCTACGCCGGGTCGTCGTCGTGCATAGCCTCGCCGCCTCCGAGCTCTCTGCCTCTTCCGTCGTTCTTCGCCAAGAAGAGCGTTGTCTCGAGCACCGACGCTGCGGCAAGCGAGCTGCTGAAGCTTCTGCGGCTTAATCTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

194

Amino Acids

20.99

Weight (kDa)

10.91

Isoelectric Point (pI)

80.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	259, 379
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	9 cut(s)	100, 109, 118, 237, 311, 388, 470, 539, 565
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	67, 286
AcuI	CTGAAG	1 cut(s)	575
AfiI	CCNNNNNNNGG	5 cut(s)	211, 256, 304, 346, 353
AgsI	TTSAA	3 cut(s)	11, 73, 292
AjnI	CCWGG	2 cut(s)	216, 339
AluBI	AGCT	3 cut(s)	480, 550, 559
AluI	AGCT	3 cut(s)	480, 550, 559
Alw21I	GWGCWC	2 cut(s)	482, 530
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	1 cut(s)	357
Ama87I	CYCGRG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	4 cut(s)	106, 146, 155, 214
ApeKI	GCWGC	2 cut(s)	536, 550
ApoI	RAATTY	2 cut(s)	67, 286
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	5 cut(s)	147, 156, 178, 214, 374
AsuC2I	CCSGG	5 cut(s)	154, 176, 191, 433, 445
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	178, 374
BanI	GGYRCC	2 cut(s)	259, 379
BanII	GRGCYC	1 cut(s)	482
Bbv12I	GWGCWC	2 cut(s)	482, 530
BbvI	GCAGC	2 cut(s)	523, 537
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	2 cut(s)	218, 341
BcnI	CCSGG	5 cut(s)	154, 176, 191, 433, 445
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	2 cut(s)	96, 353
BglI	GCCNNNNNGGC	2 cut(s)	105, 154
BisI	GCNGC	9 cut(s)	100, 109, 118, 238, 470, 537, 540, 551, 566
BlsI	GCNGC	9 cut(s)	101, 110, 119, 239, 471, 538, 541, 552, 567
Bme1390I	CCNGG	7 cut(s)	154, 176, 191, 218, 341, 433, 445
Bme18I	GGWCC	2 cut(s)	178, 374
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	5 cut(s)	147, 156, 178, 214, 374
BmiI	GGNNCC	9 cut(s)	80, 195, 261, 267, 309, 345, 375, 381, 393
BmrFI	CCNGG	7 cut(s)	154, 176, 191, 218, 341, 433, 445
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	5 cut(s)	154, 176, 191, 433, 445
BsaJI	CCNNGG	3 cut(s)	103, 189, 339
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	5 cut(s)	211, 256, 304, 346, 353
Bse118I	RCCGGY	2 cut(s)	262, 304
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	218, 341
BseDI	CCNNGG	3 cut(s)	103, 189, 339
BseLI	CCNNNNNNNGG	5 cut(s)	211, 256, 304, 346, 353
BseMII	CTCAG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	523, 537
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	108, 148, 157, 216
BshNI	GGYRCC	2 cut(s)	259, 379
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	482, 530
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	9 cut(s)	154, 176, 191, 263, 305, 347, 377, 432, 444
BslFI	GGGAC	2 cut(s)	6, 172
BslI	CCNNNNNNNGG	5 cut(s)	211, 256, 304, 346, 353
BsmAI	GTCTC	1 cut(s)	526
BsmFI	GGGAC	2 cut(s)	6, 172
BsnI	GGCC	4 cut(s)	108, 148, 157, 216
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	2 cut(s)	482, 530
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	9 cut(s)	100, 109, 118, 237, 311, 388, 470, 539, 565
BspANI	GGCC	4 cut(s)	108, 148, 157, 216
BspCNI	CTCAG	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	9 cut(s)	80, 195, 261, 267, 309, 345, 375, 381, 393
BspPI	GGATC	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	506
BspT107I	GGYRCC	2 cut(s)	259, 379
BsrFI	RCCGGY	2 cut(s)	262, 304
BssAI	RCCGGY	2 cut(s)	262, 304
BssECI	CCNNGG	3 cut(s)	103, 189, 339
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	218, 341
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	495, 506
BstC8I	GCNNGC	4 cut(s)	264, 306, 544, 548
BstDEI	CTNAG	2 cut(s)	17, 579
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	9 cut(s)	105, 108, 114, 117, 154, 301, 310, 556, 565
BstNI	CCWGG	2 cut(s)	218, 341
BstSCI	CCNGG	7 cut(s)	152, 174, 189, 216, 339, 431, 443
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	523, 537
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	108, 148, 157, 216
Cac8I	GCNNGC	4 cut(s)	264, 306, 544, 548
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	262, 304
Cfr13I	GGNCC	5 cut(s)	147, 156, 178, 214, 374
CseI	GACGC	1 cut(s)	542
CviAII	CATG	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	17, 579
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	495, 506
EarI	CTCTTC	2 cut(s)	495, 506
EciI	GGCGGA	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	480
EclXI	CGGCCG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	178, 374
Eco52I	CGGCCG	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	216, 339
EcoT38I	GRGCYC	1 cut(s)	482
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	212, 461
FaqI	GGGAC	2 cut(s)	6, 172
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	381
Fnu4HI	GCNGC	9 cut(s)	100, 109, 118, 238, 470, 537, 540, 551, 566
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	9 cut(s)	100, 109, 118, 238, 470, 537, 540, 551, 566
FspBI	CTAG	2 cut(s)	96, 353
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	9 cut(s)	100, 109, 118, 238, 470, 537, 540, 551, 566
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	108, 148, 157, 216
HapII	CCGG	9 cut(s)	154, 176, 191, 263, 305, 347, 377, 432, 444
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	41, 328, 416
HpaII	CCGG	9 cut(s)	154, 176, 191, 263, 305, 347, 377, 432, 444
Hpy188I	TCNGA	3 cut(s)	78, 396, 477
Hpy188III	TCNNGA	3 cut(s)	181, 347, 523
Hpy99I	CGWCG	5 cut(s)	134, 454, 457, 499, 536
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	9 cut(s)	105, 108, 114, 117, 154, 301, 310, 556, 565
HpyF3I	CTNAG	2 cut(s)	17, 579
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	346
KroI	GCCGGC	2 cut(s)	262, 304
KroNI	GCCGGC	2 cut(s)	264, 306
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	3 cut(s)	199, 271, 313
Lsp1109I	GCAGC	2 cut(s)	523, 537
MaeI	CTAG	2 cut(s)	96, 353
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	254, 482, 493, 523
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	482, 530
MluCI	AATT	2 cut(s)	67, 286
MlyI	GAGTC	2 cut(s)	35, 410
MnlI	CCTC	7 cut(s)	113, 180, 215, 239, 475, 483, 498
MroI	TCCGGA	1 cut(s)	346
MroNI	GCCGGC	2 cut(s)	262, 304
MseI	TTAA	1 cut(s)	570
MspI	CCGG	9 cut(s)	154, 176, 191, 263, 305, 347, 377, 432, 444
MspR9I	CCNGG	7 cut(s)	154, 176, 191, 218, 341, 433, 445
MvaI	CCWGG	2 cut(s)	218, 341
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	9 cut(s)	105, 108, 114, 117, 154, 301, 310, 556, 565
NaeI	GCCGGC	2 cut(s)	264, 306
NciI	CCSGG	5 cut(s)	154, 176, 191, 433, 445
NdeII	GATC	1 cut(s)	349
NgoMIV	GCCGGC	2 cut(s)	262, 304
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	9 cut(s)	80, 195, 261, 267, 309, 345, 375, 381, 393
NmeAIII	GCCGAG	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdiI	GCCGGC	2 cut(s)	264, 306
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	9 cut(s)	101, 110, 119, 239, 471, 538, 541, 552, 567
PleI	GAGTC	2 cut(s)	35, 410
PpsI	GAGTC	2 cut(s)	35, 410
Psp124BI	GAGCTC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	216, 339
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	216, 339
PspN4I	GGNNCC	9 cut(s)	80, 195, 261, 267, 309, 345, 375, 381, 393
PspPI	GGNCC	5 cut(s)	147, 156, 178, 214, 374
PsuI	RGATCY	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	9 cut(s)	100, 109, 118, 238, 470, 537, 540, 551, 566
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	5 cut(s)	147, 156, 178, 214, 374
SchI	GAGTC	2 cut(s)	35, 410
ScrFI	CCNGG	7 cut(s)	154, 176, 191, 218, 341, 433, 445
SduI	GDGCHC	2 cut(s)	482, 530
SetI	ASST	9 cut(s)	168, 172, 207, 222, 345, 369, 482, 552, 561
SfiI	GGCCNNNNNGGCC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	523
SinI	GGWCC	2 cut(s)	178, 374
SlaI	CTCGAG	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	230, 523
SmoI	CTYRAG	2 cut(s)	230, 523
Sse9I	AATT	2 cut(s)	67, 286
SsiI	CCGC	9 cut(s)	100, 109, 118, 237, 311, 388, 470, 539, 565
SspMI	CTAG	2 cut(s)	96, 353
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	7 cut(s)	152, 174, 189, 216, 339, 431, 443
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	419, 524
TasI	AATT	2 cut(s)	67, 286
TauI	GCSGC	7 cut(s)	102, 111, 120, 240, 472, 542, 568
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TseI	GCWGC	2 cut(s)	536, 550
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	483
VpaK11BI	GGWCC	2 cut(s)	178, 374
XapI	RAATTY	2 cut(s)	67, 286
XhoI	CTCGAG	1 cut(s)	523
XspI	CTAG	2 cut(s)	96, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.